data_A1BVO # _chem_comp.id A1BVO _chem_comp.name "(1r,4r)-4-[(2,5-dioxopyrrolidin-1-yl)methyl]cyclohexane-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-30 _chem_comp.pdbx_modified_date 2026-01-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 238.283 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BVO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9N2U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BVO N1 N1 N 0 1 N N N N N N 35.248 -31.285 0.194 -2.382 0.187 0.307 N1 A1BVO 1 A1BVO C4 C1 C 0 1 N N N N N N 34.588 -30.087 0.421 -2.712 -1.107 0.393 C4 A1BVO 2 A1BVO C5 C2 C 0 1 N N N N N N 36.280 -31.517 -0.833 -1.332 0.794 1.128 C5 A1BVO 3 A1BVO C6 C3 C 0 1 N N N N N N 35.760 -31.862 -2.229 0.009 0.689 0.400 C6 A1BVO 4 A1BVO C7 C4 C 0 1 N N N N N N 36.846 -31.848 -3.299 1.083 1.431 1.199 C7 A1BVO 5 A1BVO C8 C5 C 0 1 N N N N N N 36.283 -32.110 -4.697 2.424 1.327 0.471 C8 A1BVO 6 A1BVO C10 C6 C 0 1 N N N N N N 34.468 -33.491 -3.648 1.743 -0.888 -0.465 C10 A1BVO 7 A1BVO C1 C7 C 0 1 N N N N N N 34.882 -32.234 1.126 -3.088 0.881 -0.595 C1 A1BVO 8 A1BVO C2 C8 C 0 1 N N N N N N 33.684 -31.711 1.867 -4.079 -0.043 -1.269 C2 A1BVO 9 A1BVO C3 C9 C 0 1 N N N N N N 33.752 -30.220 1.657 -3.822 -1.405 -0.592 C3 A1BVO 10 A1BVO O1 O1 O 0 1 N N N N N N 35.488 -33.291 1.314 -2.953 2.062 -0.835 O1 A1BVO 11 A1BVO O2 O2 O 0 1 N N N N N N 34.685 -29.079 -0.240 -2.202 -1.914 1.140 O2 A1BVO 12 A1BVO C9 C10 C 0 1 N N N N N N 35.515 -33.442 -4.772 2.817 -0.146 0.334 C9 A1BVO 13 A1BVO C11 C11 C 0 1 N N N N N N 35.095 -33.223 -2.278 0.402 -0.783 0.264 C11 A1BVO 14 A1BVO C12 C12 C 0 1 N N N N N N 34.878 -33.632 -6.155 4.138 -0.249 -0.383 C12 A1BVO 15 A1BVO O3 O3 O 0 1 N N N N N N 35.288 -33.016 -7.141 4.709 0.756 -0.749 O3 A1BVO 16 A1BVO N2 N2 N 0 1 N N N N N N 33.874 -34.496 -6.266 4.685 -1.458 -0.618 N2 A1BVO 17 A1BVO H6 H1 H 0 1 N N N N N N 36.914 -32.349 -0.493 -1.569 1.843 1.305 H6 A1BVO 18 A1BVO H5 H2 H 0 1 N N N N N N 36.887 -30.603 -0.915 -1.269 0.270 2.082 H5 A1BVO 19 A1BVO H7 H3 H 0 1 N N N N N N 35.008 -31.108 -2.503 -0.079 1.135 -0.590 H7 A1BVO 20 A1BVO H9 H4 H 0 1 N N N N N N 37.586 -32.627 -3.063 0.803 2.480 1.297 H9 A1BVO 21 A1BVO H8 H5 H 0 1 N N N N N N 37.336 -30.863 -3.293 1.171 0.985 2.190 H8 A1BVO 22 A1BVO H11 H6 H 0 1 N N N N N N 37.116 -32.140 -5.415 2.336 1.772 -0.520 H11 A1BVO 23 A1BVO H10 H7 H 0 1 N N N N N N 35.599 -31.291 -4.963 3.189 1.855 1.040 H10 A1BVO 24 A1BVO H13 H8 H 0 1 N N N N N N 33.699 -32.729 -3.843 1.655 -0.442 -1.456 H13 A1BVO 25 A1BVO H14 H9 H 0 1 N N N N N N 34.002 -34.487 -3.638 2.023 -1.937 -0.562 H14 A1BVO 26 A1BVO H1 H10 H 0 1 N N N N N N 32.754 -32.123 1.449 -5.100 0.291 -1.084 H1 A1BVO 27 A1BVO H2 H11 H 0 1 N N N N N N 33.746 -31.959 2.937 -3.883 -0.101 -2.340 H2 A1BVO 28 A1BVO H3 H12 H 0 1 N N N N N N 34.231 -29.722 2.513 -3.497 -2.142 -1.326 H3 A1BVO 29 A1BVO H4 H13 H 0 1 N N N N N N 32.748 -29.797 1.502 -4.715 -1.748 -0.071 H4 A1BVO 30 A1BVO H12 H14 H 0 1 N N N N N N 36.232 -34.260 -4.609 2.905 -0.592 1.325 H12 A1BVO 31 A1BVO H15 H15 H 0 1 N N N N N N 34.308 -33.264 -1.510 0.491 -1.229 1.254 H15 A1BVO 32 A1BVO H16 H16 H 0 1 N N N N N N 35.849 -33.997 -2.072 -0.363 -1.312 -0.306 H16 A1BVO 33 A1BVO H17 H17 H 0 1 N N N N N N 33.444 -34.651 -7.155 4.228 -2.262 -0.326 H17 A1BVO 34 A1BVO H18 H18 H 0 1 N N N N N N 33.549 -34.991 -5.460 5.535 -1.525 -1.080 H18 A1BVO 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BVO O3 C12 DOUB N N 1 A1BVO N2 C12 SING N N 2 A1BVO C12 C9 SING N N 3 A1BVO C9 C8 SING N N 4 A1BVO C9 C10 SING N N 5 A1BVO C8 C7 SING N N 6 A1BVO C10 C11 SING N N 7 A1BVO C7 C6 SING N N 8 A1BVO C11 C6 SING N N 9 A1BVO C6 C5 SING N N 10 A1BVO C5 N1 SING N N 11 A1BVO O2 C4 DOUB N N 12 A1BVO N1 C4 SING N N 13 A1BVO N1 C1 SING N N 14 A1BVO C4 C3 SING N N 15 A1BVO C1 O1 DOUB N N 16 A1BVO C1 C2 SING N N 17 A1BVO C3 C2 SING N N 18 A1BVO C5 H6 SING N N 19 A1BVO C5 H5 SING N N 20 A1BVO C6 H7 SING N N 21 A1BVO C7 H9 SING N N 22 A1BVO C7 H8 SING N N 23 A1BVO C8 H11 SING N N 24 A1BVO C8 H10 SING N N 25 A1BVO C10 H13 SING N N 26 A1BVO C10 H14 SING N N 27 A1BVO C2 H1 SING N N 28 A1BVO C2 H2 SING N N 29 A1BVO C3 H3 SING N N 30 A1BVO C3 H4 SING N N 31 A1BVO C9 H12 SING N N 32 A1BVO C11 H15 SING N N 33 A1BVO C11 H16 SING N N 34 A1BVO N2 H17 SING N N 35 A1BVO N2 H18 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BVO SMILES ACDLabs 14.52 "NC(=O)C1CCC(CN2C(=O)CCC2=O)CC1" A1BVO InChI InChI 1.06 "InChI=1S/C12H18N2O3/c13-12(17)9-3-1-8(2-4-9)7-14-10(15)5-6-11(14)16/h8-9H,1-7H2,(H2,13,17)/t8-,9-" A1BVO InChIKey InChI 1.06 NILRGZBNWXQVHW-KYZUINATSA-N A1BVO SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@H]1CC[C@@H](CC1)CN2C(=O)CCC2=O" A1BVO SMILES CACTVS 3.385 "NC(=O)[CH]1CC[CH](CC1)CN2C(=O)CCC2=O" A1BVO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1CC(CCC1CN2C(=O)CCC2=O)C(=O)N" A1BVO SMILES "OpenEye OEToolkits" 3.1.0.0 "C1CC(CCC1CN2C(=O)CCC2=O)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BVO "SYSTEMATIC NAME" ACDLabs 14.52 "(1r,4r)-4-[(2,5-dioxopyrrolidin-1-yl)methyl]cyclohexane-1-carboxamide" A1BVO "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[[2,5-bis(oxidanylidene)pyrrolidin-1-yl]methyl]cyclohexane-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BVO "Create component" 2025-01-30 RCSB A1BVO "Modify PCM" 2025-01-31 RCSB A1BVO "Initial release" 2026-02-04 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BVO _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C3 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #