data_A1BYS # _chem_comp.id A1BYS _chem_comp.name "N-[2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-({(4M)-4-[(4S)-8-methylimidazo[1,2-a]pyridin-3-yl]pyrimidin-2-yl}amino)phenyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H34 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-28 _chem_comp.pdbx_modified_date 2025-10-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 502.611 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BYS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9NJN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BYS C01 C1 C 0 1 N N N N N N -6.554 18.899 50.950 -1.921 5.108 -1.041 C01 A1BYS 1 A1BYS C02 C2 C 0 1 N N N N N N -5.166 18.818 50.382 -2.841 4.264 -0.157 C02 A1BYS 2 A1BYS C03 C3 C 0 1 N N N N N N -3.748 18.735 50.844 -2.391 2.827 -0.190 C03 A1BYS 3 A1BYS C05 C4 C 0 1 Y N N N N N -1.372 17.690 51.017 -2.697 0.543 0.416 C05 A1BYS 4 A1BYS C06 C5 C 0 1 Y N N N N N -0.863 18.537 51.982 -1.389 0.195 0.112 C06 A1BYS 5 A1BYS C07 C6 C 0 1 Y N N N N N 0.353 18.291 52.582 -1.034 -1.141 0.004 C07 A1BYS 6 A1BYS C09 C7 C 0 1 Y N N N N N 0.942 20.600 53.514 1.334 -0.684 0.108 C09 A1BYS 7 A1BYS C11 C8 C 0 1 Y N N N N N 1.716 22.610 54.301 2.050 1.143 1.322 C11 A1BYS 8 A1BYS C12 C9 C 0 1 Y N N N N N 1.008 23.252 53.367 3.350 0.891 0.929 C12 A1BYS 9 A1BYS C13 C10 C 0 1 Y N N N N N 0.260 22.554 52.487 3.592 -0.206 0.090 C13 A1BYS 10 A1BYS C14 C11 C 0 1 Y N N N N N -0.566 23.276 51.426 4.960 -0.518 -0.358 C14 A1BYS 11 A1BYS C15 C12 C 0 1 Y N N N N N -0.843 24.529 51.552 5.327 -1.470 -1.285 C15 A1BYS 12 A1BYS C17 C13 C 0 1 Y N N N N N -1.769 23.730 49.662 7.154 -0.512 -0.607 C17 A1BYS 13 A1BYS C18 C14 C 0 1 Y N N N N N -2.424 23.453 48.459 8.476 -0.089 -0.373 C18 A1BYS 14 A1BYS C19 C15 C 0 1 N N N N N N -3.182 24.537 47.703 9.624 -0.739 -1.102 C19 A1BYS 15 A1BYS C20 C16 C 0 1 Y N N N N N -2.355 22.121 47.969 8.709 0.914 0.518 C20 A1BYS 16 A1BYS C21 C17 C 0 1 Y N N N N N -1.659 21.109 48.653 7.630 1.511 1.189 C21 A1BYS 17 A1BYS C22 C18 C 0 1 Y N N N N N -1.026 21.401 49.822 6.368 1.091 0.954 C22 A1BYS 18 A1BYS C25 C19 C 0 1 Y N N N N N 1.076 17.184 52.230 -1.991 -2.134 0.201 C25 A1BYS 19 A1BYS N04 N1 N 0 1 N N N N N N -2.648 17.918 50.356 -3.057 1.895 0.520 N04 A1BYS 20 A1BYS N08 N2 N 0 1 N N N N N N 0.905 19.154 53.611 0.289 -1.493 -0.304 N08 A1BYS 21 A1BYS C27 C20 C 0 1 N N N N N N 2.710 15.602 52.687 -2.674 -4.410 0.309 C27 A1BYS 22 A1BYS C28 C21 C 0 1 Y N N N N N 0.589 16.332 51.271 -3.297 -1.788 0.505 C28 A1BYS 23 A1BYS C29 C22 C 0 1 Y N N N N N -0.628 16.576 50.670 -3.653 -0.451 0.613 C29 A1BYS 24 A1BYS C31 C23 C 0 1 N N N N N N -2.084 14.661 49.896 -5.905 -0.609 -0.096 C31 A1BYS 25 A1BYS C32 C24 C 0 1 N N N N N N -3.193 14.887 48.876 -7.292 -0.004 0.133 C32 A1BYS 26 A1BYS C34 C25 C 0 1 N N N N N N -3.635 14.519 46.589 -9.607 -0.145 -0.561 C34 A1BYS 27 A1BYS C35 C26 C 0 1 N N N N N N -3.762 12.723 48.145 -7.849 -0.036 -2.223 C35 A1BYS 28 A1BYS C36 C27 C 0 1 N N N N N N -0.435 15.760 48.353 -5.347 -0.577 2.260 C36 A1BYS 29 A1BYS N10 N3 N 0 1 Y N N N N N 1.688 21.311 54.378 1.078 0.347 0.900 N10 A1BYS 30 A1BYS N16 N4 N 0 1 Y N N N N N -1.610 24.922 50.467 6.648 -1.441 -1.412 N16 A1BYS 31 A1BYS N23 N5 N 0 1 Y N N N N N -1.070 22.704 50.348 6.124 0.090 0.063 N23 A1BYS 32 A1BYS N24 N6 N 0 1 Y N N N N N 0.213 21.233 52.565 2.563 -0.964 -0.295 N24 A1BYS 33 A1BYS N30 N7 N 0 1 N N N N N N -1.068 15.657 49.651 -4.975 -0.101 0.922 N30 A1BYS 34 A1BYS N33 N8 N 0 1 N N N N N N -3.061 13.941 47.790 -8.222 -0.512 -0.884 N33 A1BYS 35 A1BYS O26 O1 O 0 1 N N N N N N 2.301 16.925 52.831 -1.643 -3.445 0.094 O26 A1BYS 36 A1BYS O37 O2 O 0 1 N N N N N N -3.700 19.327 51.860 -1.428 2.508 -0.855 O37 A1BYS 37 A1BYS H011 H1 H 0 0 N N N N N N -7.285 18.942 50.129 -2.247 6.148 -1.018 H011 A1BYS 38 A1BYS H1 H2 H 0 1 N N N N N N -6.749 18.011 51.569 -0.898 5.039 -0.670 H1 A1BYS 39 A1BYS H012 H3 H 0 0 N N N N N N -6.645 19.804 51.569 -1.961 4.737 -2.066 H012 A1BYS 40 A1BYS H021 H4 H 0 0 N N N N N N -5.242 17.923 49.747 -2.801 4.634 0.867 H021 A1BYS 41 A1BYS H2 H5 H 0 1 N N N N N N -5.137 19.716 49.748 -3.864 4.333 -0.528 H2 A1BYS 42 A1BYS H061 H6 H 0 0 N N N N N N -1.429 19.410 52.272 -0.647 0.965 -0.042 H061 A1BYS 43 A1BYS H111 H7 H 0 0 N N N N N N 2.317 23.174 54.999 1.829 1.981 1.967 H111 A1BYS 44 A1BYS H121 H8 H 0 0 N N N N N N 1.034 24.330 53.316 4.160 1.525 1.258 H121 A1BYS 45 A1BYS H151 H9 H 0 0 N N N N N N -0.530 25.165 52.366 4.655 -2.127 -1.817 H151 A1BYS 46 A1BYS H193 H10 H 0 0 N N N N N N -2.502 25.036 46.997 9.813 -0.205 -2.033 H193 A1BYS 47 A1BYS H192 H11 H 0 0 N N N N N N -4.017 24.082 47.149 10.516 -0.707 -0.477 H192 A1BYS 48 A1BYS H191 H12 H 0 0 N N N N N N -3.575 25.276 48.417 9.372 -1.776 -1.324 H191 A1BYS 49 A1BYS H201 H13 H 0 0 N N N N N N -2.853 21.878 47.042 9.718 1.249 0.707 H201 A1BYS 50 A1BYS H211 H14 H 0 0 N N N N N N -1.627 20.106 48.253 7.810 2.307 1.897 H211 A1BYS 51 A1BYS H221 H15 H 0 0 N N N N N N -0.487 20.627 50.348 5.544 1.556 1.475 H221 A1BYS 52 A1BYS H041 H16 H 0 0 N N N N N N -2.783 17.466 49.474 -3.787 2.159 1.102 H041 A1BYS 53 A1BYS H081 H17 H 0 0 N N N N N N 1.281 18.727 54.433 0.471 -2.303 -0.806 H081 A1BYS 54 A1BYS H273 H18 H 0 0 N N N N N N 3.682 15.462 53.182 -3.076 -4.295 1.315 H273 A1BYS 55 A1BYS H271 H19 H 0 0 N N N N N N 1.965 14.936 53.147 -3.471 -4.259 -0.420 H271 A1BYS 56 A1BYS H272 H20 H 0 0 N N N N N N 2.806 15.362 51.618 -2.263 -5.413 0.194 H272 A1BYS 57 A1BYS H281 H21 H 0 0 N N N N N N 1.163 15.463 50.985 -4.039 -2.558 0.657 H281 A1BYS 58 A1BYS H312 H22 H 0 0 N N N N N N -1.660 13.653 49.775 -5.966 -1.695 -0.022 H312 A1BYS 59 A1BYS H311 H23 H 0 0 N N N N N N -2.482 14.771 50.916 -5.547 -0.332 -1.087 H311 A1BYS 60 A1BYS H321 H24 H 0 0 N N N N N N -4.170 14.750 49.363 -7.650 -0.282 1.125 H321 A1BYS 61 A1BYS H322 H25 H 0 0 N N N N N N -3.121 15.910 48.479 -7.231 1.082 0.060 H322 A1BYS 62 A1BYS H342 H26 H 0 0 N N N N N N -3.539 13.806 45.757 -9.694 0.941 -0.518 H342 A1BYS 63 A1BYS H343 H27 H 0 0 N N N N N N -4.699 14.741 46.761 -10.274 -0.534 -1.330 H343 A1BYS 64 A1BYS H341 H28 H 0 0 N N N N N N -3.102 15.448 46.339 -9.880 -0.570 0.405 H341 A1BYS 65 A1BYS H353 H29 H 0 0 N N N N N N -3.669 11.994 47.326 -6.844 -0.382 -2.464 H353 A1BYS 66 A1BYS H351 H30 H 0 0 N N N N N N -3.324 12.302 49.062 -8.554 -0.427 -2.956 H351 A1BYS 67 A1BYS H352 H31 H 0 0 N N N N N N -4.825 12.949 48.316 -7.873 1.053 -2.240 H352 A1BYS 68 A1BYS H363 H32 H 0 0 N N N N N N -0.862 15.006 47.675 -4.685 -0.130 3.002 H363 A1BYS 69 A1BYS H361 H33 H 0 0 N N N N N N -0.608 16.764 47.939 -6.377 -0.292 2.474 H361 A1BYS 70 A1BYS H362 H34 H 0 0 N N N N N N 0.646 15.588 48.458 -5.256 -1.662 2.299 H362 A1BYS 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BYS C01 C02 SING N N 1 A1BYS C02 C03 SING N N 2 A1BYS C03 N04 SING N N 3 A1BYS C03 O37 DOUB N N 4 A1BYS N04 C05 SING N N 5 A1BYS C05 C29 DOUB Y N 6 A1BYS C05 C06 SING Y N 7 A1BYS C06 C07 DOUB Y N 8 A1BYS C07 N08 SING N N 9 A1BYS C07 C25 SING Y N 10 A1BYS N08 C09 SING N N 11 A1BYS C09 N24 DOUB Y N 12 A1BYS C09 N10 SING Y N 13 A1BYS N10 C11 DOUB Y N 14 A1BYS C11 C12 SING Y N 15 A1BYS C12 C13 DOUB Y N 16 A1BYS C13 C14 SING N N 17 A1BYS C13 N24 SING Y N 18 A1BYS C14 N23 SING Y N 19 A1BYS C14 C15 DOUB Y N 20 A1BYS C15 N16 SING Y N 21 A1BYS N16 C17 DOUB Y N 22 A1BYS C17 C18 SING Y N 23 A1BYS C17 N23 SING Y N 24 A1BYS C18 C19 SING N N 25 A1BYS C18 C20 DOUB Y N 26 A1BYS C20 C21 SING Y N 27 A1BYS C21 C22 DOUB Y N 28 A1BYS C22 N23 SING Y N 29 A1BYS C25 O26 SING N N 30 A1BYS C25 C28 DOUB Y N 31 A1BYS O26 C27 SING N N 32 A1BYS C28 C29 SING Y N 33 A1BYS C29 N30 SING N N 34 A1BYS N30 C31 SING N N 35 A1BYS N30 C36 SING N N 36 A1BYS C31 C32 SING N N 37 A1BYS C32 N33 SING N N 38 A1BYS N33 C34 SING N N 39 A1BYS N33 C35 SING N N 40 A1BYS C01 H011 SING N N 41 A1BYS C01 H1 SING N N 42 A1BYS C01 H012 SING N N 43 A1BYS C02 H021 SING N N 44 A1BYS C02 H2 SING N N 45 A1BYS C06 H061 SING N N 46 A1BYS C11 H111 SING N N 47 A1BYS C12 H121 SING N N 48 A1BYS C15 H151 SING N N 49 A1BYS C19 H193 SING N N 50 A1BYS C19 H192 SING N N 51 A1BYS C19 H191 SING N N 52 A1BYS C20 H201 SING N N 53 A1BYS C21 H211 SING N N 54 A1BYS C22 H221 SING N N 55 A1BYS N04 H041 SING N N 56 A1BYS N08 H081 SING N N 57 A1BYS C27 H273 SING N N 58 A1BYS C27 H271 SING N N 59 A1BYS C27 H272 SING N N 60 A1BYS C28 H281 SING N N 61 A1BYS C31 H312 SING N N 62 A1BYS C31 H311 SING N N 63 A1BYS C32 H321 SING N N 64 A1BYS C32 H322 SING N N 65 A1BYS C34 H342 SING N N 66 A1BYS C34 H343 SING N N 67 A1BYS C34 H341 SING N N 68 A1BYS C35 H353 SING N N 69 A1BYS C35 H351 SING N N 70 A1BYS C35 H352 SING N N 71 A1BYS C36 H363 SING N N 72 A1BYS C36 H361 SING N N 73 A1BYS C36 H362 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BYS SMILES ACDLabs 14.52 "CN(C)CCN(C)c1cc(OC)c(cc1NC(=O)CC)Nc1nccc(n1)c1cnc2c(C)cccn12" A1BYS InChI InChI 1.06 "InChI=1S/C27H34N8O2/c1-7-25(36)30-20-15-21(24(37-6)16-22(20)34(5)14-13-33(3)4)32-27-28-11-10-19(31-27)23-17-29-26-18(2)9-8-12-35(23)26/h8-12,15-17H,7,13-14H2,1-6H3,(H,30,36)(H,28,31,32)" A1BYS InChIKey InChI 1.06 XQQWWBLOZZFKTL-UHFFFAOYSA-N A1BYS SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cc(Nc2nccc(n2)c3cnc4n3cccc4C)c(OC)cc1N(C)CCN(C)C" A1BYS SMILES CACTVS 3.385 "CCC(=O)Nc1cc(Nc2nccc(n2)c3cnc4n3cccc4C)c(OC)cc1N(C)CCN(C)C" A1BYS SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(cc1N(C)CCN(C)C)OC)Nc2nccc(n2)c3cnc4n3cccc4C" A1BYS SMILES "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1cc(c(cc1N(C)CCN(C)C)OC)Nc2nccc(n2)c3cnc4n3cccc4C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BYS "SYSTEMATIC NAME" ACDLabs 14.52 "N-[2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-({(4M)-4-[(4S)-8-methylimidazo[1,2-a]pyridin-3-yl]pyrimidin-2-yl}amino)phenyl]propanamide" A1BYS "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[2-[2-(dimethylamino)ethyl-methyl-amino]-4-methoxy-5-[[4-(8-methylimidazo[1,2-a]pyridin-3-yl)pyrimidin-2-yl]amino]phenyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BYS "Create component" 2025-02-28 RCSB A1BYS "Modify PCM" 2025-02-28 RCSB A1BYS "Initial release" 2025-10-08 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1BYS _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C01 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #