data_A1BRD # _chem_comp.id A1BRD _chem_comp.name "(3S)-1-[(7R)-2-methoxy-6,7-dihydro-5H-cyclopenta[b]pyridine-7-carbonyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H21 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-14 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 303.356 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BRD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HWK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BRD N1 N1 N 0 1 N N N N N N 9.991 14.423 22.361 1.080 0.975 0.783 N1 A1BRD 1 A1BRD C4 C1 C 0 1 Y N N N N N 7.771 11.797 25.614 -2.969 0.956 -0.641 C4 A1BRD 2 A1BRD C5 C2 C 0 1 Y N N N N N 8.809 11.803 24.677 -2.051 0.406 0.233 C5 A1BRD 3 A1BRD C6 C3 C 0 1 N N S N N N 9.299 13.207 24.403 -1.327 1.512 0.972 C6 A1BRD 4 A1BRD C7 C4 C 0 1 N N N N N N 9.275 13.410 22.889 0.041 1.731 0.377 C7 A1BRD 5 A1BRD C8 C5 C 0 1 N N N N N N 11.013 15.216 23.060 0.920 0.007 1.877 C8 A1BRD 6 A1BRD C10 C6 C 0 1 N N N N N N 12.169 15.497 20.840 2.820 -1.253 0.856 C10 A1BRD 7 A1BRD C13 C7 C 0 1 N N N N N N 9.787 14.837 20.968 2.394 1.100 0.137 C13 A1BRD 8 A1BRD C15 C8 C 0 1 N N N N N N 7.526 13.182 26.155 -2.928 2.465 -0.550 C15 A1BRD 9 A1BRD O2 O1 O 0 1 N N N N N N 10.512 16.085 18.329 4.829 0.866 -0.893 O2 A1BRD 10 A1BRD C12 C9 C 0 1 N N N N N N 10.934 14.984 18.695 4.250 -0.199 -0.876 C12 A1BRD 11 A1BRD N2 N2 N 0 1 N N N N N N 11.281 14.028 17.847 4.860 -1.306 -1.344 N2 A1BRD 12 A1BRD C11 C10 C 0 1 N N S N N N 11.080 14.646 20.169 2.848 -0.286 -0.329 C11 A1BRD 13 A1BRD C9 C11 C 0 1 N N N N N N 12.340 15.142 22.322 1.391 -1.367 1.391 C9 A1BRD 14 A1BRD O1 O2 O 0 1 N N N N N N 8.602 12.679 22.186 0.205 2.586 -0.467 O1 A1BRD 15 A1BRD C14 C12 C 0 1 N N N N N N 8.253 14.094 25.148 -2.202 2.769 0.778 C14 A1BRD 16 A1BRD C3 C13 C 0 1 Y N N N N N 7.194 10.571 25.918 -3.753 0.119 -1.423 C3 A1BRD 17 A1BRD C2 C14 C 0 1 Y N N N N N 7.656 9.420 25.305 -3.588 -1.250 -1.301 C2 A1BRD 18 A1BRD N N3 N 0 1 Y N N N N N 9.295 10.702 24.084 -1.915 -0.908 0.320 N A1BRD 19 A1BRD C1 C15 C 0 1 Y N N N N N 8.729 9.541 24.399 -2.647 -1.736 -0.404 C1 A1BRD 20 A1BRD O O3 O 0 1 N N N N N N 9.172 8.379 23.864 -2.473 -3.075 -0.272 O A1BRD 21 A1BRD C C16 C 0 1 N N N N N N 10.390 8.398 23.114 -1.572 -3.516 0.746 C A1BRD 22 A1BRD H H1 H 0 1 N N N N N N 10.308 13.368 24.811 -1.243 1.268 2.031 H A1BRD 23 A1BRD H8 H2 H 0 1 N N N N N N 10.685 16.265 23.111 1.522 0.318 2.731 H8 A1BRD 24 A1BRD H7 H3 H 0 1 N N N N N N 11.143 14.822 24.079 -0.129 -0.047 2.166 H7 A1BRD 25 A1BRD H11 H4 H 0 1 N N N N N N 11.892 16.558 20.758 3.167 -2.235 0.533 H11 A1BRD 26 A1BRD H12 H5 H 0 1 N N N N N N 13.124 15.326 20.321 3.474 -0.879 1.645 H12 A1BRD 27 A1BRD H15 H6 H 0 1 N N N N N N 9.496 15.898 20.942 2.316 1.768 -0.722 H15 A1BRD 28 A1BRD H16 H7 H 0 1 N N N N N N 8.989 14.227 20.520 3.115 1.501 0.849 H16 A1BRD 29 A1BRD H19 H8 H 0 1 N N N N N N 7.952 13.291 27.163 -2.369 2.880 -1.389 H19 A1BRD 30 A1BRD H20 H9 H 0 1 N N N N N N 6.450 13.408 26.185 -3.939 2.871 -0.530 H20 A1BRD 31 A1BRD H14 H10 H 0 1 N N N N N N 11.206 14.182 16.862 5.763 -1.250 -1.695 H14 A1BRD 32 A1BRD H13 H11 H 0 1 N N N N N N 11.618 13.152 18.192 4.397 -2.158 -1.329 H13 A1BRD 33 A1BRD H1 H12 H 0 1 N N N N N N 11.377 13.590 20.251 2.175 -0.646 -1.108 H1 A1BRD 34 A1BRD H9 H13 H 0 1 N N N N N N 13.046 15.849 22.781 1.368 -2.074 2.221 H9 A1BRD 35 A1BRD H10 H14 H 0 1 N N N N N N 12.739 14.120 22.403 0.732 -1.717 0.596 H10 A1BRD 36 A1BRD H17 H15 H 0 1 N N N N N N 8.761 14.913 25.678 -2.916 2.874 1.595 H17 A1BRD 37 A1BRD H18 H16 H 0 1 N N N N N N 7.533 14.513 24.430 -1.583 3.662 0.686 H18 A1BRD 38 A1BRD H6 H17 H 0 1 N N N N N N 6.386 10.516 26.632 -4.477 0.527 -2.112 H6 A1BRD 39 A1BRD H5 H18 H 0 1 N N N N N N 7.209 8.459 25.514 -4.182 -1.929 -1.895 H5 A1BRD 40 A1BRD H3 H19 H 0 1 N N N N N N 10.612 7.384 22.749 -0.562 -3.185 0.505 H3 A1BRD 41 A1BRD H4 H20 H 0 1 N N N N N N 10.283 9.081 22.258 -1.874 -3.095 1.705 H4 A1BRD 42 A1BRD H2 H21 H 0 1 N N N N N N 11.212 8.744 23.758 -1.594 -4.604 0.804 H2 A1BRD 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BRD C O SING N N 1 A1BRD O C1 SING N N 2 A1BRD C1 C2 DOUB Y N 3 A1BRD C2 C3 SING Y N 4 A1BRD C3 C4 DOUB Y N 5 A1BRD C4 C5 SING Y N 6 A1BRD N C5 DOUB Y N 7 A1BRD C1 N SING Y N 8 A1BRD C5 C6 SING N N 9 A1BRD C6 C7 SING N N 10 A1BRD O1 C7 DOUB N N 11 A1BRD C7 N1 SING N N 12 A1BRD N1 C8 SING N N 13 A1BRD C8 C9 SING N N 14 A1BRD C9 C10 SING N N 15 A1BRD C10 C11 SING N N 16 A1BRD C11 C12 SING N N 17 A1BRD N2 C12 SING N N 18 A1BRD C12 O2 DOUB N N 19 A1BRD C13 C11 SING N N 20 A1BRD N1 C13 SING N N 21 A1BRD C14 C6 SING N N 22 A1BRD C15 C14 SING N N 23 A1BRD C4 C15 SING N N 24 A1BRD C6 H SING N N 25 A1BRD C8 H8 SING N N 26 A1BRD C8 H7 SING N N 27 A1BRD C10 H11 SING N N 28 A1BRD C10 H12 SING N N 29 A1BRD C13 H15 SING N N 30 A1BRD C13 H16 SING N N 31 A1BRD C15 H19 SING N N 32 A1BRD C15 H20 SING N N 33 A1BRD N2 H14 SING N N 34 A1BRD N2 H13 SING N N 35 A1BRD C11 H1 SING N N 36 A1BRD C9 H9 SING N N 37 A1BRD C9 H10 SING N N 38 A1BRD C14 H17 SING N N 39 A1BRD C14 H18 SING N N 40 A1BRD C3 H6 SING N N 41 A1BRD C2 H5 SING N N 42 A1BRD C H3 SING N N 43 A1BRD C H4 SING N N 44 A1BRD C H2 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BRD SMILES ACDLabs 14.52 "O=C(C1CCc2ccc(OC)nc21)N1CCCC(C1)C(N)=O" A1BRD InChI InChI 1.06 "InChI=1S/C16H21N3O3/c1-22-13-7-5-10-4-6-12(14(10)18-13)16(21)19-8-2-3-11(9-19)15(17)20/h5,7,11-12H,2-4,6,8-9H2,1H3,(H2,17,20)/t11-,12+/m0/s1" A1BRD InChIKey InChI 1.06 ZDYXIBCIXYHKOA-NWDGAFQWSA-N A1BRD SMILES_CANONICAL CACTVS 3.385 "COc1ccc2CC[C@H](C(=O)N3CCC[C@@H](C3)C(N)=O)c2n1" A1BRD SMILES CACTVS 3.385 "COc1ccc2CC[CH](C(=O)N3CCC[CH](C3)C(N)=O)c2n1" A1BRD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COc1ccc2c(n1)[C@H](CC2)C(=O)N3CCC[C@@H](C3)C(=O)N" A1BRD SMILES "OpenEye OEToolkits" 3.1.0.0 "COc1ccc2c(n1)C(CC2)C(=O)N3CCCC(C3)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BRD "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(7R)-2-methoxy-6,7-dihydro-5H-cyclopenta[b]pyridine-7-carbonyl]piperidine-3-carboxamide" A1BRD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[[(7~{S})-2-methoxy-6,7-dihydro-5~{H}-cyclopenta[b]pyridin-7-yl]carbonyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BRD "Create component" 2025-01-14 RCSB A1BRD "Initial release" 2025-02-26 RCSB #