data_A1BYM # _chem_comp.id A1BYM _chem_comp.name "(3aR,7aS)-octahydro-2H-isoindole-2-carbaldehyde" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H15 N O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "octahydro-2H-isoindole-2-carbonyl fluoride, reacted" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-27 _chem_comp.pdbx_modified_date 2026-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 153.221 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BYM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9NIX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BYM C1 C1 C 0 1 N N N N N N 14.628 4.749 15.208 2.856 0.219 0.219 C1 A1BYM 1 A1BYM C2 C2 C 0 1 N N N N N N 16.992 3.812 16.104 0.613 -0.896 -0.001 C2 A1BYM 2 A1BYM C3 C3 C 0 1 N N S N N N 18.326 3.839 15.265 -0.531 -0.512 -0.957 C3 A1BYM 3 A1BYM C4 C4 C 0 1 N N N N N N 19.413 3.127 15.944 -1.789 -1.309 -0.720 C4 A1BYM 4 A1BYM C5 C5 C 0 1 N N N N N N 19.215 1.542 16.030 -2.395 -1.015 0.651 C5 A1BYM 5 A1BYM C6 C6 C 0 1 N N N N N N 18.911 0.958 14.546 -2.705 0.485 0.724 C6 A1BYM 6 A1BYM C7 C7 C 0 1 N N N N N N 17.689 1.844 13.942 -1.389 1.253 0.638 C7 A1BYM 7 A1BYM C8 C8 C 0 1 N N R N N N 17.985 3.288 13.964 -0.689 0.997 -0.698 C8 A1BYM 8 A1BYM C9 C9 C 0 1 N N N N N N 16.634 3.973 13.555 0.789 1.440 -0.511 C9 A1BYM 9 A1BYM N1 N1 N 0 1 N N N N N N 15.934 4.208 14.992 1.540 0.253 -0.072 N1 A1BYM 10 A1BYM O1 O1 O 0 1 N N N N N N 14.234 4.885 16.297 3.373 -0.820 0.568 O1 A1BYM 11 A1BYM H1 H1 H 0 1 N N N N N N 14.010 5.030 14.368 3.450 1.117 0.136 H1 A1BYM 12 A1BYM H2 H2 H 0 1 N N N N N N 17.013 4.547 16.922 0.236 -1.021 1.014 H2 A1BYM 13 A1BYM H3 H3 H 0 1 N N N N N N 16.792 2.811 16.515 1.104 -1.808 -0.340 H3 A1BYM 14 A1BYM H4 H4 H 0 1 N N N N N N 18.616 4.893 15.142 -0.202 -0.657 -1.986 H4 A1BYM 15 A1BYM H6 H5 H 0 1 N N N N N N 20.348 3.328 15.400 -2.518 -1.059 -1.492 H6 A1BYM 16 A1BYM H5 H6 H 0 1 N N N N N N 19.494 3.519 16.968 -1.555 -2.371 -0.785 H5 A1BYM 17 A1BYM H7 H7 H 0 1 N N N N N N 20.130 1.078 16.427 -3.314 -1.587 0.778 H7 A1BYM 18 A1BYM H8 H8 H 0 1 N N N N N N 18.370 1.313 16.695 -1.684 -1.282 1.433 H8 A1BYM 19 A1BYM H9 H9 H 0 1 N N N N N N 19.802 1.056 13.909 -3.349 0.767 -0.109 H9 A1BYM 20 A1BYM H10 H10 H 0 1 N N N N N N 18.619 -0.101 14.607 -3.202 0.712 1.667 H10 A1BYM 21 A1BYM H12 H11 H 0 1 N N N N N N 17.508 1.535 12.902 -1.591 2.320 0.738 H12 A1BYM 22 A1BYM H11 H12 H 0 1 N N N N N N 16.786 1.658 14.542 -0.736 0.936 1.451 H11 A1BYM 23 A1BYM H13 H13 H 0 1 N N N N N N 18.757 3.535 13.220 -1.183 1.508 -1.524 H13 A1BYM 24 A1BYM H14 H14 H 0 1 N N N N N N 16.027 3.313 12.917 1.190 1.806 -1.456 H14 A1BYM 25 A1BYM H15 H15 H 0 1 N N N N N N 16.810 4.926 13.034 0.850 2.221 0.247 H15 A1BYM 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BYM O1 C1 DOUB N N 1 A1BYM C1 N1 SING N N 2 A1BYM N1 C2 SING N N 3 A1BYM N1 C9 SING N N 4 A1BYM C2 C3 SING N N 5 A1BYM C3 C4 SING N N 6 A1BYM C3 C8 SING N N 7 A1BYM C4 C5 SING N N 8 A1BYM C5 C6 SING N N 9 A1BYM C6 C7 SING N N 10 A1BYM C7 C8 SING N N 11 A1BYM C8 C9 SING N N 12 A1BYM C1 H1 SING N N 13 A1BYM C2 H2 SING N N 14 A1BYM C2 H3 SING N N 15 A1BYM C3 H4 SING N N 16 A1BYM C4 H6 SING N N 17 A1BYM C4 H5 SING N N 18 A1BYM C5 H7 SING N N 19 A1BYM C5 H8 SING N N 20 A1BYM C6 H9 SING N N 21 A1BYM C6 H10 SING N N 22 A1BYM C7 H12 SING N N 23 A1BYM C7 H11 SING N N 24 A1BYM C8 H13 SING N N 25 A1BYM C9 H14 SING N N 26 A1BYM C9 H15 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BYM SMILES ACDLabs 14.52 O=CN1CC2CCCCC2C1 A1BYM InChI InChI 1.06 "InChI=1S/C9H15NO/c11-7-10-5-8-3-1-2-4-9(8)6-10/h7-9H,1-6H2/t8-,9+" A1BYM InChIKey InChI 1.06 ZBUZLQFBJLHZJJ-DTORHVGOSA-N A1BYM SMILES_CANONICAL CACTVS 3.385 "O=CN1C[C@H]2CCCC[C@H]2C1" A1BYM SMILES CACTVS 3.385 "O=CN1C[CH]2CCCC[CH]2C1" A1BYM SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1CC[C@H]2CN(C[C@H]2C1)C=O" A1BYM SMILES "OpenEye OEToolkits" 3.1.0.0 "C1CCC2CN(CC2C1)C=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BYM "SYSTEMATIC NAME" ACDLabs 14.52 "(3aR,7aS)-octahydro-2H-isoindole-2-carbaldehyde" A1BYM "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{a}~{S},7~{a}~{R})-1,3,3~{a},4,5,6,7,7~{a}-octahydroisoindole-2-carbaldehyde" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BYM "Create component" 2025-02-27 RCSB A1BYM "Initial release" 2026-04-01 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1BYM _pdbx_chem_comp_synonyms.name "octahydro-2H-isoindole-2-carbonyl fluoride, reacted" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BYM _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #