data_A1BZ8 # _chem_comp.id A1BZ8 _chem_comp.name "5-{(3R)-3-[3-({[3-chloro-4-(trifluoromethoxy)phenyl]methyl}amino)propoxy]pyrrolidin-1-yl}benzo[c][2,6]naphthyridine-8-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H26 Cl F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-12 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 574.979 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BZ8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I8F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BZ8 C25 C1 C 0 1 Y N N N N N 6.663 5.950 16.730 -7.818 0.157 -1.287 C25 A1BZ8 1 A1BZ8 C26 C2 C 0 1 Y N N N N N 5.457 6.031 16.084 -6.728 -0.676 -1.462 C26 A1BZ8 2 A1BZ8 C27 C3 C 0 1 N N N N N N 8.902 5.895 18.939 -9.965 1.242 1.477 C27 A1BZ8 3 A1BZ8 C17 C4 C 0 1 N N N N N N -0.766 5.982 13.434 -0.088 -2.402 -0.571 C17 A1BZ8 4 A1BZ8 C18 C5 C 0 1 N N N N N N 0.243 5.831 14.595 -1.318 -1.512 -0.381 C18 A1BZ8 5 A1BZ8 C16 C6 C 0 1 N N N N N N -4.048 4.722 13.597 3.447 -1.456 -1.074 C16 A1BZ8 6 A1BZ8 C15 C7 C 0 1 N N R N N N -3.186 6.019 13.361 2.308 -2.363 -0.544 C15 A1BZ8 7 A1BZ8 C14 C8 C 0 1 N N N N N N -4.048 7.159 13.941 2.873 -2.802 0.833 C14 A1BZ8 8 A1BZ8 C13 C9 C 0 1 N N N N N N -4.819 6.539 15.132 4.386 -2.937 0.561 C13 A1BZ8 9 A1BZ8 C11 C10 C 0 1 Y N N N N N -6.135 3.286 19.410 9.209 -1.052 0.892 C11 A1BZ8 10 A1BZ8 C9 C11 C 0 1 Y N N N N N -5.834 5.525 17.717 7.313 -2.962 0.310 C9 A1BZ8 11 A1BZ8 C8 C12 C 0 1 Y N N N N N -5.632 4.232 17.167 6.981 -1.617 0.136 C8 A1BZ8 12 A1BZ8 C2 C13 C 0 1 Y N N N N N -5.788 -0.667 17.631 8.135 3.095 0.377 C2 A1BZ8 13 A1BZ8 C1 C14 C 0 1 Y N N N N N -5.446 -0.695 16.253 6.850 3.420 -0.081 C1 A1BZ8 14 A1BZ8 C3 C15 C 0 1 Y N N N N N -5.897 0.570 18.270 8.498 1.793 0.548 C3 A1BZ8 15 A1BZ8 C5 C16 C 0 1 Y N N N N N -5.402 1.648 16.131 6.290 1.075 -0.195 C5 A1BZ8 16 A1BZ8 C6 C17 C 0 1 Y N N N N N -5.278 0.424 15.501 5.931 2.419 -0.366 C6 A1BZ8 17 A1BZ8 F2 F1 F 0 1 N N N N N N 7.981 5.129 19.517 -8.971 1.738 2.327 F2 A1BZ8 18 A1BZ8 F F2 F 0 1 N N N N N N 9.603 5.106 18.139 -10.377 -0.017 1.925 F A1BZ8 19 A1BZ8 F1 F3 F 0 1 N N N N N N 9.744 6.341 19.853 -11.057 2.117 1.477 F1 A1BZ8 20 A1BZ8 O3 O1 O 0 1 N N N N N N 8.397 6.947 18.142 -9.445 1.130 0.150 O3 A1BZ8 21 A1BZ8 C24 C18 C 0 1 Y N N N N N 7.113 6.973 17.565 -8.374 0.312 -0.025 C24 A1BZ8 22 A1BZ8 C23 C19 C 0 1 Y N N N N N 6.313 8.128 17.752 -7.835 -0.368 1.057 C23 A1BZ8 23 A1BZ8 C22 C20 C 0 1 Y N N N N N 5.084 8.224 17.067 -6.746 -1.199 0.876 C22 A1BZ8 24 A1BZ8 CL CL1 CL 0 0 N N N N N N 7.600 4.620 16.368 -8.485 1.012 -2.643 CL A1BZ8 25 A1BZ8 C21 C21 C 0 1 Y N N N N N 4.681 7.176 16.215 -6.193 -1.353 -0.382 C21 A1BZ8 26 A1BZ8 C20 C22 C 0 1 N N N N N N 3.522 7.398 15.297 -5.006 -2.260 -0.576 C20 A1BZ8 27 A1BZ8 N3 N1 N 0 1 N N N N N N 2.436 6.426 15.445 -3.767 -1.492 -0.395 N3 A1BZ8 28 A1BZ8 C19 C23 C 0 1 N N N N N N 1.584 6.444 14.250 -2.586 -2.346 -0.577 C19 A1BZ8 29 A1BZ8 O2 O2 O 0 1 N N N N N N -2.011 5.957 14.131 1.096 -1.623 -0.388 O2 A1BZ8 30 A1BZ8 N2 N2 N 0 1 N N N N N N -4.926 5.046 14.796 4.693 -2.111 -0.621 N2 A1BZ8 31 A1BZ8 C7 C24 C 0 1 Y N N N N N -5.280 3.983 15.762 5.667 -1.175 -0.331 C7 A1BZ8 32 A1BZ8 C12 C25 C 0 1 Y N N N N N -5.815 3.082 18.032 7.958 -0.640 0.443 C12 A1BZ8 33 A1BZ8 N1 N3 N 0 1 Y N N N N N -6.305 4.542 19.925 9.465 -2.338 1.025 N1 A1BZ8 34 A1BZ8 C10 C26 C 0 1 Y N N N N N -6.163 5.608 19.059 8.571 -3.273 0.752 C10 A1BZ8 35 A1BZ8 C4 C27 C 0 1 Y N N N N N -5.698 1.741 17.500 7.591 0.769 0.267 C4 A1BZ8 36 A1BZ8 N N4 N 0 1 Y N N N N N -5.217 2.765 15.286 5.404 0.102 -0.470 N A1BZ8 37 A1BZ8 C C28 C 0 1 N N N N N N -5.162 -2.000 15.629 6.471 4.836 -0.260 C A1BZ8 38 A1BZ8 O1 O3 O 0 1 N N N N N N -5.231 -2.224 14.421 5.359 5.122 -0.656 O1 A1BZ8 39 A1BZ8 O O4 O 0 1 N N N N N N -4.825 -2.978 16.431 7.359 5.811 0.017 O A1BZ8 40 A1BZ8 H1 H1 H 0 1 N N N N N N 5.111 5.208 15.476 -6.295 -0.799 -2.444 H1 A1BZ8 41 A1BZ8 H2 H2 H 0 1 N N N N N N -0.687 5.147 12.723 -0.108 -3.210 0.161 H2 A1BZ8 42 A1BZ8 H3 H3 H 0 1 N N N N N N -0.624 6.933 12.900 -0.095 -2.822 -1.577 H3 A1BZ8 43 A1BZ8 H4 H4 H 0 1 N N N N N N -0.161 6.333 15.487 -1.311 -1.092 0.625 H4 A1BZ8 44 A1BZ8 H5 H5 H 0 1 N N N N N N 0.384 4.761 14.809 -1.298 -0.704 -1.112 H5 A1BZ8 45 A1BZ8 H6 H6 H 0 1 N N N N N N -4.666 4.502 12.714 3.418 -1.408 -2.163 H6 A1BZ8 46 A1BZ8 H7 H7 H 0 1 N N N N N N -3.399 3.861 13.814 3.368 -0.456 -0.648 H7 A1BZ8 47 A1BZ8 H8 H8 H 0 1 N N N N N N -2.997 6.170 12.288 2.158 -3.223 -1.197 H8 A1BZ8 48 A1BZ8 H9 H9 H 0 1 N N N N N N -3.409 7.985 14.286 2.683 -2.039 1.588 H9 A1BZ8 49 A1BZ8 H10 H10 H 0 1 N N N N N N -4.751 7.532 13.182 2.448 -3.760 1.135 H10 A1BZ8 50 A1BZ8 H11 H11 H 0 1 N N N N N N -4.265 6.686 16.071 4.950 -2.578 1.422 H11 A1BZ8 51 A1BZ8 H12 H12 H 0 1 N N N N N N -5.819 6.988 15.222 4.635 -3.980 0.363 H12 A1BZ8 52 A1BZ8 H13 H13 H 0 1 N N N N N N -6.245 2.430 20.059 9.969 -0.322 1.127 H13 A1BZ8 53 A1BZ8 H14 H14 H 0 1 N N N N N N -5.735 6.413 17.110 6.597 -3.740 0.091 H14 A1BZ8 54 A1BZ8 H15 H15 H 0 1 N N N N N N -5.960 -1.584 18.174 8.841 3.882 0.596 H15 A1BZ8 55 A1BZ8 H16 H16 H 0 1 N N N N N N -6.127 0.632 19.323 9.490 1.552 0.900 H16 A1BZ8 56 A1BZ8 H17 H17 H 0 1 N N N N N N -5.055 0.359 14.446 4.943 2.675 -0.717 H17 A1BZ8 57 A1BZ8 H18 H18 H 0 1 N N N N N N 6.639 8.921 18.408 -8.265 -0.248 2.040 H18 A1BZ8 58 A1BZ8 H19 H19 H 0 1 N N N N N N 4.457 9.094 17.194 -6.326 -1.728 1.718 H19 A1BZ8 59 A1BZ8 H20 H20 H 0 1 N N N N N N 3.889 7.348 14.261 -5.042 -3.068 0.155 H20 A1BZ8 60 A1BZ8 H21 H21 H 0 1 N N N N N N 3.115 8.401 15.494 -5.029 -2.680 -1.582 H21 A1BZ8 61 A1BZ8 H22 H22 H 0 1 N N N N N N 1.887 6.661 16.247 -3.751 -1.039 0.507 H22 A1BZ8 62 A1BZ8 H24 H24 H 0 1 N N N N N N 2.061 5.862 13.448 -2.593 -2.766 -1.583 H24 A1BZ8 63 A1BZ8 H25 H25 H 0 1 N N N N N N 1.440 7.482 13.914 -2.606 -3.154 0.154 H25 A1BZ8 64 A1BZ8 H26 H26 H 0 1 N N N N N N -6.323 6.596 19.465 8.838 -4.311 0.889 H26 A1BZ8 65 A1BZ8 H27 H27 H 0 1 N N N N N N -4.674 -3.767 15.923 7.065 6.723 -0.116 H27 A1BZ8 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BZ8 C15 C16 SING N N 1 A1BZ8 C15 C14 SING N N 2 A1BZ8 C15 O2 SING N N 3 A1BZ8 C17 O2 SING N N 4 A1BZ8 C17 C18 SING N N 5 A1BZ8 C16 N2 SING N N 6 A1BZ8 C14 C13 SING N N 7 A1BZ8 C19 C18 SING N N 8 A1BZ8 C19 N3 SING N N 9 A1BZ8 O1 C DOUB N N 10 A1BZ8 N2 C13 SING N N 11 A1BZ8 N2 C7 SING N N 12 A1BZ8 N C7 DOUB Y N 13 A1BZ8 N C5 SING Y N 14 A1BZ8 C20 N3 SING N N 15 A1BZ8 C20 C21 SING N N 16 A1BZ8 C6 C5 DOUB Y N 17 A1BZ8 C6 C1 SING Y N 18 A1BZ8 C C1 SING N N 19 A1BZ8 C O SING N N 20 A1BZ8 C7 C8 SING Y N 21 A1BZ8 C26 C21 DOUB Y N 22 A1BZ8 C26 C25 SING Y N 23 A1BZ8 C5 C4 SING Y N 24 A1BZ8 C21 C22 SING Y N 25 A1BZ8 C1 C2 DOUB Y N 26 A1BZ8 CL C25 SING N N 27 A1BZ8 C25 C24 DOUB Y N 28 A1BZ8 C22 C23 DOUB Y N 29 A1BZ8 C8 C9 DOUB Y N 30 A1BZ8 C8 C12 SING Y N 31 A1BZ8 C4 C12 SING Y N 32 A1BZ8 C4 C3 DOUB Y N 33 A1BZ8 C24 C23 SING Y N 34 A1BZ8 C24 O3 SING N N 35 A1BZ8 C2 C3 SING Y N 36 A1BZ8 C9 C10 SING Y N 37 A1BZ8 C12 C11 DOUB Y N 38 A1BZ8 F C27 SING N N 39 A1BZ8 O3 C27 SING N N 40 A1BZ8 C27 F2 SING N N 41 A1BZ8 C27 F1 SING N N 42 A1BZ8 C10 N1 DOUB Y N 43 A1BZ8 C11 N1 SING Y N 44 A1BZ8 C26 H1 SING N N 45 A1BZ8 C17 H2 SING N N 46 A1BZ8 C17 H3 SING N N 47 A1BZ8 C18 H4 SING N N 48 A1BZ8 C18 H5 SING N N 49 A1BZ8 C16 H6 SING N N 50 A1BZ8 C16 H7 SING N N 51 A1BZ8 C15 H8 SING N N 52 A1BZ8 C14 H9 SING N N 53 A1BZ8 C14 H10 SING N N 54 A1BZ8 C13 H11 SING N N 55 A1BZ8 C13 H12 SING N N 56 A1BZ8 C11 H13 SING N N 57 A1BZ8 C9 H14 SING N N 58 A1BZ8 C2 H15 SING N N 59 A1BZ8 C3 H16 SING N N 60 A1BZ8 C6 H17 SING N N 61 A1BZ8 C23 H18 SING N N 62 A1BZ8 C22 H19 SING N N 63 A1BZ8 C20 H20 SING N N 64 A1BZ8 C20 H21 SING N N 65 A1BZ8 N3 H22 SING N N 66 A1BZ8 C19 H24 SING N N 67 A1BZ8 C19 H25 SING N N 68 A1BZ8 C10 H26 SING N N 69 A1BZ8 O H27 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BZ8 SMILES ACDLabs 14.52 "FC(F)(F)Oc1ccc(cc1Cl)CNCCCOC1CCN(C1)c1nc2cc(ccc2c2cnccc12)C(=O)O" A1BZ8 InChI InChI 1.06 "InChI=1S/C28H26ClF3N4O4/c29-23-12-17(2-5-25(23)40-28(30,31)32)14-33-8-1-11-39-19-7-10-36(16-19)26-21-6-9-34-15-22(21)20-4-3-18(27(37)38)13-24(20)35-26/h2-6,9,12-13,15,19,33H,1,7-8,10-11,14,16H2,(H,37,38)/t19-/m1/s1" A1BZ8 InChIKey InChI 1.06 JNMXVLNAQSLQFN-LJQANCHMSA-N A1BZ8 SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1ccc2c(c1)nc(N3CC[C@H](C3)OCCCNCc4ccc(OC(F)(F)F)c(Cl)c4)c5ccncc25" A1BZ8 SMILES CACTVS 3.385 "OC(=O)c1ccc2c(c1)nc(N3CC[CH](C3)OCCCNCc4ccc(OC(F)(F)F)c(Cl)c4)c5ccncc25" A1BZ8 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(cc1CNCCCO[C@@H]2CCN(C2)c3c4ccncc4c5ccc(cc5n3)C(=O)O)Cl)OC(F)(F)F" A1BZ8 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(c(cc1CNCCCOC2CCN(C2)c3c4ccncc4c5ccc(cc5n3)C(=O)O)Cl)OC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BZ8 "SYSTEMATIC NAME" ACDLabs 14.52 "5-{(3R)-3-[3-({[3-chloro-4-(trifluoromethoxy)phenyl]methyl}amino)propoxy]pyrrolidin-1-yl}benzo[c][2,6]naphthyridine-8-carboxylic acid" A1BZ8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-[(3~{R})-3-[3-[[3-chloranyl-4-(trifluoromethyloxy)phenyl]methylamino]propoxy]pyrrolidin-1-yl]benzo[c][2,6]naphthyridine-8-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BZ8 "Create component" 2025-03-12 RCSB A1BZ8 "Initial release" 2026-01-14 RCSB #