data_A1BVT # _chem_comp.id A1BVT _chem_comp.name "(3M,5P,6M)-5-(1H-1,2,3-benzotriazol-1-yl)-6-(3-chlorophenyl)-3-(isoquinolin-4-yl)-1-(prop-2-en-1-yl)pyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H19 Cl N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3M,5P,6M)-5-(1H-1,2,3-benzotriazol-1-yl)-6-(3-chlorophenyl)-3-(isoquinolin-4-yl)-1-(prop-2-yn-1-yl)pyrimidine-2,4(1H,3H)-dione bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-03 _chem_comp.pdbx_modified_date 2025-07-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.942 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BVT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MVO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BVT C10 C1 C 0 1 Y N N N N N -14.167 -30.914 -3.940 -4.356 1.136 0.549 C10 A1BVT 1 A1BVT C13 C2 C 0 1 N N N N N N -13.889 -28.023 -0.489 -0.385 -0.221 -0.823 C13 A1BVT 2 A1BVT C17 C3 C 0 1 Y N N N N N -16.930 -26.655 -1.644 -2.590 -3.058 -0.762 C17 A1BVT 3 A1BVT C20 C4 C 0 1 Y N N N N N -18.270 -27.915 0.507 -1.308 -4.007 1.507 C20 A1BVT 4 A1BVT C21 C5 C 0 1 Y N N N N N -16.887 -28.072 0.350 -0.881 -2.829 0.938 C21 A1BVT 5 A1BVT C22 C6 C 0 1 Y N N N N N -16.225 -27.433 -0.745 -1.517 -2.344 -0.200 C22 A1BVT 6 A1BVT C26 C7 C 0 1 Y N N N N N -11.657 -26.879 2.187 3.265 0.181 -0.808 C26 A1BVT 7 A1BVT C01 C8 C 0 1 N N N N N N -11.254 -33.049 1.539 0.193 4.540 2.007 C01 A1BVT 8 A1BVT C02 C9 C 0 1 N N N N N N -11.880 -31.902 1.323 -0.443 3.607 1.345 C02 A1BVT 9 A1BVT C03 C10 C 0 1 N N N N N N -11.642 -31.032 0.016 -0.201 3.432 -0.132 C03 A1BVT 10 A1BVT C05 C11 C 0 1 N N N N N N -13.342 -29.326 -0.698 -0.772 1.078 -0.570 C05 A1BVT 11 A1BVT C06 C12 C 0 1 Y N N N N N -13.866 -30.229 -1.650 -2.203 1.427 -0.479 C06 A1BVT 12 A1BVT C07 C13 C 0 1 Y N N N N N -14.603 -31.367 -1.272 -2.749 2.381 -1.341 C07 A1BVT 13 A1BVT C08 C14 C 0 1 Y N N N N N -15.110 -32.272 -2.208 -4.087 2.702 -1.252 C08 A1BVT 14 A1BVT C09 C15 C 0 1 Y N N N N N -14.899 -32.043 -3.561 -4.890 2.082 -0.310 C09 A1BVT 15 A1BVT C12 C16 C 0 1 Y N N N N N -13.650 -30.016 -3.009 -3.018 0.805 0.470 C12 A1BVT 16 A1BVT C18 C17 C 0 1 Y N N N N N -18.339 -26.471 -1.469 -3.005 -4.255 -0.162 C18 A1BVT 17 A1BVT C19 C18 C 0 1 Y N N N N N -18.989 -27.130 -0.411 -2.368 -4.713 0.953 C19 A1BVT 18 A1BVT C23 C19 C 0 1 N N N N N N -13.299 -27.190 0.513 0.998 -0.517 -0.902 C23 A1BVT 19 A1BVT C27 C20 C 0 1 Y N N N N N -12.156 -26.919 3.499 3.935 0.255 -2.011 C27 A1BVT 20 A1BVT C29 C21 C 0 1 Y N N N N N -10.520 -25.391 4.219 5.959 -0.360 -1.068 C29 A1BVT 21 A1BVT C30 C22 C 0 1 Y N N N N N -9.947 -25.310 2.896 5.376 -0.466 0.205 C30 A1BVT 22 A1BVT C31 C23 C 0 1 Y N N N N N -8.812 -24.464 2.622 6.122 -0.835 1.336 C31 A1BVT 23 A1BVT C32 C24 C 0 1 Y N N N N N -8.272 -24.440 1.257 5.505 -0.922 2.547 C32 A1BVT 24 A1BVT C33 C25 C 0 1 Y N N N N N -8.854 -25.166 0.288 4.145 -0.649 2.682 C33 A1BVT 25 A1BVT C34 C26 C 0 1 Y N N N N N -9.964 -25.992 0.548 3.391 -0.290 1.606 C34 A1BVT 26 A1BVT C35 C27 C 0 1 Y N N N N N -10.510 -26.055 1.876 3.992 -0.189 0.345 C35 A1BVT 27 A1BVT C36 C28 C 0 1 N N N N N N -11.739 -28.867 0.999 1.500 1.730 -0.485 C36 A1BVT 28 A1BVT N04 N1 N 0 1 N N N N N N -12.336 -29.589 0.154 0.196 2.048 -0.402 N04 A1BVT 29 A1BVT N14 N2 N 0 1 Y N N N N N -14.920 -27.446 -1.144 -1.342 -1.232 -0.993 N14 A1BVT 30 A1BVT N15 N3 N 0 1 Y N N N N N -14.802 -26.650 -2.266 -2.312 -1.310 -2.004 N15 A1BVT 31 A1BVT N16 N4 N 0 1 Y N N N N N -16.061 -26.180 -2.585 -3.012 -2.377 -1.845 N16 A1BVT 32 A1BVT N25 N5 N 0 1 N N N N N N -12.260 -27.546 1.310 1.899 0.470 -0.730 N25 A1BVT 33 A1BVT N28 N6 N 0 1 Y N N N N N -11.507 -26.095 4.538 5.230 -0.011 -2.102 N28 A1BVT 34 A1BVT O24 O1 O 0 1 N N N N N N -13.672 -25.910 0.840 1.371 -1.656 -1.124 O24 A1BVT 35 A1BVT O37 O2 O 0 1 N N N N N N -10.821 -29.243 1.650 2.336 2.601 -0.333 O37 A1BVT 36 A1BVT CL11 CL1 CL 0 0 N N N N N N -13.890 -30.614 -5.669 -5.370 0.370 1.731 CL11 A1BVT 37 A1BVT H1 H1 H 0 1 N N N N N N -18.781 -28.394 1.329 -0.815 -4.385 2.391 H1 A1BVT 38 A1BVT H2 H2 H 0 1 N N N N N N -16.325 -28.671 1.051 -0.057 -2.283 1.373 H2 A1BVT 39 A1BVT H3 H3 H 0 1 N N N N N N -10.550 -33.426 0.811 0.019 4.666 3.066 H3 A1BVT 40 A1BVT H4 H4 H 0 1 N N N N N N -11.447 -33.608 2.443 0.892 5.185 1.495 H4 A1BVT 41 A1BVT H5 H5 H 0 1 N N N N N N -12.579 -31.545 2.064 -1.142 2.962 1.857 H5 A1BVT 42 A1BVT H6 H6 H 0 1 N N N N N N -12.072 -31.557 -0.850 -1.115 3.662 -0.680 H6 A1BVT 43 A1BVT H7 H7 H 0 1 N N N N N N -10.561 -30.899 -0.136 0.594 4.106 -0.452 H7 A1BVT 44 A1BVT H8 H8 H 0 1 N N N N N N -14.783 -31.547 -0.222 -2.124 2.866 -2.077 H8 A1BVT 45 A1BVT H9 H9 H 0 1 N N N N N N -15.661 -33.142 -1.882 -4.510 3.440 -1.918 H9 A1BVT 46 A1BVT H10 H10 H 0 1 N N N N N N -15.291 -32.722 -4.304 -5.937 2.338 -0.244 H10 A1BVT 47 A1BVT H11 H11 H 0 1 N N N N N N -13.084 -29.158 -3.340 -2.602 0.067 1.140 H11 A1BVT 48 A1BVT H12 H12 H 0 1 N N N N N N -18.895 -25.834 -2.141 -3.828 -4.813 -0.583 H12 A1BVT 49 A1BVT H13 H13 H 0 1 N N N N N N -20.059 -27.031 -0.302 -2.692 -5.636 1.411 H13 A1BVT 50 A1BVT H14 H14 H 0 1 N N N N N N -13.002 -27.543 3.744 3.391 0.537 -2.900 H14 A1BVT 51 A1BVT H15 H15 H 0 1 N N N N N N -10.061 -24.797 4.996 7.012 -0.566 -1.197 H15 A1BVT 52 A1BVT H16 H16 H 0 1 N N N N N N -8.370 -23.862 3.402 7.176 -1.049 1.246 H16 A1BVT 53 A1BVT H17 H17 H 0 1 N N N N N N -7.405 -23.837 1.031 6.079 -1.206 3.416 H17 A1BVT 54 A1BVT H18 H18 H 0 1 N N N N N N -8.460 -25.115 -0.716 3.681 -0.727 3.655 H18 A1BVT 55 A1BVT H19 H19 H 0 1 N N N N N N -10.403 -26.576 -0.247 2.338 -0.082 1.725 H19 A1BVT 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BVT CL11 C10 SING N N 1 A1BVT C10 C09 DOUB Y N 2 A1BVT C10 C12 SING Y N 3 A1BVT C09 C08 SING Y N 4 A1BVT C12 C06 DOUB Y N 5 A1BVT N16 N15 DOUB Y N 6 A1BVT N16 C17 SING Y N 7 A1BVT N15 N14 SING Y N 8 A1BVT C08 C07 DOUB Y N 9 A1BVT C06 C07 SING Y N 10 A1BVT C06 C05 SING N N 11 A1BVT C17 C18 DOUB Y N 12 A1BVT C17 C22 SING Y N 13 A1BVT C18 C19 SING Y N 14 A1BVT N14 C22 SING Y N 15 A1BVT N14 C13 SING N N 16 A1BVT C22 C21 DOUB Y N 17 A1BVT C05 C13 DOUB N N 18 A1BVT C05 N04 SING N N 19 A1BVT C13 C23 SING N N 20 A1BVT C19 C20 DOUB Y N 21 A1BVT C03 N04 SING N N 22 A1BVT C03 C02 SING N N 23 A1BVT N04 C36 SING N N 24 A1BVT C33 C34 DOUB Y N 25 A1BVT C33 C32 SING Y N 26 A1BVT C21 C20 SING Y N 27 A1BVT C23 O24 DOUB N N 28 A1BVT C23 N25 SING N N 29 A1BVT C34 C35 SING Y N 30 A1BVT C36 N25 SING N N 31 A1BVT C36 O37 DOUB N N 32 A1BVT C32 C31 DOUB Y N 33 A1BVT N25 C26 SING N N 34 A1BVT C02 C01 DOUB N N 35 A1BVT C35 C26 DOUB Y N 36 A1BVT C35 C30 SING Y N 37 A1BVT C26 C27 SING Y N 38 A1BVT C31 C30 SING Y N 39 A1BVT C30 C29 DOUB Y N 40 A1BVT C27 N28 DOUB Y N 41 A1BVT C29 N28 SING Y N 42 A1BVT C20 H1 SING N N 43 A1BVT C21 H2 SING N N 44 A1BVT C01 H3 SING N N 45 A1BVT C01 H4 SING N N 46 A1BVT C02 H5 SING N N 47 A1BVT C03 H6 SING N N 48 A1BVT C03 H7 SING N N 49 A1BVT C07 H8 SING N N 50 A1BVT C08 H9 SING N N 51 A1BVT C09 H10 SING N N 52 A1BVT C12 H11 SING N N 53 A1BVT C18 H12 SING N N 54 A1BVT C19 H13 SING N N 55 A1BVT C27 H14 SING N N 56 A1BVT C29 H15 SING N N 57 A1BVT C31 H16 SING N N 58 A1BVT C32 H17 SING N N 59 A1BVT C33 H18 SING N N 60 A1BVT C34 H19 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BVT SMILES ACDLabs 14.52 "Clc1cccc(c1)C=1N(CC=C)C(=O)N(c2cncc3ccccc32)C(=O)C=1n1nnc2ccccc21" A1BVT InChI InChI 1.06 "InChI=1S/C28H19ClN6O2/c1-2-14-33-25(18-9-7-10-20(29)15-18)26(35-23-13-6-5-12-22(23)31-32-35)27(36)34(28(33)37)24-17-30-16-19-8-3-4-11-21(19)24/h2-13,15-17H,1,14H2" A1BVT InChIKey InChI 1.06 GHMBRMVREZRIQH-UHFFFAOYSA-N A1BVT SMILES_CANONICAL CACTVS 3.385 "Clc1cccc(c1)C2=C(n3nnc4ccccc34)C(=O)N(C(=O)N2CC=C)c5cncc6ccccc56" A1BVT SMILES CACTVS 3.385 "Clc1cccc(c1)C2=C(n3nnc4ccccc34)C(=O)N(C(=O)N2CC=C)c5cncc6ccccc56" A1BVT SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C=CCN1C(=C(C(=O)N(C1=O)c2cncc3c2cccc3)n4c5ccccc5nn4)c6cccc(c6)Cl" A1BVT SMILES "OpenEye OEToolkits" 3.1.0.0 "C=CCN1C(=C(C(=O)N(C1=O)c2cncc3c2cccc3)n4c5ccccc5nn4)c6cccc(c6)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BVT "SYSTEMATIC NAME" ACDLabs 14.52 "(3M,5P,6M)-5-(1H-1,2,3-benzotriazol-1-yl)-6-(3-chlorophenyl)-3-(isoquinolin-4-yl)-1-(prop-2-en-1-yl)pyrimidine-2,4(1H,3H)-dione" A1BVT "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-(benzotriazol-1-yl)-6-(3-chlorophenyl)-3-isoquinolin-4-yl-1-prop-2-enyl-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BVT "Create component" 2025-02-03 RCSB A1BVT "Modify PCM" 2025-07-15 RCSB A1BVT "Initial release" 2025-07-23 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1BVT _pdbx_chem_comp_synonyms.name "(3M,5P,6M)-5-(1H-1,2,3-benzotriazol-1-yl)-6-(3-chlorophenyl)-3-(isoquinolin-4-yl)-1-(prop-2-yn-1-yl)pyrimidine-2,4(1H,3H)-dione bound form" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BVT _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #