data_A1BX4 # _chem_comp.id A1BX4 _chem_comp.name N~6~-hydroxy-L-lysine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N2 O3" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-25 _chem_comp.pdbx_modified_date 2025-08-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 162.187 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BX4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9NH9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BX4 CG C1 C 0 1 N N N N N N 62.434 -12.012 -1.674 -0.548 -0.262 -0.375 CG A1BX4 1 A1BX4 CD C2 C 0 1 N N N N N N 63.289 -11.717 -0.457 -1.746 0.385 0.322 CD A1BX4 2 A1BX4 CE C3 C 0 1 N N N N N N 63.657 -10.244 -0.332 -3.042 -0.172 -0.271 CE A1BX4 3 A1BX4 CB C4 C 0 1 N N N N N N 62.632 -13.468 -2.074 0.748 0.294 0.218 CB A1BX4 4 A1BX4 CA C5 C 0 1 N N S N Y N 62.106 -13.849 -3.459 1.947 -0.353 -0.478 CA A1BX4 5 A1BX4 C C6 C 0 1 N N N N Y Y 61.517 -15.257 -3.323 3.220 0.284 0.018 C A1BX4 6 A1BX4 NZ N1 N 0 1 N N N N N N 65.079 -10.156 -0.070 -4.193 0.449 0.398 NZ A1BX4 7 A1BX4 N N2 N 0 1 N N N Y Y N 61.095 -12.919 -3.934 1.970 -1.791 -0.179 N A1BX4 8 A1BX4 O05 O1 O 0 1 N N N N N N 65.313 -9.136 0.875 -5.453 -0.061 -0.145 O05 A1BX4 9 A1BX4 O O2 O 0 1 N N N N Y Y 60.261 -15.447 -3.394 3.885 -0.272 0.860 O A1BX4 10 A1BX4 OXT O3 O 0 1 N Y N N Y Y 62.305 -16.222 -3.113 3.615 1.468 -0.476 OXT A1BX4 11 A1BX4 HG3 H1 H 0 1 N N N N N N 61.375 -11.836 -1.433 -0.580 -1.342 -0.226 HG3 A1BX4 12 A1BX4 HG2 H2 H 0 1 N N N N N N 62.735 -11.357 -2.505 -0.584 -0.041 -1.441 HG2 A1BX4 13 A1BX4 HD2 H3 H 0 1 N N N N N N 64.216 -12.305 -0.529 -1.710 0.163 1.388 HD2 A1BX4 14 A1BX4 HD3 H4 H 0 1 N N N N N N 62.733 -12.017 0.443 -1.713 1.464 0.174 HD3 A1BX4 15 A1BX4 HE2 H5 H 0 1 N N N N N N 63.417 -9.719 -1.268 -3.079 0.049 -1.337 HE2 A1BX4 16 A1BX4 HE3 H6 H 0 1 N N N N N N 63.096 -9.789 0.498 -3.075 -1.252 -0.123 HE3 A1BX4 17 A1BX4 HB2 H7 H 0 1 N N N N N N 63.711 -13.682 -2.051 0.781 1.374 0.070 HB2 A1BX4 18 A1BX4 HB3 H8 H 0 1 N N N N N N 62.118 -14.096 -1.332 0.785 0.073 1.285 HB3 A1BX4 19 A1BX4 HA H9 H 0 1 N N N N Y N 62.949 -13.881 -4.165 1.864 -0.207 -1.555 HA A1BX4 20 A1BX4 HZ1 H10 H 0 1 N N N N N N 65.407 -11.029 0.291 -4.148 0.313 1.397 HZ1 A1BX4 21 A1BX4 H H11 H 0 1 N N N Y Y N 60.779 -13.203 -4.839 2.714 -2.252 -0.679 H A1BX4 22 A1BX4 H2 H12 H 0 1 N Y N Y Y N 60.323 -12.913 -3.298 2.046 -1.952 0.814 H2 A1BX4 23 A1BX4 H051 H14 H 0 0 N N N N N N 66.245 -9.074 1.051 -6.241 0.320 0.266 H051 A1BX4 24 A1BX4 HXT H15 H 0 1 N Y N N Y Y 61.806 -17.026 -3.030 4.438 1.836 -0.127 HXT A1BX4 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BX4 CE CD SING N N 1 A1BX4 NZ CE SING N N 2 A1BX4 O05 NZ SING N N 3 A1BX4 CD CG SING N N 4 A1BX4 CB CG SING N N 5 A1BX4 CA CB SING N N 6 A1BX4 N CA SING N N 7 A1BX4 C CA SING N N 8 A1BX4 O C DOUB N N 9 A1BX4 OXT C SING N N 10 A1BX4 CG HG3 SING N N 11 A1BX4 CG HG2 SING N N 12 A1BX4 CD HD2 SING N N 13 A1BX4 CD HD3 SING N N 14 A1BX4 CE HE2 SING N N 15 A1BX4 CE HE3 SING N N 16 A1BX4 CB HB2 SING N N 17 A1BX4 CB HB3 SING N N 18 A1BX4 CA HA SING N N 19 A1BX4 NZ HZ1 SING N N 20 A1BX4 N H SING N N 21 A1BX4 N H2 SING N N 22 A1BX4 O05 H051 SING N N 23 A1BX4 OXT HXT SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BX4 SMILES ACDLabs 14.52 "NC(CCCCNO)C(=O)O" A1BX4 InChI InChI 1.06 "InChI=1S/C6H14N2O3/c7-5(6(9)10)3-1-2-4-8-11/h5,8,11H,1-4,7H2,(H,9,10)/t5-/m0/s1" A1BX4 InChIKey InChI 1.06 FZQOIMPLZAYIKU-YFKPBYRVSA-N A1BX4 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCNO)C(O)=O" A1BX4 SMILES CACTVS 3.385 "N[CH](CCCCNO)C(O)=O" A1BX4 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C(CCNO)C[C@@H](C(=O)O)N" A1BX4 SMILES "OpenEye OEToolkits" 3.1.0.0 "C(CCNO)CC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BX4 "SYSTEMATIC NAME" ACDLabs 14.52 N~6~-hydroxy-L-lysine A1BX4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-2-azanyl-6-(oxidanylamino)hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BX4 "Create component" 2025-02-25 RCSB A1BX4 "Other modification" 2025-07-17 RCSB A1BX4 "Initial release" 2025-08-20 RCSB #