data_A1BOD # _chem_comp.id A1BOD _chem_comp.name "(3S)-N~1~-(cyclopropylmethyl)piperidine-1,3-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H19 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-10 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 225.287 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BOD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HV7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BOD N1 N1 N 0 1 N N N N N N 9.130 15.493 22.104 0.322 0.154 -0.490 N1 A1BOD 1 A1BOD C4 C1 C 0 1 N N N N N N 10.202 16.147 22.870 0.291 1.619 -0.596 C4 A1BOD 2 A1BOD C5 C2 C 0 1 N N N N N N 8.529 14.324 22.478 -0.815 -0.544 -0.299 C5 A1BOD 3 A1BOD C6 C3 C 0 1 N N N N N N 8.306 12.605 24.241 -3.195 -0.650 0.214 C6 A1BOD 4 A1BOD C7 C4 C 0 1 N N N N N N 9.024 11.281 24.010 -4.367 0.318 0.387 C7 A1BOD 5 A1BOD C8 C5 C 0 1 N N N N N N 10.527 11.208 24.051 -5.706 -0.268 0.839 C8 A1BOD 6 A1BOD C10 C6 C 0 1 N N N N N N 9.015 15.946 20.713 1.614 -0.535 -0.601 C10 A1BOD 7 A1BOD O1 O1 O 0 1 N N N N N N 7.573 13.888 21.860 -0.790 -1.760 -0.305 O1 A1BOD 8 A1BOD N2 N2 N 0 1 N N N N N N 8.991 13.729 23.596 -1.980 0.105 -0.103 N2 A1BOD 9 A1BOD C9 C7 C 0 1 N N N N N N 9.800 11.013 22.767 -5.527 0.207 -0.604 C9 A1BOD 10 A1BOD C3 C8 C 0 1 N N N N N N 11.540 15.914 22.178 1.275 2.208 0.420 C3 A1BOD 11 A1BOD C2 C9 C 0 1 N N N N N N 11.475 16.430 20.738 2.658 1.590 0.201 C2 A1BOD 12 A1BOD C1 C10 C 0 1 N N S N N N 10.335 15.716 19.971 2.586 0.072 0.415 C1 A1BOD 13 A1BOD C C11 C 0 1 N N N N N N 10.242 16.173 18.526 3.957 -0.527 0.230 C A1BOD 14 A1BOD O O2 O 0 1 N N N N N N 9.795 17.292 18.241 4.898 0.186 -0.046 O A1BOD 15 A1BOD N N3 N 0 1 N N N N N N 10.652 15.296 17.608 4.136 -1.855 0.370 N A1BOD 16 A1BOD H8 H1 H 0 1 N N N N N N 10.236 15.725 23.885 0.582 1.919 -1.602 H8 A1BOD 17 A1BOD H7 H2 H 0 1 N N N N N N 10.003 17.227 22.929 -0.715 1.980 -0.384 H7 A1BOD 18 A1BOD H10 H3 H 0 1 N N N N N N 8.255 12.796 25.323 -3.045 -1.208 1.139 H10 A1BOD 19 A1BOD H11 H4 H 0 1 N N N N N N 7.287 12.531 23.833 -3.414 -1.344 -0.597 H11 A1BOD 20 A1BOD H12 H5 H 0 1 N N N N N N 8.510 10.406 24.434 -4.105 1.313 0.748 H12 A1BOD 21 A1BOD H13 H6 H 0 1 N N N N N N 11.119 12.121 24.216 -5.753 -1.342 1.013 H13 A1BOD 22 A1BOD H14 H7 H 0 1 N N N N N N 11.024 10.356 24.538 -6.326 0.343 1.496 H14 A1BOD 23 A1BOD H18 H8 H 0 1 N N N N N N 8.214 15.383 20.212 1.482 -1.597 -0.390 H18 A1BOD 24 A1BOD H17 H9 H 0 1 N N N N N N 8.773 17.019 20.699 2.010 -0.410 -1.609 H17 A1BOD 25 A1BOD H9 H10 H 0 1 N N N N N N 9.838 14.069 24.003 -2.014 1.072 -0.171 H9 A1BOD 26 A1BOD H15 H11 H 0 1 N N N N N N 9.859 11.781 21.982 -6.028 1.130 -0.897 H15 A1BOD 27 A1BOD H16 H12 H 0 1 N N N N N N 9.765 10.016 22.303 -5.455 -0.555 -1.380 H16 A1BOD 28 A1BOD H6 H13 H 0 1 N N N N N N 11.765 14.837 22.170 1.334 3.288 0.286 H6 A1BOD 29 A1BOD H5 H14 H 0 1 N N N N N N 12.331 16.450 22.723 0.933 1.984 1.430 H5 A1BOD 30 A1BOD H4 H15 H 0 1 N N N N N N 12.433 16.230 20.236 2.990 1.794 -0.817 H4 A1BOD 31 A1BOD H3 H16 H 0 1 N N N N N N 11.285 17.513 20.747 3.366 2.025 0.906 H3 A1BOD 32 A1BOD H H17 H 0 1 N N N N N N 10.547 14.637 19.978 2.231 -0.137 1.423 H A1BOD 33 A1BOD H1 H18 H 0 1 N N N N N N 10.606 15.530 16.637 3.383 -2.426 0.590 H1 A1BOD 34 A1BOD H2 H19 H 0 1 N N N N N N 11.005 14.404 17.891 5.018 -2.241 0.251 H2 A1BOD 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BOD N C SING N N 1 A1BOD O C DOUB N N 2 A1BOD C C1 SING N N 3 A1BOD C1 C2 SING N N 4 A1BOD C2 C3 SING N N 5 A1BOD C3 C4 SING N N 6 A1BOD C4 N1 SING N N 7 A1BOD N1 C5 SING N N 8 A1BOD C5 O1 DOUB N N 9 A1BOD N2 C5 SING N N 10 A1BOD C6 N2 SING N N 11 A1BOD C7 C6 SING N N 12 A1BOD C7 C8 SING N N 13 A1BOD C8 C9 SING N N 14 A1BOD C9 C7 SING N N 15 A1BOD C10 N1 SING N N 16 A1BOD C1 C10 SING N N 17 A1BOD C4 H8 SING N N 18 A1BOD C4 H7 SING N N 19 A1BOD C6 H10 SING N N 20 A1BOD C6 H11 SING N N 21 A1BOD C7 H12 SING N N 22 A1BOD C8 H13 SING N N 23 A1BOD C8 H14 SING N N 24 A1BOD C10 H18 SING N N 25 A1BOD C10 H17 SING N N 26 A1BOD N2 H9 SING N N 27 A1BOD C9 H15 SING N N 28 A1BOD C9 H16 SING N N 29 A1BOD C3 H6 SING N N 30 A1BOD C3 H5 SING N N 31 A1BOD C2 H4 SING N N 32 A1BOD C2 H3 SING N N 33 A1BOD C1 H SING N N 34 A1BOD N H1 SING N N 35 A1BOD N H2 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BOD SMILES ACDLabs 14.52 "O=C(NCC1CC1)N1CCCC(C1)C(N)=O" A1BOD InChI InChI 1.06 "InChI=1S/C11H19N3O2/c12-10(15)9-2-1-5-14(7-9)11(16)13-6-8-3-4-8/h8-9H,1-7H2,(H2,12,15)(H,13,16)/t9-/m0/s1" A1BOD InChIKey InChI 1.06 FPQQXSDKENBGCM-VIFPVBQESA-N A1BOD SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCCN(C1)C(=O)NCC2CC2" A1BOD SMILES CACTVS 3.385 "NC(=O)[CH]1CCCN(C1)C(=O)NCC2CC2" A1BOD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1C[C@@H](CN(C1)C(=O)NCC2CC2)C(=O)N" A1BOD SMILES "OpenEye OEToolkits" 3.1.0.0 "C1CC(CN(C1)C(=O)NCC2CC2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BOD "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-N~1~-(cyclopropylmethyl)piperidine-1,3-dicarboxamide" A1BOD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-~{N}1-(cyclopropylmethyl)piperidine-1,3-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BOD "Create component" 2025-01-10 RCSB A1BOD "Initial release" 2025-02-26 RCSB #