data_A1BYK # _chem_comp.id A1BYK _chem_comp.name "Alflutinib, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H33 F3 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-27 _chem_comp.pdbx_modified_date 2025-10-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 570.609 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BYK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9NIS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BYK C01 C1 C 0 1 N N N N N N 25.738 1.990 49.904 8.986 1.179 -0.257 C01 A1BYK 1 A1BYK C03 C2 C 0 1 Y N N N N N 24.283 0.704 51.410 6.494 1.415 -0.354 C03 A1BYK 2 A1BYK C04 C3 C 0 1 Y N N N N N 22.957 0.332 51.437 5.391 0.655 -0.127 C04 A1BYK 3 A1BYK C05 C4 C 0 1 Y N N N N N 22.329 0.862 50.284 5.873 -0.670 0.297 C05 A1BYK 4 A1BYK C06 C5 C 0 1 Y N N N N N 21.021 0.825 49.761 5.243 -1.857 0.666 C06 A1BYK 5 A1BYK C07 C6 C 0 1 Y N N N N N 20.728 1.465 48.565 6.001 -2.950 1.020 C07 A1BYK 6 A1BYK C08 C7 C 0 1 Y N N N N N 21.732 2.142 47.876 7.387 -2.874 1.012 C08 A1BYK 7 A1BYK C09 C8 C 0 1 Y N N N N N 23.018 2.181 48.385 8.024 -1.707 0.650 C09 A1BYK 8 A1BYK C10 C9 C 0 1 Y N N N N N 23.311 1.529 49.609 7.276 -0.592 0.289 C10 A1BYK 9 A1BYK C11 C10 C 0 1 Y N N N N N 22.290 -0.495 52.546 3.982 1.077 -0.276 C11 A1BYK 10 A1BYK C13 C11 C 0 1 Y N N N N N 20.375 -1.280 53.542 1.727 0.600 -0.155 C13 A1BYK 11 A1BYK C15 C12 C 0 1 Y N N N N N 22.374 -1.842 54.481 2.337 2.725 -0.814 C15 A1BYK 12 A1BYK C16 C13 C 0 1 Y N N N N N 23.054 -1.124 53.504 3.668 2.377 -0.690 C16 A1BYK 13 A1BYK C18 C14 C 0 1 Y N N N N N 17.986 -0.771 52.636 -0.622 0.101 0.097 C18 A1BYK 14 A1BYK C19 C15 C 0 1 Y N N N N N 16.755 -1.352 52.423 -1.643 -0.833 -0.052 C19 A1BYK 15 A1BYK C21 C16 C 0 1 Y N N N N N 16.159 0.242 50.893 -3.257 0.818 0.052 C21 A1BYK 16 A1BYK C22 C17 C 0 1 Y N N N N N 17.366 0.900 51.041 -2.288 1.809 0.211 C22 A1BYK 17 A1BYK C23 C18 C 0 1 Y N N N N N 18.289 0.371 51.926 -0.947 1.446 0.234 C23 A1BYK 18 A1BYK C25 C19 C 0 1 N N N N N N 18.371 3.230 50.903 -1.756 4.130 0.131 C25 A1BYK 19 A1BYK C27 C20 C 0 1 N N N N N N 18.486 4.789 50.268 -2.126 5.569 0.381 C27 A1BYK 20 A1BYK C28 C21 C 0 1 N N N N N N 18.342 5.697 51.183 -0.926 6.466 0.069 C28 A1BYK 21 A1BYK C30 C22 C 0 1 N N N N N N 15.040 0.092 48.669 -4.971 1.769 -1.263 C30 A1BYK 22 A1BYK C31 C23 C 0 1 N N N N N N 14.165 1.717 50.410 -5.458 0.012 0.331 C31 A1BYK 23 A1BYK C32 C24 C 0 1 N N N N N N 14.533 3.098 49.858 -6.899 0.481 0.542 C32 A1BYK 24 A1BYK C34 C25 C 0 1 N N N N N N 13.048 4.132 48.318 -9.086 -0.248 1.284 C34 A1BYK 25 A1BYK C35 C26 C 0 1 N N N N N N 15.290 3.663 47.673 -7.842 -1.580 -0.310 C35 A1BYK 26 A1BYK C37 C27 C 0 1 N N N N N N 15.332 -3.150 52.464 -2.426 -3.060 -0.332 C37 A1BYK 27 A1BYK C38 C28 C 0 1 N N N N N N 15.472 -4.637 52.713 -1.887 -4.486 -0.463 C38 A1BYK 28 A1BYK F39 F1 F 0 1 N N N N N N 15.821 -4.860 54.007 -1.159 -4.816 0.685 F39 A1BYK 29 A1BYK F40 F2 F 0 1 N N N N N N 16.430 -5.126 51.885 -2.956 -5.377 -0.610 F40 A1BYK 30 A1BYK F41 F3 F 0 1 N N N N N N 14.284 -5.238 52.450 -1.054 -4.568 -1.584 F41 A1BYK 31 A1BYK N02 N1 N 0 1 Y N N N N N 24.473 1.413 50.309 7.615 0.684 -0.111 N02 A1BYK 32 A1BYK N12 N2 N 0 1 Y N N N N N 20.979 -0.588 52.598 2.990 0.223 -0.023 N12 A1BYK 33 A1BYK N14 N3 N 0 1 Y N N N N N 21.055 -1.905 54.469 1.403 1.826 -0.541 N14 A1BYK 34 A1BYK N17 N4 N 0 1 N N N N N N 18.914 -1.378 53.591 0.720 -0.311 0.115 N17 A1BYK 35 A1BYK N20 N5 N 0 1 Y N N N N N 15.900 -0.844 51.571 -2.910 -0.454 -0.070 N20 A1BYK 36 A1BYK N24 N6 N 0 1 N N N N N N 17.675 2.105 50.292 -2.663 3.155 0.340 N24 A1BYK 37 A1BYK N29 N7 N 0 1 N N N N N N 15.124 0.702 49.983 -4.606 1.170 0.028 N29 A1BYK 38 A1BYK N33 N8 N 0 1 N N N N N N 14.154 3.207 48.454 -7.751 -0.677 0.845 N33 A1BYK 39 A1BYK O26 O1 O 0 1 N N N N N N 18.733 3.233 52.021 -0.643 3.849 -0.260 O26 A1BYK 40 A1BYK O36 O2 O 0 1 N N N N N N 16.399 -2.509 53.092 -1.335 -2.150 -0.182 O36 A1BYK 41 A1BYK H013 H1 H 0 0 N N N N N N 25.609 2.526 48.952 9.318 1.615 0.685 H013 A1BYK 42 A1BYK H012 H2 H 0 0 N N N N N N 26.084 2.693 50.676 9.644 0.352 -0.527 H012 A1BYK 43 A1BYK H011 H3 H 0 0 N N N N N N 26.482 1.190 49.777 9.017 1.937 -1.039 H011 A1BYK 44 A1BYK H031 H4 H 0 0 N N N N N N 25.030 0.462 52.151 6.482 2.443 -0.684 H031 A1BYK 45 A1BYK H061 H5 H 0 0 N N N N N N 20.244 0.297 50.293 4.165 -1.919 0.673 H061 A1BYK 46 A1BYK H071 H6 H 0 0 N N N N N N 19.724 1.438 48.169 5.516 -3.871 1.307 H071 A1BYK 47 A1BYK H081 H7 H 0 0 N N N N N N 21.506 2.637 46.943 7.971 -3.738 1.293 H081 A1BYK 48 A1BYK H091 H8 H 0 0 N N N N N N 23.796 2.707 47.851 9.103 -1.659 0.648 H091 A1BYK 49 A1BYK H151 H9 H 0 0 N N N N N N 22.928 -2.352 55.255 2.060 3.721 -1.127 H151 A1BYK 50 A1BYK H161 H10 H 0 0 N N N N N N 24.132 -1.062 53.496 4.448 3.091 -0.907 H161 A1BYK 51 A1BYK H231 H11 H 0 0 N N N N N N 19.246 0.853 52.060 -0.175 2.192 0.356 H231 A1BYK 52 A1BYK H271 H12 H 0 0 N N N N N N 19.474 4.910 49.800 -2.963 5.846 -0.259 H271 A1BYK 53 A1BYK H282 H13 H 0 0 N N N N N N 18.424 6.694 50.727 -0.089 6.188 0.710 H282 A1BYK 54 A1BYK H281 H14 H 0 0 N N N N N N 17.354 5.589 51.654 -0.641 6.340 -0.976 H281 A1BYK 55 A1BYK H303 H15 H 0 0 N N N N N N 14.212 0.546 48.106 -5.974 2.190 -1.197 H303 A1BYK 56 A1BYK H301 H16 H 0 0 N N N N N N 15.984 0.255 48.128 -4.261 2.558 -1.511 H301 A1BYK 57 A1BYK H302 H17 H 0 0 N N N N N N 14.861 -0.988 48.777 -4.949 1.003 -2.038 H302 A1BYK 58 A1BYK H312 H18 H 0 0 N N N N N N 13.165 1.440 50.046 -5.099 -0.476 1.237 H312 A1BYK 59 A1BYK H311 H19 H 0 0 N N N N N N 14.156 1.761 51.509 -5.423 -0.692 -0.500 H311 A1BYK 60 A1BYK H321 H20 H 0 0 N N N N N N 14.005 3.871 50.436 -6.935 1.185 1.373 H321 A1BYK 61 A1BYK H322 H21 H 0 0 N N N N N N 15.619 3.247 49.952 -7.259 0.969 -0.364 H322 A1BYK 62 A1BYK H342 H22 H 0 0 N N N N N N 12.764 4.212 47.258 -9.696 -1.125 1.502 H342 A1BYK 63 A1BYK H341 H23 H 0 0 N N N N N N 12.190 3.765 48.900 -8.994 0.363 2.182 H341 A1BYK 64 A1BYK H343 H24 H 0 0 N N N N N N 13.349 5.121 48.693 -9.558 0.336 0.494 H343 A1BYK 65 A1BYK H352 H25 H 0 0 N N N N N N 15.000 3.744 46.615 -8.334 -1.066 -1.136 H352 A1BYK 66 A1BYK H353 H26 H 0 0 N N N N N N 15.616 4.648 48.040 -6.840 -1.883 -0.615 H353 A1BYK 67 A1BYK H351 H27 H 0 0 N N N N N N 16.116 2.943 47.773 -8.421 -2.463 -0.036 H351 A1BYK 68 A1BYK H371 H28 H 0 0 N N N N N N 14.381 -2.789 52.882 -2.994 -2.802 -1.227 H371 A1BYK 69 A1BYK H372 H29 H 0 0 N N N N N N 15.358 -2.948 51.383 -3.076 -2.996 0.541 H372 A1BYK 70 A1BYK H171 H30 H 0 0 N N N N N N 18.517 -1.905 54.342 0.942 -1.233 0.317 H171 A1BYK 71 A1BYK H241 H31 H 0 0 N N N N N N 17.403 2.164 49.332 -3.575 3.384 0.579 H241 A1BYK 72 A1BYK H2 H32 H 0 1 N N N N N N 17.701 4.922 49.509 -2.411 5.694 1.426 H2 A1BYK 73 A1BYK H3 H33 H 0 1 N N N N N N 19.126 5.577 51.945 -1.193 7.507 0.250 H3 A1BYK 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BYK N02 C01 SING N N 1 A1BYK C03 N02 SING Y N 2 A1BYK C04 C03 DOUB Y N 3 A1BYK C06 C05 DOUB Y N 4 A1BYK C07 C06 SING Y N 5 A1BYK C08 C07 DOUB Y N 6 A1BYK C09 C08 SING Y N 7 A1BYK C10 C09 DOUB Y N 8 A1BYK C05 C04 SING Y N 9 A1BYK C11 C04 SING N N 10 A1BYK N12 C11 DOUB Y N 11 A1BYK C13 N12 SING Y N 12 A1BYK C15 N14 SING Y N 13 A1BYK C16 C15 DOUB Y N 14 A1BYK N14 C13 DOUB Y N 15 A1BYK N17 C13 SING N N 16 A1BYK C18 N17 SING N N 17 A1BYK C19 C18 DOUB Y N 18 A1BYK C21 N20 DOUB Y N 19 A1BYK C23 C22 DOUB Y N 20 A1BYK N24 C22 SING N N 21 A1BYK C25 N24 SING N N 22 A1BYK O26 C25 DOUB N N 23 A1BYK C27 C25 SING N N 24 A1BYK C28 C27 SING N N 25 A1BYK C22 C21 SING Y N 26 A1BYK N29 C21 SING N N 27 A1BYK C30 N29 SING N N 28 A1BYK C31 N29 SING N N 29 A1BYK C32 C31 SING N N 30 A1BYK N33 C32 SING N N 31 A1BYK C34 N33 SING N N 32 A1BYK C35 N33 SING N N 33 A1BYK N20 C19 SING Y N 34 A1BYK O36 C19 SING N N 35 A1BYK C37 O36 SING N N 36 A1BYK C38 C37 SING N N 37 A1BYK F39 C38 SING N N 38 A1BYK F40 C38 SING N N 39 A1BYK F41 C38 SING N N 40 A1BYK N02 C10 SING Y N 41 A1BYK C05 C10 SING Y N 42 A1BYK C11 C16 SING Y N 43 A1BYK C18 C23 SING Y N 44 A1BYK C01 H013 SING N N 45 A1BYK C01 H012 SING N N 46 A1BYK C01 H011 SING N N 47 A1BYK C03 H031 SING N N 48 A1BYK C06 H061 SING N N 49 A1BYK C07 H071 SING N N 50 A1BYK C08 H081 SING N N 51 A1BYK C09 H091 SING N N 52 A1BYK C15 H151 SING N N 53 A1BYK C16 H161 SING N N 54 A1BYK C23 H231 SING N N 55 A1BYK C27 H271 SING N N 56 A1BYK C28 H282 SING N N 57 A1BYK C28 H281 SING N N 58 A1BYK C30 H303 SING N N 59 A1BYK C30 H301 SING N N 60 A1BYK C30 H302 SING N N 61 A1BYK C31 H312 SING N N 62 A1BYK C31 H311 SING N N 63 A1BYK C32 H321 SING N N 64 A1BYK C32 H322 SING N N 65 A1BYK C34 H342 SING N N 66 A1BYK C34 H341 SING N N 67 A1BYK C34 H343 SING N N 68 A1BYK C35 H352 SING N N 69 A1BYK C35 H353 SING N N 70 A1BYK C35 H351 SING N N 71 A1BYK C37 H371 SING N N 72 A1BYK C37 H372 SING N N 73 A1BYK N17 H171 SING N N 74 A1BYK N24 H241 SING N N 75 A1BYK C27 H2 SING N N 76 A1BYK C28 H3 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BYK SMILES ACDLabs 14.52 "CN(C)CCN(C)c1nc(OCC(F)(F)F)c(cc1NC(=O)CC)Nc1nccc(n1)c1cn(C)c2ccccc21" A1BYK InChI InChI 1.06 "InChI=1S/C28H33F3N8O2/c1-6-24(40)33-21-15-22(26(41-17-28(29,30)31)36-25(21)38(4)14-13-37(2)3)35-27-32-12-11-20(34-27)19-16-39(5)23-10-8-7-9-18(19)23/h7-12,15-16H,6,13-14,17H2,1-5H3,(H,33,40)(H,32,34,35)" A1BYK InChIKey InChI 1.06 GAOWQJSMJRWONJ-UHFFFAOYSA-N A1BYK SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cc(Nc2nccc(n2)c3cn(C)c4ccccc34)c(OCC(F)(F)F)nc1N(C)CCN(C)C" A1BYK SMILES CACTVS 3.385 "CCC(=O)Nc1cc(Nc2nccc(n2)c3cn(C)c4ccccc34)c(OCC(F)(F)F)nc1N(C)CCN(C)C" A1BYK SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(nc1N(C)CCN(C)C)OCC(F)(F)F)Nc2nccc(n2)c3cn(c4c3cccc4)C" A1BYK SMILES "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(nc1N(C)CCN(C)C)OCC(F)(F)F)Nc2nccc(n2)c3cn(c4c3cccc4)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BYK "SYSTEMATIC NAME" ACDLabs 14.52 "N-[2-{[2-(dimethylamino)ethyl](methyl)amino}-5-{[(4P)-4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}-6-(2,2,2-trifluoroethoxy)pyridin-3-yl]propanamide" A1BYK "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[2-[2-(dimethylamino)ethyl-methyl-amino]-5-[[4-(1-methylindol-3-yl)pyrimidin-2-yl]amino]-6-[2,2,2-tris(fluoranyl)ethoxy]pyridin-3-yl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BYK "Create component" 2025-02-27 RCSB A1BYK "Modify PCM" 2025-02-27 RCSB A1BYK "Initial release" 2025-10-08 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BYK _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C28 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #