data_A1BNV # _chem_comp.id A1BNV _chem_comp.name "N-[2-(1,1-dioxo-1lambda~6~-thiomorpholin-4-yl)phenyl]-Nalpha-(2-fluorobenzoyl)-D-phenylalaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H26 F N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-09 _chem_comp.pdbx_modified_date 2025-10-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 495.566 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BNV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MRQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BNV C11 C1 C 0 1 N N N N N N 131.532 165.512 162.642 0.091 1.375 0.098 C11 A1BNV 1 A1BNV C12 C2 C 0 1 N N R N N N 130.121 165.407 163.165 1.126 0.294 0.271 C12 A1BNV 2 A1BNV C13 C3 C 0 1 N N N N N N 129.778 163.951 163.413 0.747 -0.917 -0.583 C13 A1BNV 3 A1BNV C14 C4 C 0 1 Y N N N N N 129.932 163.064 162.164 1.713 -2.042 -0.316 C14 A1BNV 4 A1BNV C15 C5 C 0 1 Y N N N N N 131.034 162.257 162.012 1.449 -2.957 0.686 C15 A1BNV 5 A1BNV C16 C6 C 0 1 Y N N N N N 131.192 161.488 160.904 2.336 -3.989 0.931 C16 A1BNV 6 A1BNV C17 C7 C 0 1 Y N N N N N 130.239 161.495 159.958 3.487 -4.106 0.174 C17 A1BNV 7 A1BNV C18 C8 C 0 1 Y N N N N N 129.140 162.257 160.081 3.750 -3.191 -0.828 C18 A1BNV 8 A1BNV C19 C9 C 0 1 Y N N N N N 128.975 163.045 161.186 2.861 -2.163 -1.077 C19 A1BNV 9 A1BNV F11 F1 F 0 1 N N N N N N 130.427 169.885 165.993 5.980 -0.808 1.337 F11 A1BNV 10 A1BNV N11 N1 N 0 1 N N N N N N 131.864 166.113 161.345 -1.194 1.138 0.430 N11 A1BNV 11 A1BNV N12 N2 N 0 1 N N N N N N 129.880 165.991 164.438 2.435 0.799 -0.151 N12 A1BNV 12 A1BNV N13 N3 N 0 1 N N N N N N 132.523 168.340 159.632 -3.911 0.560 0.091 N13 A1BNV 13 A1BNV O11 O1 O 0 1 N N N N N N 132.335 165.069 163.288 0.414 2.461 -0.336 O11 A1BNV 14 A1BNV O12 O2 O 0 1 N N N N N N 129.631 168.153 163.852 3.491 -0.655 1.154 O12 A1BNV 15 A1BNV O13 O3 O 0 1 N N N N N N 130.773 171.666 159.426 -6.951 -1.410 -0.478 O13 A1BNV 16 A1BNV O14 O4 O 0 1 N N N N N N 129.024 170.296 159.371 -5.479 -3.366 -0.326 O14 A1BNV 17 A1BNV S11 S1 S 0 1 N N N N N N 130.414 170.328 159.452 -5.652 -1.956 -0.295 S11 A1BNV 18 A1BNV C110 C10 C 0 0 N N N N N N 129.622 167.394 164.701 3.561 0.255 0.351 C110 A1BNV 19 A1BNV C111 C11 C 0 0 Y N N N N N 129.298 167.854 166.131 4.880 0.764 -0.075 C111 A1BNV 20 A1BNV C112 C12 C 0 0 Y N N N N N 129.692 169.042 166.670 6.051 0.202 0.443 C112 A1BNV 21 A1BNV C113 C13 C 0 0 Y N N N N N 129.384 169.427 167.927 7.283 0.685 0.038 C113 A1BNV 22 A1BNV C114 C14 C 0 0 Y N N N N N 128.616 168.597 168.666 7.356 1.720 -0.875 C114 A1BNV 23 A1BNV C115 C15 C 0 0 Y N N N N N 128.183 167.411 168.143 6.200 2.280 -1.391 C115 A1BNV 24 A1BNV C116 C16 C 0 0 Y N N N N N 128.522 167.049 166.893 4.965 1.805 -1.003 C116 A1BNV 25 A1BNV C117 C17 C 0 0 Y N N N N N 133.195 166.223 160.746 -2.134 2.176 0.382 C117 A1BNV 26 A1BNV C118 C18 C 0 0 Y N N N N N 133.487 167.284 159.894 -3.488 1.887 0.216 C118 A1BNV 27 A1BNV C119 C19 C 0 0 Y N N N N N 134.714 167.374 159.340 -4.413 2.919 0.175 C119 A1BNV 28 A1BNV C120 C20 C 0 0 Y N N N N N 135.659 166.425 159.571 -3.992 4.230 0.298 C120 A1BNV 29 A1BNV C121 C21 C 0 0 Y N N N N N 135.382 165.372 160.389 -2.649 4.517 0.462 C121 A1BNV 30 A1BNV C122 C22 C 0 0 Y N N N N N 134.155 165.276 160.962 -1.720 3.494 0.504 C122 A1BNV 31 A1BNV C123 C23 C 0 0 N N N N N N 132.370 169.295 160.708 -4.847 0.204 1.161 C123 A1BNV 32 A1BNV C124 C24 C 0 0 N N N N N N 130.941 169.670 160.979 -4.966 -1.319 1.264 C124 A1BNV 33 A1BNV C125 C25 C 0 0 N N N N N N 131.157 169.677 157.978 -4.525 -1.200 -1.505 C125 A1BNV 34 A1BNV C126 C26 C 0 0 N N N N N N 132.432 168.847 158.256 -4.464 0.308 -1.242 C126 A1BNV 35 A1BNV H12 H1 H 0 1 N N N N N N 129.427 165.818 162.417 1.172 -0.000 1.320 H12 A1BNV 36 A1BNV H13B H2 H 0 0 N N N N N N 128.734 163.892 163.756 -0.264 -1.238 -0.329 H13B A1BNV 37 A1BNV H13A H3 H 0 0 N N N N N N 130.444 163.565 164.199 0.788 -0.646 -1.637 H13A A1BNV 38 A1BNV H15 H4 H 0 1 N N N N N N 131.787 162.234 162.786 0.551 -2.866 1.278 H15 A1BNV 39 A1BNV H16 H5 H 0 1 N N N N N N 132.075 160.877 160.785 2.130 -4.703 1.715 H16 A1BNV 40 A1BNV H17 H6 H 0 1 N N N N N N 130.359 160.876 159.081 4.182 -4.909 0.369 H17 A1BNV 41 A1BNV H18 H7 H 0 1 N N N N N N 128.387 162.247 159.307 4.649 -3.283 -1.420 H18 A1BNV 42 A1BNV H19 H8 H 0 1 N N N N N N 128.088 163.653 161.287 3.067 -1.448 -1.860 H19 A1BNV 43 A1BNV H11 H9 H 0 1 N N N N N N 131.102 166.486 160.816 -1.468 0.248 0.702 H11 A1BNV 44 A1BNV H12I H10 H 0 0 N N N N N N 129.889 165.377 165.227 2.491 1.525 -0.792 H12I A1BNV 45 A1BNV H113 H11 H 0 0 N N N N N N 129.739 170.365 168.327 8.189 0.253 0.437 H113 A1BNV 46 A1BNV H114 H12 H 0 0 N N N N N N 128.343 168.872 169.674 8.320 2.094 -1.187 H114 A1BNV 47 A1BNV H115 H13 H 0 0 N N N N N N 127.563 166.758 168.739 6.265 3.088 -2.105 H115 A1BNV 48 A1BNV H116 H14 H 0 0 N N N N N N 128.172 166.108 166.494 4.065 2.241 -1.411 H116 A1BNV 49 A1BNV H119 H15 H 0 0 N N N N N N 134.949 168.214 158.703 -5.463 2.699 0.047 H119 A1BNV 50 A1BNV H120 H16 H 0 0 N N N N N N 136.630 166.506 159.106 -4.714 5.033 0.266 H120 A1BNV 51 A1BNV H121 H17 H 0 0 N N N N N N 136.132 164.619 160.580 -2.326 5.543 0.557 H121 A1BNV 52 A1BNV H122 H18 H 0 0 N N N N N N 133.934 164.434 161.601 -0.673 3.722 0.638 H122 A1BNV 53 A1BNV H12A H19 H 0 0 N N N N N N 132.795 168.858 161.624 -4.483 0.604 2.108 H12A A1BNV 54 A1BNV H12B H20 H 0 0 N N N N N N 132.925 170.207 160.445 -5.826 0.630 0.942 H12B A1BNV 55 A1BNV H12C H21 H 0 0 N N N N N N 130.874 170.423 161.778 -5.630 -1.579 2.089 H12C A1BNV 56 A1BNV H12D H22 H 0 0 N N N N N N 130.346 168.787 161.256 -3.981 -1.753 1.434 H12D A1BNV 57 A1BNV H12E H23 H 0 0 N N N N N N 131.423 170.517 157.320 -3.530 -1.631 -1.397 H12E A1BNV 58 A1BNV H12F H24 H 0 0 N N N N N N 130.423 169.033 157.472 -4.897 -1.380 -2.513 H12F A1BNV 59 A1BNV H12H H25 H 0 0 N N N N N N 132.443 167.988 157.569 -5.468 0.727 -1.302 H12H A1BNV 60 A1BNV H12G H26 H 0 0 N N N N N N 133.308 169.483 158.062 -3.830 0.781 -1.992 H12G A1BNV 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BNV C125 C126 SING N N 1 A1BNV C125 S11 SING N N 2 A1BNV C126 N13 SING N N 3 A1BNV C119 C120 DOUB Y N 4 A1BNV C119 C118 SING Y N 5 A1BNV O14 S11 DOUB N N 6 A1BNV O13 S11 DOUB N N 7 A1BNV S11 C124 SING N N 8 A1BNV C120 C121 SING Y N 9 A1BNV N13 C118 SING N N 10 A1BNV N13 C123 SING N N 11 A1BNV C118 C117 DOUB Y N 12 A1BNV C17 C18 DOUB Y N 13 A1BNV C17 C16 SING Y N 14 A1BNV C18 C19 SING Y N 15 A1BNV C121 C122 DOUB Y N 16 A1BNV C123 C124 SING N N 17 A1BNV C117 C122 SING Y N 18 A1BNV C117 N11 SING N N 19 A1BNV C16 C15 DOUB Y N 20 A1BNV C19 C14 DOUB Y N 21 A1BNV N11 C11 SING N N 22 A1BNV C15 C14 SING Y N 23 A1BNV C14 C13 SING N N 24 A1BNV C11 C12 SING N N 25 A1BNV C11 O11 DOUB N N 26 A1BNV C12 C13 SING N N 27 A1BNV C12 N12 SING N N 28 A1BNV O12 C110 DOUB N N 29 A1BNV N12 C110 SING N N 30 A1BNV C110 C111 SING N N 31 A1BNV F11 C112 SING N N 32 A1BNV C111 C112 DOUB Y N 33 A1BNV C111 C116 SING Y N 34 A1BNV C112 C113 SING Y N 35 A1BNV C116 C115 DOUB Y N 36 A1BNV C113 C114 DOUB Y N 37 A1BNV C115 C114 SING Y N 38 A1BNV C12 H12 SING N N 39 A1BNV C13 H13B SING N N 40 A1BNV C13 H13A SING N N 41 A1BNV C15 H15 SING N N 42 A1BNV C16 H16 SING N N 43 A1BNV C17 H17 SING N N 44 A1BNV C18 H18 SING N N 45 A1BNV C19 H19 SING N N 46 A1BNV N11 H11 SING N N 47 A1BNV N12 H12I SING N N 48 A1BNV C113 H113 SING N N 49 A1BNV C114 H114 SING N N 50 A1BNV C115 H115 SING N N 51 A1BNV C116 H116 SING N N 52 A1BNV C119 H119 SING N N 53 A1BNV C120 H120 SING N N 54 A1BNV C121 H121 SING N N 55 A1BNV C122 H122 SING N N 56 A1BNV C123 H12A SING N N 57 A1BNV C123 H12B SING N N 58 A1BNV C124 H12C SING N N 59 A1BNV C124 H12D SING N N 60 A1BNV C125 H12E SING N N 61 A1BNV C125 H12F SING N N 62 A1BNV C126 H12H SING N N 63 A1BNV C126 H12G SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BNV SMILES ACDLabs 14.52 "O=S1(=O)CCN(CC1)c1ccccc1NC(=O)C(Cc1ccccc1)NC(=O)c1ccccc1F" A1BNV InChI InChI 1.06 "InChI=1S/C26H26FN3O4S/c27-21-11-5-4-10-20(21)25(31)29-23(18-19-8-2-1-3-9-19)26(32)28-22-12-6-7-13-24(22)30-14-16-35(33,34)17-15-30/h1-13,23H,14-18H2,(H,28,32)(H,29,31)/t23-/m1/s1" A1BNV InChIKey InChI 1.06 GDQUFAMUOYIJII-HSZRJFAPSA-N A1BNV SMILES_CANONICAL CACTVS 3.385 "Fc1ccccc1C(=O)N[C@H](Cc2ccccc2)C(=O)Nc3ccccc3N4CC[S](=O)(=O)CC4" A1BNV SMILES CACTVS 3.385 "Fc1ccccc1C(=O)N[CH](Cc2ccccc2)C(=O)Nc3ccccc3N4CC[S](=O)(=O)CC4" A1BNV SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)C[C@H](C(=O)Nc2ccccc2N3CCS(=O)(=O)CC3)NC(=O)c4ccccc4F" A1BNV SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CC(C(=O)Nc2ccccc2N3CCS(=O)(=O)CC3)NC(=O)c4ccccc4F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BNV "SYSTEMATIC NAME" ACDLabs 14.52 "N-[2-(1,1-dioxo-1lambda~6~-thiomorpholin-4-yl)phenyl]-Nalpha-(2-fluorobenzoyl)-D-phenylalaninamide" A1BNV "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(2~{R})-1-[[2-[1,1-bis(oxidanylidene)-1,4-thiazinan-4-yl]phenyl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]-2-fluoranyl-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BNV "Create component" 2025-01-09 RCSB A1BNV "Initial release" 2025-10-08 RCSB #