data_A1BYN # _chem_comp.id A1BYN _chem_comp.name "Befotertinib, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H34 F3 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-27 _chem_comp.pdbx_modified_date 2025-10-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 569.621 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BYN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MST _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BYN C01 C1 C 0 1 N N N N N N 14.784 3.494 51.628 -9.211 1.914 1.183 C01 A1BYN 1 A1BYN C03 C2 C 0 1 N N N N N N 12.977 4.003 50.175 -10.268 -0.223 1.604 C03 A1BYN 2 A1BYN C04 C3 C 0 1 N N N N N N 14.557 2.380 49.536 -8.185 -0.124 0.373 C04 A1BYN 3 A1BYN C05 C4 C 0 1 N N N N N N 14.402 1.204 50.501 -6.776 0.471 0.396 C05 A1BYN 4 A1BYN C07 C5 C 0 1 N N N N N N 15.334 -0.415 48.827 -6.484 0.233 -1.996 C07 A1BYN 5 A1BYN C08 C6 C 0 1 Y N N N N N 16.387 -0.225 51.102 -4.619 0.211 -0.541 C08 A1BYN 6 A1BYN C09 C7 C 0 1 Y N N N N N 16.197 -1.390 51.826 -4.240 1.545 -0.580 C09 A1BYN 7 A1BYN C10 C8 C 0 1 Y N N N N N 17.150 -1.797 52.740 -2.904 1.890 -0.451 C10 A1BYN 8 A1BYN C11 C9 C 0 1 Y N N N N N 18.292 -1.051 52.931 -1.941 0.898 -0.283 C11 A1BYN 9 A1BYN C12 C10 C 0 1 Y N N N N N 18.464 0.119 52.208 -2.319 -0.436 -0.244 C12 A1BYN 10 A1BYN C13 C11 C 0 1 Y N N N N N 17.520 0.540 51.292 -3.656 -0.782 -0.367 C13 A1BYN 11 A1BYN C15 C12 C 0 1 N N N N N N 18.322 2.981 50.982 -3.306 -3.017 0.381 C15 A1BYN 12 A1BYN C17 C13 C 0 1 N N N N N N 18.590 4.345 50.711 -3.653 -4.483 0.341 C17 A1BYN 13 A1BYN C18 C14 C 0 1 N N N N N N 19.258 5.433 51.455 -2.673 -5.263 1.219 C18 A1BYN 14 A1BYN C20 C15 C 0 1 Y N N N N N 20.698 -1.321 53.826 0.394 0.408 -0.647 C20 A1BYN 15 A1BYN C22 C16 C 0 1 Y N N N N N 22.786 -1.704 54.644 0.950 -1.487 -1.839 C22 A1BYN 16 A1BYN C23 C17 C 0 1 Y N N N N N 23.352 -0.926 53.640 2.288 -1.233 -1.612 C23 A1BYN 17 A1BYN C24 C18 C 0 1 Y N N N N N 22.481 -0.357 52.729 2.635 -0.097 -0.871 C24 A1BYN 18 A1BYN C26 C19 C 0 1 Y N N N N N 22.954 0.535 51.579 4.054 0.220 -0.601 C26 A1BYN 19 A1BYN C27 C20 C 0 1 Y N N N N N 24.144 1.236 51.539 5.136 -0.492 -1.010 C27 A1BYN 20 A1BYN C29 C21 C 0 1 Y N N N N N 23.046 1.655 49.674 5.969 1.248 0.145 C29 A1BYN 21 A1BYN C30 C22 C 0 1 Y N N N N N 22.631 2.127 48.403 6.744 2.203 0.794 C30 A1BYN 22 A1BYN C31 C23 C 0 1 Y N N N N N 21.412 1.727 47.879 6.137 3.257 1.441 C31 A1BYN 23 A1BYN C32 C24 C 0 1 Y N N N N N 20.594 0.862 48.603 4.755 3.379 1.453 C32 A1BYN 24 A1BYN C33 C25 C 0 1 Y N N N N N 21.005 0.401 49.847 3.970 2.445 0.814 C33 A1BYN 25 A1BYN C34 C26 C 0 1 Y N N N N N 22.247 0.807 50.387 4.569 1.372 0.158 C34 A1BYN 26 A1BYN C35 C27 C 0 1 N N N N N N 25.268 2.755 49.951 7.632 -0.383 -0.820 C35 A1BYN 27 A1BYN C36 C28 C 0 1 N N N N N N 26.267 1.951 49.129 8.093 -1.232 0.366 C36 A1BYN 28 A1BYN C41 C29 C 0 1 N N N N N N 15.991 -3.813 52.933 -3.573 4.162 -0.665 C41 A1BYN 29 A1BYN F37 F1 F 0 1 N N N N N N 25.704 1.605 47.941 7.226 -2.318 0.527 F37 A1BYN 30 A1BYN F38 F2 F 0 1 N N N N N N 26.613 0.818 49.797 9.389 -1.702 0.127 F38 A1BYN 31 A1BYN F39 F3 F 0 1 N N N N N N 27.372 2.709 48.903 8.087 -0.453 1.528 F39 A1BYN 32 A1BYN N02 N1 N 0 1 N N N N N N 14.380 3.638 50.239 -8.991 0.484 1.440 N02 A1BYN 33 A1BYN N06 N2 N 0 1 N N N N N N 15.374 0.189 50.144 -5.970 -0.138 -0.671 N06 A1BYN 34 A1BYN N14 N3 N 0 1 N N N N N N 17.706 1.754 50.513 -4.039 -2.131 -0.322 N14 A1BYN 35 A1BYN N19 N4 N 0 1 N N N N N N 19.262 -1.522 53.914 -0.589 1.249 -0.154 N19 A1BYN 36 A1BYN N21 N5 N 0 1 Y N N N N N 21.479 -1.887 54.714 0.040 -0.658 -1.350 N21 A1BYN 37 A1BYN N25 N6 N 0 1 Y N N N N N 21.202 -0.579 52.868 1.666 0.693 -0.410 N25 A1BYN 38 A1BYN N28 N7 N 0 1 Y N N N N N 24.181 1.899 50.385 6.275 0.109 -0.570 N28 A1BYN 39 A1BYN O16 O1 O 0 1 N N N N N N 18.745 3.110 52.075 -2.366 -2.634 1.045 O16 A1BYN 40 A1BYN O40 O2 O 0 1 N N N N N N 16.966 -2.970 53.471 -2.533 3.198 -0.490 O40 A1BYN 41 A1BYN H013 H1 H 0 0 N N N N N N 15.848 3.217 51.674 -9.750 2.355 2.021 H013 A1BYN 42 A1BYN H012 H2 H 0 0 N N N N N N 14.630 4.447 52.155 -8.250 2.414 1.065 H012 A1BYN 43 A1BYN H011 H3 H 0 0 N N N N N N 14.180 2.709 52.106 -9.797 2.034 0.271 H011 A1BYN 44 A1BYN H033 H4 H 0 0 N N N N N N 12.673 4.111 49.123 -10.075 -1.265 1.862 H033 A1BYN 45 A1BYN H032 H5 H 0 0 N N N N N N 12.372 3.218 50.652 -10.844 0.248 2.400 H032 A1BYN 46 A1BYN H031 H6 H 0 0 N N N N N N 12.822 4.956 50.701 -10.831 -0.178 0.672 H031 A1BYN 47 A1BYN H042 H7 H 0 0 N N N N N N 13.800 2.299 48.742 -8.649 0.077 -0.593 H042 A1BYN 48 A1BYN H041 H8 H 0 0 N N N N N N 15.562 2.353 49.090 -8.127 -1.201 0.530 H041 A1BYN 49 A1BYN H051 H9 H 0 0 N N N N N N 14.581 1.543 51.532 -6.833 1.548 0.238 H051 A1BYN 50 A1BYN H052 H10 H 0 0 N N N N N N 13.386 0.790 50.422 -6.312 0.269 1.361 H052 A1BYN 51 A1BYN H071 H11 H 0 0 N N N N N N 16.141 -1.157 48.739 -5.913 -0.286 -2.766 H071 A1BYN 52 A1BYN H073 H12 H 0 0 N N N N N N 14.363 -0.911 48.680 -7.535 -0.049 -2.070 H073 A1BYN 53 A1BYN H072 H13 H 0 0 N N N N N N 15.467 0.364 48.062 -6.386 1.310 -2.136 H072 A1BYN 54 A1BYN H091 H14 H 0 0 N N N N N N 15.305 -1.980 51.676 -4.986 2.314 -0.710 H091 A1BYN 55 A1BYN H121 H15 H 0 0 N N N N N N 19.353 0.712 52.364 -1.572 -1.205 -0.114 H121 A1BYN 56 A1BYN H171 H16 H 0 0 N N N N N N 19.160 4.302 49.771 -4.668 -4.626 0.714 H171 A1BYN 57 A1BYN H182 H17 H 0 0 N N N N N N 19.241 6.354 50.853 -2.737 -4.902 2.245 H182 A1BYN 58 A1BYN H181 H18 H 0 0 N N N N N N 18.730 5.606 52.404 -2.924 -6.323 1.190 H181 A1BYN 59 A1BYN H221 H19 H 0 0 N N N N N N 23.426 -2.167 55.380 0.648 -2.353 -2.411 H221 A1BYN 60 A1BYN H231 H20 H 0 0 N N N N N N 24.419 -0.774 53.575 3.050 -1.893 -2.000 H231 A1BYN 61 A1BYN H271 H21 H 0 0 N N N N N N 24.906 1.245 52.305 5.098 -1.398 -1.595 H271 A1BYN 62 A1BYN H301 H22 H 0 0 N N N N N N 23.265 2.798 47.843 7.821 2.118 0.792 H301 A1BYN 63 A1BYN H311 H23 H 0 0 N N N N N N 21.096 2.085 46.910 6.743 3.996 1.944 H311 A1BYN 64 A1BYN H321 H24 H 0 0 N N N N N N 19.643 0.551 48.198 4.293 4.210 1.964 H321 A1BYN 65 A1BYN H331 H25 H 0 0 N N N N N N 20.372 -0.272 50.406 2.894 2.542 0.825 H331 A1BYN 66 A1BYN H352 H26 H 0 0 N N N N N N 24.864 3.573 49.336 8.308 0.463 -0.946 H352 A1BYN 67 A1BYN H351 H27 H 0 0 N N N N N N 25.775 3.175 50.832 7.637 -0.990 -1.725 H351 A1BYN 68 A1BYN H413 H28 H 0 0 N N N N N N 15.899 -4.714 53.557 -3.142 5.163 -0.678 H413 A1BYN 69 A1BYN H411 H29 H 0 0 N N N N N N 15.026 -3.286 52.906 -4.086 3.976 -1.608 H411 A1BYN 70 A1BYN H412 H30 H 0 0 N N N N N N 16.280 -4.102 51.912 -4.284 4.084 0.157 H412 A1BYN 71 A1BYN H141 H32 H 0 0 N N N N N N 17.380 1.742 49.568 -4.832 -2.426 -0.797 H141 A1BYN 72 A1BYN H191 H33 H 0 0 N N N N N N 18.912 -2.020 54.707 -0.343 2.080 0.281 H191 A1BYN 73 A1BYN H2 H35 H 0 1 N N N N N N 17.590 4.759 50.514 -3.590 -4.844 -0.685 H2 A1BYN 74 A1BYN H3 H34 H 0 1 N N N N N N 20.301 5.149 51.661 -1.658 -5.120 0.846 H3 A1BYN 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BYN N02 C01 SING N N 1 A1BYN C03 N02 SING N N 2 A1BYN C04 N02 SING N N 3 A1BYN C05 C04 SING N N 4 A1BYN N06 C05 SING N N 5 A1BYN C07 N06 SING N N 6 A1BYN C08 N06 SING N N 7 A1BYN C09 C08 DOUB Y N 8 A1BYN C10 C09 SING Y N 9 A1BYN C13 C12 DOUB Y N 10 A1BYN N14 C13 SING N N 11 A1BYN C15 N14 SING N N 12 A1BYN O16 C15 DOUB N N 13 A1BYN C17 C15 SING N N 14 A1BYN C18 C17 SING N N 15 A1BYN C12 C11 SING Y N 16 A1BYN N19 C11 SING N N 17 A1BYN C20 N19 SING N N 18 A1BYN N21 C20 DOUB Y N 19 A1BYN C22 N21 SING Y N 20 A1BYN C23 C22 DOUB Y N 21 A1BYN C24 C23 SING Y N 22 A1BYN N25 C24 DOUB Y N 23 A1BYN C26 C24 SING N N 24 A1BYN C27 C26 DOUB Y N 25 A1BYN N28 C27 SING Y N 26 A1BYN C30 C29 DOUB Y N 27 A1BYN C31 C30 SING Y N 28 A1BYN C32 C31 DOUB Y N 29 A1BYN C33 C32 SING Y N 30 A1BYN C34 C33 DOUB Y N 31 A1BYN C29 N28 SING Y N 32 A1BYN C35 N28 SING N N 33 A1BYN C36 C35 SING N N 34 A1BYN F37 C36 SING N N 35 A1BYN F38 C36 SING N N 36 A1BYN F39 C36 SING N N 37 A1BYN C11 C10 DOUB Y N 38 A1BYN O40 C10 SING N N 39 A1BYN C41 O40 SING N N 40 A1BYN C08 C13 SING Y N 41 A1BYN C20 N25 SING Y N 42 A1BYN C26 C34 SING Y N 43 A1BYN C29 C34 SING Y N 44 A1BYN C01 H013 SING N N 45 A1BYN C01 H012 SING N N 46 A1BYN C01 H011 SING N N 47 A1BYN C03 H033 SING N N 48 A1BYN C03 H032 SING N N 49 A1BYN C03 H031 SING N N 50 A1BYN C04 H042 SING N N 51 A1BYN C04 H041 SING N N 52 A1BYN C05 H051 SING N N 53 A1BYN C05 H052 SING N N 54 A1BYN C07 H071 SING N N 55 A1BYN C07 H073 SING N N 56 A1BYN C07 H072 SING N N 57 A1BYN C09 H091 SING N N 58 A1BYN C12 H121 SING N N 59 A1BYN C17 H171 SING N N 60 A1BYN C18 H182 SING N N 61 A1BYN C18 H181 SING N N 62 A1BYN C22 H221 SING N N 63 A1BYN C23 H231 SING N N 64 A1BYN C27 H271 SING N N 65 A1BYN C30 H301 SING N N 66 A1BYN C31 H311 SING N N 67 A1BYN C32 H321 SING N N 68 A1BYN C33 H331 SING N N 69 A1BYN C35 H352 SING N N 70 A1BYN C35 H351 SING N N 71 A1BYN C41 H413 SING N N 72 A1BYN C41 H411 SING N N 73 A1BYN C41 H412 SING N N 74 A1BYN N14 H141 SING N N 75 A1BYN N19 H191 SING N N 76 A1BYN C17 H2 SING N N 77 A1BYN C18 H3 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BYN SMILES ACDLabs 14.52 "CN(C)CCN(C)c1cc(OC)c(cc1NC(=O)CC)Nc1nccc(n1)c1cn(CC(F)(F)F)c2ccccc21" A1BYN InChI InChI 1.06 "InChI=1S/C29H34F3N7O2/c1-6-27(40)34-22-15-23(26(41-5)16-25(22)38(4)14-13-37(2)3)36-28-33-12-11-21(35-28)20-17-39(18-29(30,31)32)24-10-8-7-9-19(20)24/h7-12,15-17H,6,13-14,18H2,1-5H3,(H,34,40)(H,33,35,36)" A1BYN InChIKey InChI 1.06 IGKYGCHLPDPQHJ-UHFFFAOYSA-N A1BYN SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cc(Nc2nccc(n2)c3cn(CC(F)(F)F)c4ccccc34)c(OC)cc1N(C)CCN(C)C" A1BYN SMILES CACTVS 3.385 "CCC(=O)Nc1cc(Nc2nccc(n2)c3cn(CC(F)(F)F)c4ccccc34)c(OC)cc1N(C)CCN(C)C" A1BYN SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(cc1N(C)CCN(C)C)OC)Nc2nccc(n2)c3cn(c4c3cccc4)CC(F)(F)F" A1BYN SMILES "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(cc1N(C)CCN(C)C)OC)Nc2nccc(n2)c3cn(c4c3cccc4)CC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BYN "SYSTEMATIC NAME" ACDLabs 14.52 "N-[2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-({(4P)-4-[1-(2,2,2-trifluoroethyl)-1H-indol-3-yl]pyrimidin-2-yl}amino)phenyl]propanamide" A1BYN "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[2-[2-(dimethylamino)ethyl-methyl-amino]-4-methoxy-5-[[4-[1-[2,2,2-tris(fluoranyl)ethyl]indol-3-yl]pyrimidin-2-yl]amino]phenyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BYN "Create component" 2025-02-27 RCSB A1BYN "Modify PCM" 2025-02-27 RCSB A1BYN "Modify atom id" 2025-10-01 RCSB A1BYN "Initial release" 2025-10-08 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BYN _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #