data_A1BPH # _chem_comp.id A1BPH _chem_comp.name "(3S)-1-{[2-(cyanomethyl)phenyl]acetyl}piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H19 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-13 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 285.341 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BPH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HXZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BPH N1 N1 N 0 1 N N N N N N 25.158 13.910 10.480 1.186 0.168 0.853 N1 A1BPH 1 A1BPH C4 C1 C 0 1 Y N N N N N 28.079 9.245 7.130 -4.872 1.485 -0.392 C4 A1BPH 2 A1BPH C5 C2 C 0 1 Y N N N N N 28.435 10.528 6.814 -4.371 1.880 0.835 C5 A1BPH 3 A1BPH C6 C3 C 0 1 Y N N N N N 27.691 11.591 7.299 -3.197 1.326 1.312 C6 A1BPH 4 A1BPH C7 C4 C 0 1 Y N N N N N 26.563 11.378 8.089 -2.525 0.379 0.563 C7 A1BPH 5 A1BPH C8 C5 C 0 1 N N N N N N 25.734 12.569 8.519 -1.245 -0.224 1.084 C8 A1BPH 6 A1BPH C10 C6 C 0 1 N N N N N N 24.127 14.644 9.724 1.423 -0.964 1.759 C10 A1BPH 7 A1BPH C13 C7 C 0 1 N N S N N N 23.975 14.211 12.608 3.286 -0.115 -0.357 C13 A1BPH 8 A1BPH C15 C8 C 0 1 N N N N N N 25.313 14.337 11.874 2.343 0.892 0.309 C15 A1BPH 9 A1BPH O1 O1 O 0 1 N N N N N N 24.547 15.782 14.332 5.618 0.248 -0.363 O1 A1BPH 10 A1BPH C14 C9 C 0 1 N N N N N N 24.120 14.657 14.053 4.541 0.590 -0.804 C14 A1BPH 11 A1BPH N2 N2 N 0 1 N N N N N N 23.814 13.751 14.977 4.466 1.600 -1.692 N2 A1BPH 12 A1BPH C12 C10 C 0 1 N N N N N N 22.863 14.985 11.880 3.646 -1.212 0.647 C12 A1BPH 13 A1BPH C11 C11 C 0 1 N N N N N N 22.765 14.551 10.413 2.376 -1.950 1.077 C11 A1BPH 14 A1BPH C9 C12 C 0 1 N N N N N N 25.918 12.907 9.987 -0.069 0.533 0.522 C9 A1BPH 15 A1BPH O O2 O 0 1 N N N N N N 26.734 12.315 10.675 -0.251 1.469 -0.227 O A1BPH 16 A1BPH C2 C13 C 0 1 Y N N N N N 26.198 10.063 8.409 -3.026 -0.015 -0.663 C2 A1BPH 17 A1BPH C1 C14 C 0 1 N N N N N N 24.935 9.769 9.199 -2.296 -1.053 -1.477 C1 A1BPH 18 A1BPH C C15 C 0 1 N N N N N N 24.709 8.340 9.397 -2.694 -2.397 -1.028 C A1BPH 19 A1BPH N N3 N 0 1 N N N N N N 24.552 7.229 9.567 -3.000 -3.435 -0.681 N A1BPH 20 A1BPH C3 C16 C 0 1 Y N N N N N 26.976 9.010 7.939 -4.202 0.533 -1.138 C3 A1BPH 21 A1BPH H4 H1 H 0 1 N N N N N N 28.656 8.415 6.750 -5.788 1.918 -0.765 H4 A1BPH 22 A1BPH H5 H2 H 0 1 N N N N N N 29.295 10.712 6.187 -4.896 2.621 1.419 H5 A1BPH 23 A1BPH H6 H3 H 0 1 N N N N N N 27.990 12.601 7.061 -2.805 1.635 2.270 H6 A1BPH 24 A1BPH H7 H4 H 0 1 N N N N N N 26.030 13.441 7.917 -1.231 -0.162 2.172 H7 A1BPH 25 A1BPH H8 H5 H 0 1 N N N N N N 24.673 12.343 8.340 -1.185 -1.268 0.778 H8 A1BPH 26 A1BPH H9 H6 H 0 1 N N N N N N 24.421 15.702 9.651 1.871 -0.603 2.685 H9 A1BPH 27 A1BPH H10 H7 H 0 1 N N N N N N 24.048 14.214 8.714 0.478 -1.461 1.977 H10 A1BPH 28 A1BPH H H8 H 0 1 N N N N N N 23.694 13.148 12.610 2.792 -0.560 -1.221 H A1BPH 29 A1BPH H17 H9 H 0 1 N N N N N N 25.646 15.385 11.900 2.005 1.619 -0.429 H17 A1BPH 30 A1BPH H18 H10 H 0 1 N N N N N N 26.062 13.702 12.369 2.867 1.404 1.116 H18 A1BPH 31 A1BPH H15 H11 H 0 1 N N N N N N 23.927 13.968 15.947 3.605 1.874 -2.044 H15 A1BPH 32 A1BPH H16 H12 H 0 1 N N N N N N 23.471 12.853 14.702 5.274 2.054 -1.980 H16 A1BPH 33 A1BPH H13 H13 H 0 1 N N N N N N 23.086 16.061 11.923 4.337 -1.917 0.184 H13 A1BPH 34 A1BPH H14 H14 H 0 1 N N N N N N 21.902 14.789 12.378 4.118 -0.763 1.521 H14 A1BPH 35 A1BPH H11 H15 H 0 1 N N N N N N 22.052 15.206 9.891 2.636 -2.746 1.774 H11 A1BPH 36 A1BPH H12 H16 H 0 1 N N N N N N 22.409 13.511 10.368 1.890 -2.378 0.200 H12 A1BPH 37 A1BPH H2 H17 H 0 1 N N N N N N 24.075 10.188 8.656 -2.549 -0.933 -2.530 H2 A1BPH 38 A1BPH H1 H18 H 0 1 N N N N N N 25.017 10.251 10.184 -1.222 -0.928 -1.345 H1 A1BPH 39 A1BPH H3 H19 H 0 1 N N N N N N 26.718 7.996 8.207 -4.594 0.225 -2.096 H3 A1BPH 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BPH N C TRIP N N 1 A1BPH C C1 SING N N 2 A1BPH C1 C2 SING N N 3 A1BPH C2 C3 DOUB Y N 4 A1BPH C3 C4 SING Y N 5 A1BPH C4 C5 DOUB Y N 6 A1BPH C5 C6 SING Y N 7 A1BPH C6 C7 DOUB Y N 8 A1BPH C2 C7 SING Y N 9 A1BPH C7 C8 SING N N 10 A1BPH C8 C9 SING N N 11 A1BPH O C9 DOUB N N 12 A1BPH C9 N1 SING N N 13 A1BPH N1 C10 SING N N 14 A1BPH C10 C11 SING N N 15 A1BPH C11 C12 SING N N 16 A1BPH C12 C13 SING N N 17 A1BPH C13 C14 SING N N 18 A1BPH N2 C14 SING N N 19 A1BPH C14 O1 DOUB N N 20 A1BPH C15 C13 SING N N 21 A1BPH N1 C15 SING N N 22 A1BPH C4 H4 SING N N 23 A1BPH C5 H5 SING N N 24 A1BPH C6 H6 SING N N 25 A1BPH C8 H7 SING N N 26 A1BPH C8 H8 SING N N 27 A1BPH C10 H9 SING N N 28 A1BPH C10 H10 SING N N 29 A1BPH C13 H SING N N 30 A1BPH C15 H17 SING N N 31 A1BPH C15 H18 SING N N 32 A1BPH N2 H15 SING N N 33 A1BPH N2 H16 SING N N 34 A1BPH C12 H13 SING N N 35 A1BPH C12 H14 SING N N 36 A1BPH C11 H11 SING N N 37 A1BPH C11 H12 SING N N 38 A1BPH C1 H2 SING N N 39 A1BPH C1 H1 SING N N 40 A1BPH C3 H3 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BPH SMILES ACDLabs 14.52 "O=C(Cc1ccccc1CC#N)N1CCCC(C1)C(N)=O" A1BPH InChI InChI 1.06 "InChI=1S/C16H19N3O2/c17-8-7-12-4-1-2-5-13(12)10-15(20)19-9-3-6-14(11-19)16(18)21/h1-2,4-5,14H,3,6-7,9-11H2,(H2,18,21)/t14-/m0/s1" A1BPH InChIKey InChI 1.06 SPTOPDLRNCGQBI-AWEZNQCLSA-N A1BPH SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CCCN(C1)C(=O)Cc2ccccc2CC#N" A1BPH SMILES CACTVS 3.385 "NC(=O)[CH]1CCCN(C1)C(=O)Cc2ccccc2CC#N" A1BPH SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(c(c1)CC#N)CC(=O)N2CCC[C@@H](C2)C(=O)N" A1BPH SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(c(c1)CC#N)CC(=O)N2CCCC(C2)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BPH "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-{[2-(cyanomethyl)phenyl]acetyl}piperidine-3-carboxamide" A1BPH "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-[2-(cyanomethyl)phenyl]ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BPH "Create component" 2025-01-13 RCSB A1BPH "Initial release" 2025-02-26 RCSB #