data_A1BP4 # _chem_comp.id A1BP4 _chem_comp.name "(3S)-1-[(3-methoxypyridin-2-yl)methyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-13 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 249.309 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BP4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HXF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BP4 N1 N1 N 0 1 N N N N N N 25.234 13.453 10.448 0.699 -0.530 -0.651 N1 A1BP4 1 A1BP4 C4 C1 C 0 1 Y N N N N N 27.397 11.396 7.668 -3.283 -1.803 0.629 C4 A1BP4 2 A1BP4 C5 C2 C 0 1 Y N N N N N 25.839 11.289 9.368 -1.729 -0.582 -0.555 C5 A1BP4 3 A1BP4 C6 C3 C 0 1 N N N N N N 24.931 12.013 10.342 -0.526 -0.561 -1.462 C6 A1BP4 4 A1BP4 C7 C4 C 0 1 N N N N N N 24.276 14.245 9.654 0.857 -1.776 0.111 C7 A1BP4 5 A1BP4 C8 C5 C 0 1 N N N N N N 22.904 14.367 10.285 2.058 -1.652 1.050 C8 A1BP4 6 A1BP4 C10 C6 C 0 1 N N S N N N 23.969 13.988 12.525 3.109 -0.096 -0.594 C10 A1BP4 7 A1BP4 O1 O1 O 0 1 N N N N N N 24.594 15.591 14.205 1.869 1.707 0.289 O1 A1BP4 8 A1BP4 C11 C7 C 0 1 N N N N N N 24.134 14.469 13.956 2.900 1.071 0.336 C11 A1BP4 9 A1BP4 N2 N2 N 0 1 N N N N N N 23.807 13.605 14.910 3.860 1.408 1.220 N2 A1BP4 10 A1BP4 C9 C8 C 0 1 N N N N N N 23.004 14.878 11.723 3.318 -1.372 0.226 C9 A1BP4 11 A1BP4 C12 C9 C 0 1 N N N N N N 25.346 13.915 11.850 1.877 -0.265 -1.486 C12 A1BP4 12 A1BP4 C1 C10 C 0 1 Y N N N N N 25.850 9.898 9.305 -2.303 0.614 -0.148 C1 A1BP4 13 A1BP4 O O2 O 0 1 N N N N N N 25.039 9.289 10.211 -1.785 1.802 -0.557 O A1BP4 14 A1BP4 C C11 C 0 1 N N N N N N 24.954 7.843 10.182 -2.431 2.988 -0.089 C A1BP4 15 A1BP4 N N3 N 0 1 Y N N N N N 26.613 12.025 8.559 -2.231 -1.736 -0.164 N A1BP4 16 A1BP4 C3 C12 C 0 1 Y N N N N N 27.460 10.028 7.547 -3.906 -0.655 1.080 C3 A1BP4 17 A1BP4 C2 C13 C 0 1 Y N N N N N 26.678 9.254 8.392 -3.413 0.580 0.689 C2 A1BP4 18 A1BP4 H6 H2 H 0 1 N N N N N N 28.010 11.996 7.012 -3.665 -2.769 0.927 H6 A1BP4 19 A1BP4 H8 H3 H 0 1 N N N N N N 23.891 11.897 10.004 -0.564 0.325 -2.095 H8 A1BP4 20 A1BP4 H7 H4 H 0 1 N N N N N N 25.047 11.556 11.336 -0.526 -1.454 -2.086 H7 A1BP4 21 A1BP4 H9 H5 H 0 1 N N N N N N 24.688 15.257 9.524 -0.044 -1.961 0.696 H9 A1BP4 22 A1BP4 H10 H6 H 0 1 N N N N N N 24.163 13.766 8.670 1.019 -2.605 -0.579 H10 A1BP4 23 A1BP4 H11 H7 H 0 1 N N N N N N 22.298 15.070 9.695 1.891 -0.832 1.749 H11 A1BP4 24 A1BP4 H12 H8 H 0 1 N N N N N N 22.420 13.379 10.287 2.185 -2.582 1.604 H12 A1BP4 25 A1BP4 H H9 H 0 1 N N N N N N 23.550 12.971 12.551 3.986 0.086 -1.215 H A1BP4 26 A1BP4 H15 H10 H 0 1 N N N N N N 23.930 13.852 15.871 4.685 0.900 1.258 H15 A1BP4 27 A1BP4 H16 H11 H 0 1 N N N N N N 23.438 12.708 14.667 3.726 2.160 1.819 H16 A1BP4 28 A1BP4 H13 H12 H 0 1 N N N N N N 23.379 15.912 11.718 4.169 -1.240 0.895 H13 A1BP4 29 A1BP4 H14 H13 H 0 1 N N N N N N 22.009 14.851 12.190 3.507 -2.210 -0.445 H14 A1BP4 30 A1BP4 H17 H14 H 0 1 N N N N N N 25.805 14.915 11.862 2.034 -1.101 -2.168 H17 A1BP4 31 A1BP4 H18 H15 H 0 1 N N N N N N 25.982 13.213 12.409 1.717 0.647 -2.061 H18 A1BP4 32 A1BP4 H2 H16 H 0 1 N N N N N N 24.265 7.500 10.968 -1.919 3.863 -0.489 H2 A1BP4 33 A1BP4 H3 H17 H 0 1 N N N N N N 24.581 7.517 9.200 -3.469 2.991 -0.422 H3 A1BP4 34 A1BP4 H1 H18 H 0 1 N N N N N N 25.952 7.414 10.356 -2.398 3.014 1.000 H1 A1BP4 35 A1BP4 H5 H19 H 0 1 N N N N N N 28.103 9.567 6.812 -4.767 -0.719 1.729 H5 A1BP4 36 A1BP4 H4 H20 H 0 1 N N N N N N 26.712 8.176 8.342 -3.882 1.494 1.024 H4 A1BP4 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BP4 C O SING N N 1 A1BP4 O C1 SING N N 2 A1BP4 C1 C2 DOUB Y N 3 A1BP4 C2 C3 SING Y N 4 A1BP4 C3 C4 DOUB Y N 5 A1BP4 C4 N SING Y N 6 A1BP4 N C5 DOUB Y N 7 A1BP4 C1 C5 SING Y N 8 A1BP4 C5 C6 SING N N 9 A1BP4 C6 N1 SING N N 10 A1BP4 N1 C7 SING N N 11 A1BP4 C7 C8 SING N N 12 A1BP4 C8 C9 SING N N 13 A1BP4 C9 C10 SING N N 14 A1BP4 C10 C11 SING N N 15 A1BP4 N2 C11 SING N N 16 A1BP4 C11 O1 DOUB N N 17 A1BP4 C12 C10 SING N N 18 A1BP4 N1 C12 SING N N 19 A1BP4 C4 H6 SING N N 20 A1BP4 C6 H8 SING N N 21 A1BP4 C6 H7 SING N N 22 A1BP4 C7 H9 SING N N 23 A1BP4 C7 H10 SING N N 24 A1BP4 C8 H11 SING N N 25 A1BP4 C8 H12 SING N N 26 A1BP4 C10 H SING N N 27 A1BP4 N2 H15 SING N N 28 A1BP4 N2 H16 SING N N 29 A1BP4 C9 H13 SING N N 30 A1BP4 C9 H14 SING N N 31 A1BP4 C12 H17 SING N N 32 A1BP4 C12 H18 SING N N 33 A1BP4 C H2 SING N N 34 A1BP4 C H3 SING N N 35 A1BP4 C H1 SING N N 36 A1BP4 C3 H5 SING N N 37 A1BP4 C2 H4 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BP4 SMILES ACDLabs 14.52 "NC(=O)C1CCCN(Cc2ncccc2OC)C1" A1BP4 InChI InChI 1.06 "InChI=1S/C13H19N3O2/c1-18-12-5-2-6-15-11(12)9-16-7-3-4-10(8-16)13(14)17/h2,5-6,10H,3-4,7-9H2,1H3,(H2,14,17)/t10-/m0/s1" A1BP4 InChIKey InChI 1.06 NASHQEPHZGSRGM-JTQLQIEISA-N A1BP4 SMILES_CANONICAL CACTVS 3.385 "COc1cccnc1CN2CCC[C@@H](C2)C(N)=O" A1BP4 SMILES CACTVS 3.385 "COc1cccnc1CN2CCC[CH](C2)C(N)=O" A1BP4 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COc1cccnc1CN2CCC[C@@H](C2)C(=O)N" A1BP4 SMILES "OpenEye OEToolkits" 3.1.0.0 "COc1cccnc1CN2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BP4 "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(3-methoxypyridin-2-yl)methyl]piperidine-3-carboxamide" A1BP4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[(3-methoxypyridin-2-yl)methyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BP4 "Create component" 2025-01-13 RCSB A1BP4 "Initial release" 2025-02-26 RCSB #