data_A1BN8 # _chem_comp.id A1BN8 _chem_comp.name "(3S)-1-[(1-benzothiophen-3-yl)methyl]-6-oxopiperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H16 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-10 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 288.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BN8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HZC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BN8 N1 N1 N 0 1 N N N N N N 10.732 13.716 22.550 -0.947 -1.058 0.705 N1 A1BN8 1 A1BN8 C4 C1 C 0 1 N N N N N N 11.914 13.995 23.141 -1.384 -2.131 0.045 C4 A1BN8 2 A1BN8 C5 C2 C 0 1 N N N N N N 9.635 13.221 23.356 0.254 -1.203 1.532 C5 A1BN8 3 A1BN8 C6 C3 C 0 1 Y N N N N N 9.552 11.717 23.460 1.474 -0.898 0.703 C6 A1BN8 4 A1BN8 C7 C4 C 0 1 Y N N N N N 10.311 10.891 22.687 2.231 -1.842 0.180 C7 A1BN8 5 A1BN8 C8 C5 C 0 1 Y N N N N N 8.812 9.585 24.164 3.060 0.484 -0.372 C8 A1BN8 6 A1BN8 C10 C6 C 0 1 Y N N N N N 7.152 9.152 25.839 3.036 2.888 -0.344 C10 A1BN8 7 A1BN8 C13 C7 C 0 1 Y N N N N N 8.678 10.978 24.347 1.904 0.461 0.414 C13 A1BN8 8 A1BN8 O1 O1 O 0 1 N N N N N N 12.085 13.881 24.353 -0.744 -3.158 0.131 O1 A1BN8 9 A1BN8 C3 C8 C 0 1 N N N N N N 13.040 14.489 22.258 -2.627 -2.137 -0.798 C3 A1BN8 10 A1BN8 C2 C9 C 0 1 N N N N N N 12.626 14.976 20.866 -3.035 -0.700 -1.133 C2 A1BN8 11 A1BN8 C14 C10 C 0 1 N N N N N N 10.376 13.944 21.142 -1.586 0.251 0.651 C14 A1BN8 12 A1BN8 C1 C11 C 0 1 N N S N N N 11.627 13.986 20.259 -3.030 0.120 0.162 C1 A1BN8 13 A1BN8 C C12 C 0 1 N N N N N N 11.291 14.326 18.815 -3.599 1.490 -0.104 C A1BN8 14 A1BN8 O O2 O 0 1 N N N N N N 11.524 13.519 17.897 -2.922 2.477 0.095 O A1BN8 15 A1BN8 N N2 N 0 1 N N N N N N 10.659 15.476 18.624 -4.859 1.619 -0.564 N A1BN8 16 A1BN8 S S1 S 0 1 Y N N N N N 10.015 9.214 22.972 3.569 -1.162 -0.726 S A1BN8 17 A1BN8 C12 C13 C 0 1 Y N N N N N 7.770 11.408 25.329 1.327 1.686 0.812 C12 A1BN8 18 A1BN8 C11 C14 C 0 1 Y N N N N N 7.022 10.503 26.060 1.888 2.868 0.436 C11 A1BN8 19 A1BN8 C9 C15 C 0 1 Y N N N N N 8.048 8.678 24.896 3.619 1.709 -0.748 C9 A1BN8 20 A1BN8 H7 H1 H 0 1 N N N N N N 9.746 13.628 24.372 0.202 -0.510 2.372 H7 A1BN8 21 A1BN8 H8 H2 H 0 1 N N N N N N 8.695 13.586 22.915 0.315 -2.224 1.907 H8 A1BN8 22 A1BN8 H9 H3 H 0 1 N N N N N N 11.029 11.251 21.965 2.049 -2.900 0.295 H9 A1BN8 23 A1BN8 H11 H4 H 0 1 N N N N N N 6.551 8.456 26.405 3.472 3.832 -0.636 H11 A1BN8 24 A1BN8 H6 H5 H 0 1 N N N N N N 13.755 13.663 22.129 -2.436 -2.683 -1.722 H6 A1BN8 25 A1BN8 H5 H6 H 0 1 N N N N N N 13.534 15.325 22.776 -3.434 -2.623 -0.250 H5 A1BN8 26 A1BN8 H4 H7 H 0 1 N N N N N N 13.515 15.043 20.221 -2.325 -0.272 -1.841 H4 A1BN8 27 A1BN8 H3 H8 H 0 1 N N N N N N 12.157 15.967 20.948 -4.035 -0.694 -1.568 H3 A1BN8 28 A1BN8 H15 H9 H 0 1 N N N N N N 9.722 13.129 20.800 -1.586 0.693 1.647 H15 A1BN8 29 A1BN8 H14 H10 H 0 1 N N N N N N 9.843 14.902 21.056 -1.028 0.896 -0.029 H14 A1BN8 30 A1BN8 H H11 H 0 1 N N N N N N 12.087 12.987 20.276 -3.631 -0.387 0.918 H A1BN8 31 A1BN8 H1 H12 H 0 1 N N N N N N 10.346 15.728 17.709 -5.400 0.830 -0.724 H1 A1BN8 32 A1BN8 H2 H13 H 0 1 N N N N N N 10.496 16.091 19.395 -5.225 2.501 -0.736 H2 A1BN8 33 A1BN8 H13 H14 H 0 1 N N N N N N 7.654 12.465 25.517 0.434 1.686 1.419 H13 A1BN8 34 A1BN8 H12 H15 H 0 1 N N N N N N 6.331 10.860 26.809 1.437 3.798 0.748 H12 A1BN8 35 A1BN8 H10 H16 H 0 1 N N N N N N 8.154 7.616 24.729 4.512 1.730 -1.355 H10 A1BN8 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BN8 N C SING N N 1 A1BN8 O C DOUB N N 2 A1BN8 C C1 SING N N 3 A1BN8 C1 C2 SING N N 4 A1BN8 C2 C3 SING N N 5 A1BN8 C3 C4 SING N N 6 A1BN8 C4 O1 DOUB N N 7 A1BN8 N1 C4 SING N N 8 A1BN8 C5 N1 SING N N 9 A1BN8 C6 C5 SING N N 10 A1BN8 C6 C7 DOUB Y N 11 A1BN8 C7 S SING Y N 12 A1BN8 S C8 SING Y N 13 A1BN8 C8 C9 DOUB Y N 14 A1BN8 C9 C10 SING Y N 15 A1BN8 C10 C11 DOUB Y N 16 A1BN8 C11 C12 SING Y N 17 A1BN8 C12 C13 DOUB Y N 18 A1BN8 C13 C6 SING Y N 19 A1BN8 C8 C13 SING Y N 20 A1BN8 C14 N1 SING N N 21 A1BN8 C1 C14 SING N N 22 A1BN8 C5 H7 SING N N 23 A1BN8 C5 H8 SING N N 24 A1BN8 C7 H9 SING N N 25 A1BN8 C10 H11 SING N N 26 A1BN8 C3 H6 SING N N 27 A1BN8 C3 H5 SING N N 28 A1BN8 C2 H4 SING N N 29 A1BN8 C2 H3 SING N N 30 A1BN8 C14 H15 SING N N 31 A1BN8 C14 H14 SING N N 32 A1BN8 C1 H SING N N 33 A1BN8 N H1 SING N N 34 A1BN8 N H2 SING N N 35 A1BN8 C12 H13 SING N N 36 A1BN8 C11 H12 SING N N 37 A1BN8 C9 H10 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BN8 SMILES ACDLabs 14.52 "NC(=O)C1CCC(=O)N(C1)Cc1csc2ccccc21" A1BN8 InChI InChI 1.06 "InChI=1S/C15H16N2O2S/c16-15(19)10-5-6-14(18)17(7-10)8-11-9-20-13-4-2-1-3-12(11)13/h1-4,9-10H,5-8H2,(H2,16,19)/t10-/m0/s1" A1BN8 InChIKey InChI 1.06 YMUMSINAPOHSTF-JTQLQIEISA-N A1BN8 SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCC(=O)N(C1)Cc2csc3ccccc23" A1BN8 SMILES CACTVS 3.385 "NC(=O)[CH]1CCC(=O)N(C1)Cc2csc3ccccc23" A1BN8 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)c(cs2)CN3C[C@H](CCC3=O)C(=O)N" A1BN8 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)c(cs2)CN3CC(CCC3=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BN8 "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(1-benzothiophen-3-yl)methyl]-6-oxopiperidine-3-carboxamide" A1BN8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-(1-benzothiophen-3-ylmethyl)-6-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BN8 "Create component" 2025-01-10 RCSB A1BN8 "Initial release" 2025-02-26 RCSB #