data_A1BTU # _chem_comp.id A1BTU _chem_comp.name "5-{2-[2-(2-oxo-4-sulfanylidene-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}naphthalene-2-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H17 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-20 _chem_comp.pdbx_modified_date 2025-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 415.464 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BTU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MXB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BTU C8 C1 C 0 1 Y N N N N N 48.264 -11.405 21.434 0.808 3.614 1.898 C8 A1BTU 1 A1BTU C9 C2 C 0 1 Y N N N N N 48.287 -11.197 20.063 0.108 4.804 1.827 C9 A1BTU 2 A1BTU C10 C3 C 0 1 Y N N N N N 47.197 -11.522 19.298 -0.970 4.925 0.971 C10 A1BTU 3 A1BTU C11 C4 C 0 1 Y N N N N N 46.064 -12.067 19.886 -1.354 3.857 0.181 C11 A1BTU 4 A1BTU C12 C5 C 0 1 Y N N N N N 46.024 -12.273 21.256 -0.656 2.661 0.247 C12 A1BTU 5 A1BTU C13 C6 C 0 1 N N N N N N 43.988 -13.500 21.157 -2.156 1.807 -1.389 C13 A1BTU 6 A1BTU N1 N1 N 0 1 N N N N N N 49.719 -11.448 30.402 5.342 -4.765 -0.012 N1 A1BTU 7 A1BTU C6 C7 C 0 1 Y N N N N N 46.968 -11.042 24.215 2.116 1.168 0.272 C6 A1BTU 8 A1BTU C3 C8 C 0 1 Y N N N N N 48.772 -12.386 27.168 3.101 -2.303 1.024 C3 A1BTU 9 A1BTU C5 C9 C 0 1 Y N N N N N 47.547 -11.166 25.488 2.785 -0.072 0.218 C5 A1BTU 10 A1BTU C4 C10 C 0 1 Y N N N N N 48.232 -12.327 25.918 2.444 -1.117 1.093 C4 A1BTU 11 A1BTU C2 C11 C 0 1 Y N N N N N 48.659 -11.273 28.051 4.127 -2.505 0.083 C2 A1BTU 12 A1BTU C15 C12 C 0 1 N N N N N N 44.482 -14.971 24.044 -1.873 -1.346 -0.691 C15 A1BTU 13 A1BTU C16 C13 C 0 1 N N N N N N 45.247 -15.863 24.729 -2.243 -2.320 0.168 C16 A1BTU 14 A1BTU C17 C14 C 0 1 N N N N N N 45.499 -17.149 24.183 -3.615 -2.492 0.465 C17 A1BTU 15 A1BTU C18 C15 C 0 1 N N N N N N 44.179 -16.542 22.272 -4.129 -0.712 -0.959 C18 A1BTU 16 A1BTU C19 C16 C 0 1 Y N N N N N 46.311 -9.927 23.820 2.476 2.171 -0.601 C19 A1BTU 17 A1BTU C22 C17 C 0 1 Y N N N N N 47.435 -10.063 26.374 3.817 -0.262 -0.735 C22 A1BTU 18 A1BTU C1 C18 C 0 1 N N N N N N 49.250 -11.371 29.362 4.804 -3.766 0.030 C1 A1BTU 19 A1BTU C14 C19 C 0 1 N N N N N N 43.128 -14.327 22.084 -2.427 0.524 -2.177 C14 A1BTU 20 A1BTU C20 C20 C 0 1 Y N N N N N 46.205 -8.841 24.703 3.491 1.974 -1.533 C20 A1BTU 21 A1BTU C21 C21 C 0 1 Y N N N N N 46.749 -8.904 25.945 4.155 0.789 -1.608 C21 A1BTU 22 A1BTU C23 C22 C 0 1 Y N N N N N 48.009 -10.147 27.662 4.486 -1.493 -0.793 C23 A1BTU 23 A1BTU C7 C23 C 0 1 Y N N N N N 47.141 -11.940 22.015 0.429 2.539 1.109 C7 A1BTU 24 A1BTU N2 N2 N 0 1 N N N N N N 43.951 -15.301 22.835 -2.828 -0.540 -1.254 N2 A1BTU 25 A1BTU N3 N3 N 0 1 N N N N N N 44.942 -17.427 22.962 -4.525 -1.682 -0.115 N3 A1BTU 26 A1BTU O1 O1 O 0 1 N N N N N N 47.098 -12.156 23.380 1.121 1.370 1.173 O1 A1BTU 27 A1BTU O2 O2 O 0 1 N N N N N N 44.970 -12.811 21.937 -1.032 1.610 -0.529 O2 A1BTU 28 A1BTU O3 O3 O 0 1 N N N N N N 43.712 -16.845 21.188 -4.960 0.020 -1.463 O3 A1BTU 29 A1BTU S1 S1 S 0 1 N N N N N N 46.426 -18.324 24.942 -4.117 -3.718 1.549 S1 A1BTU 30 A1BTU H1 H1 H 0 1 N N N N N N 49.121 -11.149 22.039 1.653 3.523 2.565 H1 A1BTU 31 A1BTU H2 H2 H 0 1 N N N N N N 49.166 -10.778 19.597 0.404 5.640 2.443 H2 A1BTU 32 A1BTU H3 H3 H 0 1 N N N N N N 47.220 -11.353 18.232 -1.515 5.857 0.919 H3 A1BTU 33 A1BTU H4 H4 H 0 1 N N N N N N 45.213 -12.331 19.276 -2.197 3.954 -0.487 H4 A1BTU 34 A1BTU H5 H5 H 0 1 N N N N N N 43.361 -12.771 20.622 -1.944 2.622 -2.082 H5 A1BTU 35 A1BTU H6 H6 H 0 1 N N N N N N 44.487 -14.157 20.430 -3.032 2.058 -0.791 H6 A1BTU 36 A1BTU H7 H7 H 0 1 N N N N N N 49.287 -13.279 27.490 2.832 -3.102 1.700 H7 A1BTU 37 A1BTU H8 H8 H 0 1 N N N N N N 48.328 -13.172 25.252 1.658 -0.977 1.821 H8 A1BTU 38 A1BTU H9 H9 H 0 1 N N N N N N 44.294 -13.993 24.463 -0.830 -1.199 -0.928 H9 A1BTU 39 A1BTU H10 H10 H 0 1 N N N N N N 45.663 -15.593 25.688 -1.501 -2.959 0.623 H10 A1BTU 40 A1BTU H11 H11 H 0 1 N N N N N N 45.872 -9.873 22.835 1.965 3.122 -0.561 H11 A1BTU 41 A1BTU H12 H12 H 0 1 N N N N N N 42.620 -13.660 22.796 -3.226 0.701 -2.897 H12 A1BTU 42 A1BTU H13 H13 H 0 1 N N N N N N 42.378 -14.870 21.491 -1.522 0.225 -2.706 H13 A1BTU 43 A1BTU H14 H14 H 0 1 N N N N N N 45.686 -7.947 24.391 3.757 2.776 -2.207 H14 A1BTU 44 A1BTU H15 H15 H 0 1 N N N N N N 46.657 -8.060 26.612 4.940 0.654 -2.338 H15 A1BTU 45 A1BTU H16 H16 H 0 1 N N N N N N 47.930 -9.311 28.341 5.274 -1.652 -1.513 H16 A1BTU 46 A1BTU H17 H17 H 0 1 N N N N N N 45.106 -18.327 22.559 -5.467 -1.792 0.087 H17 A1BTU 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BTU C10 C11 DOUB Y N 1 A1BTU C10 C9 SING Y N 2 A1BTU C11 C12 SING Y N 3 A1BTU C9 C8 DOUB Y N 4 A1BTU C13 O2 SING N N 5 A1BTU C13 C14 SING N N 6 A1BTU O3 C18 DOUB N N 7 A1BTU C12 O2 SING N N 8 A1BTU C12 C7 DOUB Y N 9 A1BTU C8 C7 SING Y N 10 A1BTU C7 O1 SING N N 11 A1BTU C14 N2 SING N N 12 A1BTU C18 N2 SING N N 13 A1BTU C18 N3 SING N N 14 A1BTU N2 C15 SING N N 15 A1BTU N3 C17 SING N N 16 A1BTU O1 C6 SING N N 17 A1BTU C19 C6 DOUB Y N 18 A1BTU C19 C20 SING Y N 19 A1BTU C15 C16 DOUB N N 20 A1BTU C17 C16 SING N N 21 A1BTU C17 S1 DOUB N N 22 A1BTU C6 C5 SING Y N 23 A1BTU C20 C21 DOUB Y N 24 A1BTU C5 C4 DOUB Y N 25 A1BTU C5 C22 SING Y N 26 A1BTU C4 C3 SING Y N 27 A1BTU C21 C22 SING Y N 28 A1BTU C22 C23 DOUB Y N 29 A1BTU C3 C2 DOUB Y N 30 A1BTU C23 C2 SING Y N 31 A1BTU C2 C1 SING N N 32 A1BTU C1 N1 TRIP N N 33 A1BTU C8 H1 SING N N 34 A1BTU C9 H2 SING N N 35 A1BTU C10 H3 SING N N 36 A1BTU C11 H4 SING N N 37 A1BTU C13 H5 SING N N 38 A1BTU C13 H6 SING N N 39 A1BTU C3 H7 SING N N 40 A1BTU C4 H8 SING N N 41 A1BTU C15 H9 SING N N 42 A1BTU C16 H10 SING N N 43 A1BTU C19 H11 SING N N 44 A1BTU C14 H12 SING N N 45 A1BTU C14 H13 SING N N 46 A1BTU C20 H14 SING N N 47 A1BTU C21 H15 SING N N 48 A1BTU C23 H16 SING N N 49 A1BTU N3 H17 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BTU SMILES ACDLabs 14.52 "N#Cc1ccc2c(c1)cccc2Oc1ccccc1OCCN1C=CC(=S)NC1=O" A1BTU InChI InChI 1.06 "InChI=1S/C23H17N3O3S/c24-15-16-8-9-18-17(14-16)4-3-7-19(18)29-21-6-2-1-5-20(21)28-13-12-26-11-10-22(30)25-23(26)27/h1-11,14H,12-13H2,(H,25,27,30)" A1BTU InChIKey InChI 1.06 MADLNJACUUKLRV-UHFFFAOYSA-N A1BTU SMILES_CANONICAL CACTVS 3.385 "O=C1NC(=S)C=CN1CCOc2ccccc2Oc3cccc4cc(ccc34)C#N" A1BTU SMILES CACTVS 3.385 "O=C1NC(=S)C=CN1CCOc2ccccc2Oc3cccc4cc(ccc34)C#N" A1BTU SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(c(c1)OCCN2C=CC(=S)NC2=O)Oc3cccc4c3ccc(c4)C#N" A1BTU SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(c(c1)OCCN2C=CC(=S)NC2=O)Oc3cccc4c3ccc(c4)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BTU "SYSTEMATIC NAME" ACDLabs 14.52 "5-{2-[2-(2-oxo-4-sulfanylidene-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}naphthalene-2-carbonitrile" A1BTU "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-[2-[2-(2-oxidanylidene-4-sulfanylidene-pyrimidin-1-yl)ethoxy]phenoxy]naphthalene-2-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BTU "Create component" 2025-01-20 RCSB A1BTU "Initial release" 2025-09-10 RCSB #