data_A1BYJ # _chem_comp.id A1BYJ _chem_comp.name 1,3-dihydro-2H-isoindole-2-carbaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H9 N O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "isoindoline-2-carbonyl fluoride, reacted form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-27 _chem_comp.pdbx_modified_date 2026-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.174 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BYJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9NIZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BYJ C1 C1 C 0 1 N N N N N N 14.794 4.582 15.204 2.988 0.396 0.000 C1 A1BYJ 1 A1BYJ N1 N1 N 0 1 N N N N N N 16.134 4.145 15.072 1.646 0.267 0.000 N1 A1BYJ 2 A1BYJ C2 C2 C 0 1 N N N N N N 16.806 3.824 14.035 0.890 -0.989 0.002 C2 A1BYJ 3 A1BYJ C3 C3 C 0 1 Y N N N N N 17.977 3.130 14.131 -0.577 -0.641 0.001 C3 A1BYJ 4 A1BYJ C4 C4 C 0 1 Y N N N N N 18.888 2.404 13.177 -1.705 -1.443 0.001 C4 A1BYJ 5 A1BYJ C5 C5 C 0 1 Y N N N N N 19.981 1.813 13.648 -2.963 -0.871 0.000 C5 A1BYJ 6 A1BYJ C6 C6 C 0 1 Y N N N N N 20.330 1.856 15.161 -3.095 0.505 -0.002 C6 A1BYJ 7 A1BYJ C7 C7 C 0 1 Y N N N N N 19.541 2.487 16.013 -1.969 1.306 -0.002 C7 A1BYJ 8 A1BYJ C8 C8 C 0 1 Y N N N N N 18.305 3.153 15.469 -0.710 0.734 -0.001 C8 A1BYJ 9 A1BYJ C9 C9 C 0 1 N N N N N N 17.052 4.031 16.200 0.664 1.355 0.005 C9 A1BYJ 10 A1BYJ O1 O1 O 0 1 N N N N N N 14.358 4.821 16.276 3.692 -0.592 -0.003 O1 A1BYJ 11 A1BYJ H1 H1 H 0 1 N N N N N N 14.172 4.697 14.328 3.436 1.378 -0.001 H1 A1BYJ 12 A1BYJ H3 H2 H 0 1 N N N N N N 16.137 3.218 13.407 1.133 -1.568 -0.890 H3 A1BYJ 13 A1BYJ H2 H3 H 0 1 N N N N N N 17.044 4.764 13.516 1.132 -1.566 0.894 H2 A1BYJ 14 A1BYJ H4 H4 H 0 1 N N N N N N 18.656 2.364 12.123 -1.602 -2.518 0.002 H4 A1BYJ 15 A1BYJ H5 H5 H 0 1 N N N N N N 20.638 1.293 12.967 -3.842 -1.498 0.000 H5 A1BYJ 16 A1BYJ H6 H6 H 0 1 N N N N N N 21.224 1.367 15.519 -4.078 0.953 -0.003 H6 A1BYJ 17 A1BYJ H7 H7 H 0 1 N N N N N N 19.775 2.524 17.067 -2.073 2.382 -0.004 H7 A1BYJ 18 A1BYJ H8 H8 H 0 1 N N N N N N 17.394 5.016 16.550 0.793 1.965 0.899 H8 A1BYJ 19 A1BYJ H9 H9 H 0 1 N N N N N N 16.602 3.480 17.039 0.792 1.972 -0.885 H9 A1BYJ 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BYJ O1 C1 DOUB N N 1 A1BYJ C1 N1 SING N N 2 A1BYJ N1 C2 SING N N 3 A1BYJ N1 C9 SING N N 4 A1BYJ C2 C3 SING N N 5 A1BYJ C3 C4 DOUB Y N 6 A1BYJ C3 C8 SING Y N 7 A1BYJ C4 C5 SING Y N 8 A1BYJ C5 C6 DOUB Y N 9 A1BYJ C6 C7 SING Y N 10 A1BYJ C7 C8 DOUB Y N 11 A1BYJ C8 C9 SING N N 12 A1BYJ C1 H1 SING N N 13 A1BYJ C2 H3 SING N N 14 A1BYJ C2 H2 SING N N 15 A1BYJ C4 H4 SING N N 16 A1BYJ C5 H5 SING N N 17 A1BYJ C6 H6 SING N N 18 A1BYJ C7 H7 SING N N 19 A1BYJ C9 H8 SING N N 20 A1BYJ C9 H9 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BYJ SMILES ACDLabs 14.52 O=CN1Cc2ccccc2C1 A1BYJ InChI InChI 1.06 "InChI=1S/C9H9NO/c11-7-10-5-8-3-1-2-4-9(8)6-10/h1-4,7H,5-6H2" A1BYJ InChIKey InChI 1.06 YGKOJGIYEHULCD-UHFFFAOYSA-N A1BYJ SMILES_CANONICAL CACTVS 3.385 O=CN1Cc2ccccc2C1 A1BYJ SMILES CACTVS 3.385 O=CN1Cc2ccccc2C1 A1BYJ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)CN(C2)C=O" A1BYJ SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)CN(C2)C=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BYJ "SYSTEMATIC NAME" ACDLabs 14.52 1,3-dihydro-2H-isoindole-2-carbaldehyde A1BYJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 1,3-dihydroisoindole-2-carbaldehyde # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BYJ "Create component" 2025-02-27 RCSB A1BYJ "Modify PCM" 2025-02-28 RCSB A1BYJ "Initial release" 2026-04-01 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1BYJ _pdbx_chem_comp_synonyms.name "isoindoline-2-carbonyl fluoride, reacted form" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BYJ _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #