data_A1BRL # _chem_comp.id A1BRL _chem_comp.name "(3S)-1-[(2-methyl-1H-1,3-benzimidazol-1-yl)acetyl]piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H20 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-14 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 300.356 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BRL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HUX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BRL N1 N1 N 0 1 Y N N N N N 9.536 11.085 24.570 2.122 -0.798 0.237 N1 A1BRL 1 A1BRL N3 N2 N 0 1 N N N N N N 11.719 14.141 18.029 -4.570 1.490 -2.019 N3 A1BRL 2 A1BRL C4 C1 C 0 1 Y N N N N N 6.181 10.442 26.841 4.776 2.359 0.141 C4 A1BRL 3 A1BRL C5 C2 C 0 1 Y N N N N N 6.650 11.752 26.825 3.617 2.571 0.874 C5 A1BRL 4 A1BRL C6 C3 C 0 1 Y N N N N N 7.797 12.089 26.125 2.662 1.582 0.973 C6 A1BRL 5 A1BRL C7 C4 C 0 1 Y N N N N N 8.438 11.083 25.420 2.859 0.366 0.335 C7 A1BRL 6 A1BRL C8 C5 C 0 1 N N N N N N 10.357 12.251 24.273 0.815 -1.053 0.849 C8 A1BRL 7 A1BRL C10 C6 C 0 1 N N N N N N 11.650 14.680 23.359 -1.931 -1.338 1.556 C10 A1BRL 8 A1BRL C13 C7 C 0 1 N N S N N N 11.589 14.489 20.416 -3.583 0.586 0.061 C13 A1BRL 9 A1BRL C15 C8 C 0 1 N N N N N N 10.324 14.597 21.271 -2.642 -0.376 -0.671 C15 A1BRL 10 A1BRL O1 O1 O 0 1 N N N N N N 10.863 16.083 18.773 -5.886 0.635 -0.452 O1 A1BRL 11 A1BRL C14 C9 C 0 1 N N N N N N 11.361 14.976 18.995 -4.763 0.905 -0.820 C14 A1BRL 12 A1BRL C12 C10 C 0 1 N N N N N N 12.665 15.313 21.139 -4.074 -0.072 1.353 C12 A1BRL 13 A1BRL C11 C11 C 0 1 N N N N N N 12.938 14.765 22.541 -2.879 -0.366 2.264 C11 A1BRL 14 A1BRL N2 N3 N 0 1 N N N N N N 10.574 14.026 22.596 -1.568 -0.778 0.247 N2 A1BRL 15 A1BRL C9 C12 C 0 1 N N N N N N 9.835 12.990 23.042 -0.275 -0.635 -0.104 C9 A1BRL 16 A1BRL O O2 O 0 1 N N N N N N 8.793 12.645 22.496 0.011 -0.171 -1.188 O A1BRL 17 A1BRL C1 C13 C 0 1 Y N N N N N 9.677 9.809 24.091 2.832 -1.663 -0.538 C1 A1BRL 18 A1BRL C C14 C 0 1 N N N N N N 10.760 9.410 23.160 2.390 -3.056 -0.904 C A1BRL 19 A1BRL C2 C15 C 0 1 Y N N N N N 7.973 9.774 25.410 4.031 0.146 -0.409 C2 A1BRL 20 A1BRL N N4 N 0 1 Y N N N N N 8.762 8.998 24.563 3.949 -1.112 -0.914 N A1BRL 21 A1BRL C3 C16 C 0 1 Y N N N N N 6.841 9.439 26.149 4.989 1.159 -0.498 C3 A1BRL 22 A1BRL H17 H1 H 0 1 N N N N N N 11.589 14.399 17.072 -3.671 1.706 -2.314 H17 A1BRL 23 A1BRL H16 H2 H 0 1 N N N N N N 12.119 13.254 18.258 -5.329 1.695 -2.586 H16 A1BRL 24 A1BRL H5 H3 H 0 1 N N N N N N 5.289 10.203 27.401 5.516 3.142 0.071 H5 A1BRL 25 A1BRL H6 H4 H 0 1 N N N N N N 6.112 12.517 27.366 3.462 3.518 1.370 H6 A1BRL 26 A1BRL H7 H5 H 0 1 N N N N N N 8.178 13.100 26.129 1.762 1.754 1.545 H7 A1BRL 27 A1BRL H8 H6 H 0 1 N N N N N N 10.339 12.933 25.136 0.718 -2.115 1.069 H8 A1BRL 28 A1BRL H9 H7 H 0 1 N N N N N N 11.391 11.925 24.085 0.729 -0.481 1.772 H9 A1BRL 29 A1BRL H10 H8 H 0 1 N N N N N N 11.330 15.697 23.630 -1.032 -1.474 2.157 H10 A1BRL 30 A1BRL H11 H9 H 0 1 N N N N N N 11.844 14.100 24.274 -2.427 -2.299 1.420 H11 A1BRL 31 A1BRL H H10 H 0 1 N N N N N N 11.909 13.437 20.387 -3.049 1.505 0.301 H A1BRL 32 A1BRL H18 H11 H 0 1 N N N N N N 10.043 15.655 21.376 -3.198 -1.257 -0.991 H18 A1BRL 33 A1BRL H19 H12 H 0 1 N N N N N N 9.505 14.047 20.784 -2.215 0.123 -1.541 H19 A1BRL 34 A1BRL H14 H13 H 0 1 N N N N N N 12.322 16.355 21.222 -4.763 0.601 1.864 H14 A1BRL 35 A1BRL H15 H14 H 0 1 N N N N N N 13.596 15.279 20.554 -4.586 -1.003 1.114 H15 A1BRL 36 A1BRL H12 H15 H 0 1 N N N N N N 13.647 15.431 23.055 -3.232 -0.813 3.193 H12 A1BRL 37 A1BRL H13 H16 H 0 1 N N N N N N 13.376 13.760 22.455 -2.352 0.562 2.483 H13 A1BRL 38 A1BRL H2 H17 H 0 1 N N N N N N 10.672 8.337 22.933 2.747 -3.760 -0.152 H2 A1BRL 39 A1BRL H3 H18 H 0 1 N N N N N N 10.675 9.990 22.229 1.301 -3.092 -0.947 H3 A1BRL 40 A1BRL H1 H19 H 0 1 N N N N N N 11.736 9.607 23.627 2.801 -3.323 -1.877 H1 A1BRL 41 A1BRL H4 H20 H 0 1 N N N N N N 6.485 8.420 26.182 5.893 1.001 -1.067 H4 A1BRL 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BRL C C1 SING N N 1 A1BRL C1 N DOUB Y N 2 A1BRL N C2 SING Y N 3 A1BRL C2 C3 DOUB Y N 4 A1BRL C3 C4 SING Y N 5 A1BRL C4 C5 DOUB Y N 6 A1BRL C5 C6 SING Y N 7 A1BRL C6 C7 DOUB Y N 8 A1BRL C2 C7 SING Y N 9 A1BRL C7 N1 SING Y N 10 A1BRL C1 N1 SING Y N 11 A1BRL N1 C8 SING N N 12 A1BRL C8 C9 SING N N 13 A1BRL O C9 DOUB N N 14 A1BRL C9 N2 SING N N 15 A1BRL N2 C10 SING N N 16 A1BRL C10 C11 SING N N 17 A1BRL C11 C12 SING N N 18 A1BRL C12 C13 SING N N 19 A1BRL C13 C14 SING N N 20 A1BRL N3 C14 SING N N 21 A1BRL C14 O1 DOUB N N 22 A1BRL C15 C13 SING N N 23 A1BRL N2 C15 SING N N 24 A1BRL N3 H17 SING N N 25 A1BRL N3 H16 SING N N 26 A1BRL C4 H5 SING N N 27 A1BRL C5 H6 SING N N 28 A1BRL C6 H7 SING N N 29 A1BRL C8 H8 SING N N 30 A1BRL C8 H9 SING N N 31 A1BRL C10 H10 SING N N 32 A1BRL C10 H11 SING N N 33 A1BRL C13 H SING N N 34 A1BRL C15 H18 SING N N 35 A1BRL C15 H19 SING N N 36 A1BRL C12 H14 SING N N 37 A1BRL C12 H15 SING N N 38 A1BRL C11 H12 SING N N 39 A1BRL C11 H13 SING N N 40 A1BRL C H2 SING N N 41 A1BRL C H3 SING N N 42 A1BRL C H1 SING N N 43 A1BRL C3 H4 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BRL SMILES ACDLabs 14.52 "O=C(Cn1c2ccccc2nc1C)N1CCCC(C1)C(N)=O" A1BRL InChI InChI 1.06 "InChI=1S/C16H20N4O2/c1-11-18-13-6-2-3-7-14(13)20(11)10-15(21)19-8-4-5-12(9-19)16(17)22/h2-3,6-7,12H,4-5,8-10H2,1H3,(H2,17,22)/t12-/m0/s1" A1BRL InChIKey InChI 1.06 PRVGSTBOTABTCE-LBPRGKRZSA-N A1BRL SMILES_CANONICAL CACTVS 3.385 "Cc1nc2ccccc2n1CC(=O)N3CCC[C@@H](C3)C(N)=O" A1BRL SMILES CACTVS 3.385 "Cc1nc2ccccc2n1CC(=O)N3CCC[CH](C3)C(N)=O" A1BRL SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1nc2ccccc2n1CC(=O)N3CCC[C@@H](C3)C(=O)N" A1BRL SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1nc2ccccc2n1CC(=O)N3CCCC(C3)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BRL "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-1-[(2-methyl-1H-1,3-benzimidazol-1-yl)acetyl]piperidine-3-carboxamide" A1BRL "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-1-[2-(2-methylbenzimidazol-1-yl)ethanoyl]piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BRL "Create component" 2025-01-14 RCSB A1BRL "Initial release" 2025-02-26 RCSB #