data_A1BT7 # _chem_comp.id A1BT7 _chem_comp.name ;2'-deoxy-5-fluoro-5-methyl-5,6-dihydrocytidine 5'-(dihydrogen phosphate) ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 F N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-22 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 341.230 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BT7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MYC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BT7 P P1 P 0 1 N N N N N N 186.491 192.489 243.211 4.285 -1.174 0.000 P A1BT7 1 A1BT7 O1P O1 O 0 1 N N N N N N 186.330 192.232 241.731 5.423 -0.299 0.360 O1P A1BT7 2 A1BT7 O2P O2 O 0 1 N N N N N N 185.661 193.674 243.643 3.829 -2.020 1.292 O2P A1BT7 3 A1BT7 "O5'" O3 O 0 1 N N N N N N 188.082 192.681 243.590 3.055 -0.271 -0.512 "O5'" A1BT7 4 A1BT7 "C5'" C1 C 0 1 N N N N N N 188.854 193.517 242.774 2.497 0.794 0.261 "C5'" A1BT7 5 A1BT7 "C4'" C2 C 0 1 N N R N N N 188.468 194.991 243.027 1.348 1.440 -0.517 "C4'" A1BT7 6 A1BT7 "O4'" O4 O 0 1 N N N N N N 189.106 195.475 244.380 0.250 0.515 -0.664 "O4'" A1BT7 7 A1BT7 "C3'" C3 C 0 1 N N S N N N 188.946 195.760 242.105 0.731 2.609 0.293 "C3'" A1BT7 8 A1BT7 "O3'" O5 O 0 1 N N N N N N 188.027 196.864 241.856 1.444 3.825 0.057 "O3'" A1BT7 9 A1BT7 "C2'" C4 C 0 1 N N N N N N 190.360 196.348 242.682 -0.701 2.687 -0.290 "C2'" A1BT7 10 A1BT7 "C1'" C5 C 0 1 N N R N N N 190.213 196.465 243.990 -0.927 1.299 -0.922 "C1'" A1BT7 11 A1BT7 N1 N1 N 0 1 N N N N N N 191.463 196.166 244.721 -2.096 0.659 -0.312 N1 A1BT7 12 A1BT7 C2 C6 C 0 1 N N N N N N 191.412 195.796 246.189 -2.072 0.325 0.990 C2 A1BT7 13 A1BT7 O2 O6 O 0 1 N N N N N N 190.376 195.739 246.758 -1.112 0.641 1.668 O2 A1BT7 14 A1BT7 N3 N2 N 0 1 N N N N N N 192.690 195.495 246.946 -3.084 -0.348 1.558 N3 A1BT7 15 A1BT7 C4 C7 C 0 1 N N N N N N 193.974 195.558 246.268 -3.997 -0.946 0.839 C4 A1BT7 16 A1BT7 N4 N3 N 0 1 N N N N N N 195.031 195.311 246.892 -5.020 -1.583 1.449 N4 A1BT7 17 A1BT7 C5 C8 C 0 1 N N S N N N 194.029 195.941 244.803 -3.915 -0.931 -0.666 C5 A1BT7 18 A1BT7 C6 C9 C 0 1 N N N N N N 192.746 196.224 244.045 -3.287 0.392 -1.123 C6 A1BT7 19 A1BT7 CM5 C10 C 0 1 N N N N N N 194.920 197.291 244.715 -3.055 -2.102 -1.144 CM5 A1BT7 20 A1BT7 F F1 F 0 1 N N N N N N 194.718 194.961 244.151 -5.202 -1.045 -1.205 F A1BT7 21 A1BT7 O1 O7 O 0 1 N Y N N N N 186.024 191.198 244.048 4.734 -2.183 -1.171 O1 A1BT7 22 A1BT7 H1 H1 H 0 1 N N N N N N 185.198 194.027 242.893 3.086 -2.617 1.129 H1 A1BT7 23 A1BT7 H2 H2 H 0 1 N N N N N N 188.672 193.267 241.718 2.119 0.399 1.204 H2 A1BT7 24 A1BT7 H3 H3 H 0 1 N N N N N N 189.919 193.373 243.007 3.266 1.540 0.460 H3 A1BT7 25 A1BT7 H4 H4 H 0 1 N N N N N N 187.374 195.061 243.113 1.693 1.785 -1.492 H4 A1BT7 26 A1BT7 H5 H5 H 0 1 N N N N N N 189.159 195.224 241.168 0.706 2.375 1.357 H5 A1BT7 27 A1BT7 H6 H6 H 0 1 N N N N N N 187.206 196.524 241.521 1.044 4.602 0.470 H6 A1BT7 28 A1BT7 H7 H7 H 0 1 N N N N N N 191.182 195.654 242.453 -1.426 2.868 0.503 H7 A1BT7 29 A1BT7 H8 H8 H 0 1 N N N N N N 190.574 197.330 242.235 -0.762 3.466 -1.050 H8 A1BT7 30 A1BT7 H9 H9 H 0 1 N N N N N N 189.877 197.477 244.262 -1.077 1.401 -1.996 H9 A1BT7 31 A1BT7 H10 H10 H 0 1 N N N N N N 194.994 195.069 247.862 -5.076 -1.594 2.417 H10 A1BT7 32 A1BT7 H11 H11 H 0 1 N N N N N N 195.912 195.356 246.421 -5.700 -2.028 0.918 H11 A1BT7 33 A1BT7 H12 H12 H 0 1 N N N N N N 192.701 195.498 243.220 -4.004 1.203 -0.996 H12 A1BT7 34 A1BT7 H13 H13 H 0 1 N N N N N N 192.840 197.240 243.634 -3.003 0.317 -2.173 H13 A1BT7 35 A1BT7 H14 H14 H 0 1 N N N N N N 195.868 197.141 245.252 -3.503 -3.040 -0.814 H14 A1BT7 36 A1BT7 H15 H15 H 0 1 N N N N N N 195.129 197.524 243.660 -2.997 -2.091 -2.232 H15 A1BT7 37 A1BT7 H16 H16 H 0 1 N N N N N N 194.368 198.125 245.173 -2.053 -2.011 -0.725 H16 A1BT7 38 A1BT7 H17 H17 H 0 1 N N N N N N 185.736 190.519 243.449 5.473 -2.759 -0.932 H17 A1BT7 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BT7 O1P P DOUB N N 1 A1BT7 "O3'" "C3'" SING N N 2 A1BT7 "C3'" "C2'" SING N N 3 A1BT7 "C3'" "C4'" SING N N 4 A1BT7 "C2'" "C1'" SING N N 5 A1BT7 "C5'" "C4'" SING N N 6 A1BT7 "C5'" "O5'" SING N N 7 A1BT7 "C4'" "O4'" SING N N 8 A1BT7 P "O5'" SING N N 9 A1BT7 P O2P SING N N 10 A1BT7 "C1'" "O4'" SING N N 11 A1BT7 "C1'" N1 SING N N 12 A1BT7 C6 N1 SING N N 13 A1BT7 C6 C5 SING N N 14 A1BT7 F C5 SING N N 15 A1BT7 CM5 C5 SING N N 16 A1BT7 N1 C2 SING N N 17 A1BT7 C5 C4 SING N N 18 A1BT7 C2 O2 DOUB N N 19 A1BT7 C2 N3 SING N N 20 A1BT7 C4 N4 SING N N 21 A1BT7 C4 N3 DOUB N N 22 A1BT7 P O1 SING N N 23 A1BT7 O2P H1 SING N N 24 A1BT7 "C5'" H2 SING N N 25 A1BT7 "C5'" H3 SING N N 26 A1BT7 "C4'" H4 SING N N 27 A1BT7 "C3'" H5 SING N N 28 A1BT7 "O3'" H6 SING N N 29 A1BT7 "C2'" H7 SING N N 30 A1BT7 "C2'" H8 SING N N 31 A1BT7 "C1'" H9 SING N N 32 A1BT7 N4 H10 SING N N 33 A1BT7 N4 H11 SING N N 34 A1BT7 C6 H12 SING N N 35 A1BT7 C6 H13 SING N N 36 A1BT7 CM5 H14 SING N N 37 A1BT7 CM5 H15 SING N N 38 A1BT7 CM5 H16 SING N N 39 A1BT7 O1 H17 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BT7 SMILES ACDLabs 14.52 "O=P(O)(O)OCC1OC(CC1O)N1CC(C)(F)C(N)=NC1=O" A1BT7 InChI InChI 1.06 "InChI=1S/C10H17FN3O7P/c1-10(11)4-14(9(16)13-8(10)12)7-2-5(15)6(21-7)3-20-22(17,18)19/h5-7,15H,2-4H2,1H3,(H2,12,13,16)(H2,17,18,19)/t5-,6+,7+,10-/m0/s1" A1BT7 InChIKey InChI 1.06 TYRMCTVFDIPPHW-DHCFDGJBSA-N A1BT7 SMILES_CANONICAL CACTVS 3.385 "C[C@]1(F)CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N=C1N" A1BT7 SMILES CACTVS 3.385 "C[C]1(F)CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N=C1N" A1BT7 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@]1(CN(C(=O)N=C1N)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)F" A1BT7 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1(CN(C(=O)N=C1N)C2CC(C(O2)COP(=O)(O)O)O)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BT7 "SYSTEMATIC NAME" ACDLabs 14.52 ;2'-deoxy-5-fluoro-5-methyl-5,6-dihydrocytidine 5'-(dihydrogen phosphate) ; A1BT7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(2~{R},3~{S},5~{R})-5-[(5~{S})-6-azanyl-5-fluoranyl-5-methyl-2-oxidanylidene-4~{H}-pyrimidin-3-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BT7 "Create component" 2025-01-22 RCSB A1BT7 "Initial release" 2025-10-22 RCSB #