data_A1BOR # _chem_comp.id A1BOR _chem_comp.name "(3S)-1-[(2H-1,3-benzodioxol-4-yl)methyl]-6-oxopiperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H16 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-10 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.288 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BOR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HXV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BOR N1 N1 N 0 1 N N N N N N 11.574 14.681 22.216 -0.673 -1.053 0.681 N1 A1BOR 1 A1BOR C4 C1 C 0 1 N N N N N N 12.801 14.894 22.750 -1.071 -2.141 0.021 C4 A1BOR 2 A1BOR C5 C2 C 0 1 N N N N N N 10.468 14.296 23.093 0.555 -1.143 1.475 C5 A1BOR 3 A1BOR C6 C3 C 0 1 Y N N N N N 10.285 12.802 23.245 1.736 -0.767 0.618 C6 A1BOR 4 A1BOR C7 C4 C 0 1 Y N N N N N 11.052 11.875 22.538 2.530 -1.754 0.064 C7 A1BOR 5 A1BOR C8 C5 C 0 1 Y N N N N N 10.910 10.507 22.757 3.615 -1.412 -0.722 C8 A1BOR 6 A1BOR C10 C6 C 0 1 Y N N N N N 9.262 10.955 24.410 3.115 0.912 -0.413 C10 A1BOR 7 A1BOR C13 C7 C 0 1 N N N N N N 11.158 14.913 20.826 -1.379 0.222 0.657 C13 A1BOR 8 A1BOR O1 O1 O 0 1 N N N N N N 13.023 14.775 23.947 -0.377 -3.134 0.078 O1 A1BOR 9 A1BOR C3 C8 C 0 1 N N N N N N 13.894 15.357 21.821 -2.334 -2.203 -0.790 C3 A1BOR 10 A1BOR C2 C9 C 0 1 N N N N N N 13.459 15.804 20.418 -2.825 -0.787 -1.099 C2 A1BOR 11 A1BOR C1 C10 C 0 1 N N S N N N 12.357 14.884 19.873 -2.824 0.024 0.195 C1 A1BOR 12 A1BOR C C11 C 0 1 N N N N N N 11.857 15.333 18.508 -3.470 1.364 -0.047 C A1BOR 13 A1BOR O O2 O 0 1 N N N N N N 11.229 16.389 18.371 -2.839 2.384 0.137 O A1BOR 14 A1BOR N N2 N 0 1 N N N N N N 12.097 14.508 17.507 -4.748 1.429 -0.469 N A1BOR 15 A1BOR C11 C12 C 0 1 Y N N N N N 9.366 12.307 24.167 2.022 0.568 0.380 C11 A1BOR 16 A1BOR O2 O3 O 0 1 N N N N N N 8.611 13.023 25.069 1.407 1.713 0.795 O2 A1BOR 17 A1BOR C12 C13 C 0 1 N N N N N N 7.927 12.034 25.855 1.888 2.748 -0.083 C12 A1BOR 18 A1BOR O3 O4 O 0 1 N N N N N N 8.368 10.732 25.437 3.183 2.273 -0.494 O3 A1BOR 19 A1BOR C9 C14 C 0 1 Y N N N N N 10.019 10.033 23.711 3.909 -0.083 -0.959 C9 A1BOR 20 A1BOR H7 H1 H 0 1 N N N N N N 10.654 14.723 24.089 0.490 -0.461 2.323 H7 A1BOR 21 A1BOR H8 H2 H 0 1 N N N N N N 9.539 14.717 22.681 0.679 -2.163 1.837 H8 A1BOR 22 A1BOR H9 H3 H 0 1 N N N N N N 11.768 12.224 21.809 2.304 -2.794 0.247 H9 A1BOR 23 A1BOR H10 H4 H 0 1 N N N N N N 11.498 9.809 22.180 4.233 -2.186 -1.153 H10 A1BOR 24 A1BOR H15 H5 H 0 1 N N N N N N 10.446 14.129 20.530 -1.377 0.654 1.658 H15 A1BOR 25 A1BOR H14 H6 H 0 1 N N N N N N 10.670 15.896 20.758 -0.874 0.901 -0.030 H14 A1BOR 26 A1BOR H6 H7 H 0 1 N N N N N N 14.605 14.526 21.701 -2.139 -2.730 -1.724 H6 A1BOR 27 A1BOR H5 H8 H 0 1 N N N N N N 14.401 16.207 22.300 -3.100 -2.736 -0.227 H5 A1BOR 28 A1BOR H4 H9 H 0 1 N N N N N N 14.326 15.768 19.742 -2.157 -0.316 -1.820 H4 A1BOR 29 A1BOR H3 H10 H 0 1 N N N N N N 13.077 16.834 20.469 -3.835 -0.829 -1.507 H3 A1BOR 30 A1BOR H H11 H 0 1 N N N N N N 12.743 13.856 19.803 -3.374 -0.516 0.966 H A1BOR 31 A1BOR H1 H12 H 0 1 N N N N N N 11.766 14.726 16.589 -5.253 0.614 -0.617 H1 A1BOR 32 A1BOR H2 H13 H 0 1 N N N N N N 12.610 13.664 17.666 -5.164 2.291 -0.625 H2 A1BOR 33 A1BOR H12 H14 H 0 1 N N N N N N 8.161 12.180 26.920 1.229 2.857 -0.944 H12 A1BOR 34 A1BOR H13 H15 H 0 1 N N N N N N 6.841 12.125 25.702 1.977 3.694 0.452 H13 A1BOR 35 A1BOR H11 H16 H 0 1 N N N N N N 9.920 8.975 23.901 4.757 0.181 -1.574 H11 A1BOR 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BOR N C SING N N 1 A1BOR O C DOUB N N 2 A1BOR C C1 SING N N 3 A1BOR C1 C2 SING N N 4 A1BOR C2 C3 SING N N 5 A1BOR C3 C4 SING N N 6 A1BOR C4 O1 DOUB N N 7 A1BOR N1 C4 SING N N 8 A1BOR C5 N1 SING N N 9 A1BOR C6 C5 SING N N 10 A1BOR C6 C7 DOUB Y N 11 A1BOR C7 C8 SING Y N 12 A1BOR C8 C9 DOUB Y N 13 A1BOR C9 C10 SING Y N 14 A1BOR C10 C11 DOUB Y N 15 A1BOR C11 C6 SING Y N 16 A1BOR O2 C11 SING N N 17 A1BOR C12 O2 SING N N 18 A1BOR O3 C12 SING N N 19 A1BOR C10 O3 SING N N 20 A1BOR C13 N1 SING N N 21 A1BOR C1 C13 SING N N 22 A1BOR C5 H7 SING N N 23 A1BOR C5 H8 SING N N 24 A1BOR C7 H9 SING N N 25 A1BOR C8 H10 SING N N 26 A1BOR C13 H15 SING N N 27 A1BOR C13 H14 SING N N 28 A1BOR C3 H6 SING N N 29 A1BOR C3 H5 SING N N 30 A1BOR C2 H4 SING N N 31 A1BOR C2 H3 SING N N 32 A1BOR C1 H SING N N 33 A1BOR N H1 SING N N 34 A1BOR N H2 SING N N 35 A1BOR C12 H12 SING N N 36 A1BOR C12 H13 SING N N 37 A1BOR C9 H11 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BOR SMILES ACDLabs 14.52 "NC(=O)C1CCC(=O)N(C1)Cc1cccc2OCOc12" A1BOR InChI InChI 1.06 "InChI=1S/C14H16N2O4/c15-14(18)10-4-5-12(17)16(7-10)6-9-2-1-3-11-13(9)20-8-19-11/h1-3,10H,4-8H2,(H2,15,18)/t10-/m0/s1" A1BOR InChIKey InChI 1.06 UTPQMVYOLBXEQO-JTQLQIEISA-N A1BOR SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCC(=O)N(C1)Cc2cccc3OCOc23" A1BOR SMILES CACTVS 3.385 "NC(=O)[CH]1CCC(=O)N(C1)Cc2cccc3OCOc23" A1BOR SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2c(c1)OCO2)CN3C[C@H](CCC3=O)C(=O)N" A1BOR SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2c(c1)OCO2)CN3CC(CCC3=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BOR "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(2H-1,3-benzodioxol-4-yl)methyl]-6-oxopiperidine-3-carboxamide" A1BOR "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-(1,3-benzodioxol-4-ylmethyl)-6-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BOR "Create component" 2025-01-10 RCSB A1BOR "Initial release" 2025-02-26 RCSB #