data_A1BZY # _chem_comp.id A1BZY _chem_comp.name "5-({2-[(4-{[(2-chloro[1,1'-biphenyl]-4-yl)methyl]amino}butyl)amino]ethyl}amino)-N-(methanesulfonyl)benzo[c][2,6]naphthyridine-8-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H35 Cl N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-12 _chem_comp.pdbx_modified_date 2026-01-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 631.187 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1BZY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7I84 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1BZY C1 C1 C 0 1 N N N N N N -5.270 -2.477 15.686 8.804 1.985 -0.034 C1 A1BZY 1 A1BZY C2 C2 C 0 1 Y N N N N N -5.571 -1.149 16.310 8.297 0.596 -0.046 C2 A1BZY 2 A1BZY C3 C3 C 0 1 Y N N N N N -5.844 -0.995 17.669 9.200 -0.475 -0.078 C3 A1BZY 3 A1BZY N1 N1 N 0 1 Y N N N N N -5.370 2.326 15.234 5.124 -1.187 -0.008 N1 A1BZY 4 A1BZY C5 C4 C 0 1 Y N N N N N -5.808 1.418 17.444 7.376 -2.022 -0.070 C5 A1BZY 5 A1BZY C6 C5 C 0 1 Y N N N N N -5.562 1.265 16.073 6.449 -0.955 -0.032 C6 A1BZY 6 A1BZY C11 C6 C 0 1 Y N N N N N -5.994 5.337 18.956 5.843 -5.918 -0.115 C11 A1BZY 7 A1BZY C12 C7 C 0 1 Y N N N N N -6.090 3.082 19.323 7.686 -4.518 -0.114 C12 A1BZY 8 A1BZY C13 C8 C 0 1 Y N N N N N -5.862 2.774 17.959 6.863 -3.395 -0.082 C13 A1BZY 9 A1BZY C16 C9 C 0 1 N N N N N N -1.172 6.228 13.608 -1.387 -1.002 0.144 C16 A1BZY 10 A1BZY C17 C10 C 0 1 N N N N N N -0.114 6.948 14.411 -2.258 0.255 0.198 C17 A1BZY 11 A1BZY C10 C11 C 0 1 Y N N N N N -5.770 5.181 17.617 4.957 -4.875 -0.085 C10 A1BZY 12 A1BZY C14 C12 C 0 1 N N N N N N -4.467 5.779 14.808 2.362 -1.358 0.050 C14 A1BZY 13 A1BZY C15 C13 C 0 1 N N N N N N -3.602 5.948 13.571 0.898 -1.800 0.071 C15 A1BZY 14 A1BZY C18 C14 C 0 1 N N N N N N 1.218 6.255 14.590 -3.734 -0.147 0.221 C18 A1BZY 15 A1BZY C19 C15 C 0 1 N N N N N N 1.977 6.987 15.674 -4.604 1.110 0.274 C19 A1BZY 16 A1BZY C20 C16 C 0 1 N N N N N N 4.091 7.375 16.794 -6.889 1.908 0.348 C20 A1BZY 17 A1BZY C21 C17 C 0 1 Y N N N N N 5.529 6.969 17.003 -8.332 1.473 0.369 C21 A1BZY 18 A1BZY C22 C18 C 0 1 Y N N N N N 6.480 7.901 17.405 -8.964 1.241 1.577 C22 A1BZY 19 A1BZY C23 C19 C 0 1 Y N N N N N 7.792 7.527 17.658 -10.285 0.843 1.603 C23 A1BZY 20 A1BZY C24 C20 C 0 1 Y N N N N N 8.198 6.199 17.510 -10.983 0.675 0.408 C24 A1BZY 21 A1BZY C25 C21 C 0 1 Y N N N N N 7.237 5.275 17.091 -10.341 0.909 -0.807 C25 A1BZY 22 A1BZY C26 C22 C 0 1 Y N N N N N 5.929 5.646 16.843 -9.020 1.312 -0.820 C26 A1BZY 23 A1BZY C27 C23 C 0 1 Y N N N N N 9.608 5.818 17.800 -12.404 0.246 0.430 C27 A1BZY 24 A1BZY C28 C24 C 0 1 Y N N N N N 10.099 5.826 19.108 -13.357 0.949 -0.304 C28 A1BZY 25 A1BZY C29 C25 C 0 1 Y N N N N N 11.402 5.435 19.377 -14.677 0.547 -0.280 C29 A1BZY 26 A1BZY C30 C26 C 0 1 Y N N N N N 12.235 5.032 18.348 -15.054 -0.553 0.470 C30 A1BZY 27 A1BZY C4 C27 C 0 1 Y N N N N N -5.961 0.250 18.218 8.748 -1.760 -0.089 C4 A1BZY 28 A1BZY C7 C28 C 0 1 Y N N N N N -5.474 -0.032 15.518 6.929 0.361 -0.021 C7 A1BZY 29 A1BZY C8 C29 C 0 1 Y N N N N N -5.430 3.583 15.664 4.601 -2.389 -0.029 C8 A1BZY 30 A1BZY C9 C30 C 0 1 Y N N N N N -5.674 3.871 17.072 5.459 -3.573 -0.061 C9 A1BZY 31 A1BZY N2 N2 N 0 1 Y N N N N N -6.147 4.318 19.818 7.150 -5.721 -0.124 N2 A1BZY 32 A1BZY N3 N3 N 0 1 N N N N N N -5.169 4.520 14.678 3.228 -2.539 -0.002 N3 A1BZY 33 A1BZY N4 N4 N 0 1 N N N N N N -2.480 6.852 13.809 0.030 -0.616 0.123 N4 A1BZY 34 A1BZY N5 N5 N 0 1 N N N N N N 3.388 6.610 15.757 -6.021 0.724 0.296 N5 A1BZY 35 A1BZY O1 O1 O 0 1 N N N N N N -4.335 -5.436 15.019 9.988 4.415 -1.089 O1 A1BZY 36 A1BZY O2 O2 O 0 1 N N N N N N -5.323 -2.647 14.471 8.023 2.916 -0.001 O2 A1BZY 37 A1BZY CL CL1 CL 0 0 N N N N N N 7.673 3.614 16.860 -11.202 0.701 -2.300 CL A1BZY 38 A1BZY C32 C31 C 0 1 Y N N N N N 10.462 5.405 16.773 -12.788 -0.864 1.179 C32 A1BZY 39 A1BZY C31 C32 C 0 1 Y N N N N N 11.762 5.009 17.050 -14.112 -1.254 1.201 C31 A1BZY 40 A1BZY N N6 N 0 1 N N N N N N -4.911 -3.499 16.543 10.131 2.218 -0.053 N A1BZY 41 A1BZY S S1 S 0 1 N N N N N N -5.080 -5.118 16.192 10.699 3.773 -0.039 S A1BZY 42 A1BZY O O3 O 0 1 N N N N N N -6.485 -5.385 16.197 12.111 3.631 -0.091 O A1BZY 43 A1BZY C C33 C 0 1 N N N N N N -4.359 -5.942 17.550 10.184 4.429 1.572 C A1BZY 44 A1BZY H1 H1 H 0 1 N N N N N N -5.964 -1.868 18.293 10.263 -0.280 -0.094 H1 A1BZY 45 A1BZY H2 H2 H 0 1 N N N N N N -6.052 6.343 19.346 5.464 -6.929 -0.124 H2 A1BZY 46 A1BZY H3 H3 H 0 1 N N N N N N -6.227 2.259 20.009 8.760 -4.402 -0.131 H3 A1BZY 47 A1BZY H4 H4 H 0 1 N N N N N N -1.219 5.177 13.930 -1.583 -1.617 1.022 H4 A1BZY 48 A1BZY H5 H5 H 0 1 N N N N N N -0.910 6.273 12.541 -1.623 -1.569 -0.757 H5 A1BZY 49 A1BZY H6 H6 H 0 1 N N N N N N 0.079 7.910 13.914 -2.022 0.822 1.099 H6 A1BZY 50 A1BZY H7 H7 H 0 1 N N N N N N -0.528 7.130 15.414 -2.062 0.871 -0.680 H7 A1BZY 51 A1BZY H8 H8 H 0 1 N N N N N N -5.667 6.045 16.978 3.892 -5.056 -0.078 H8 A1BZY 52 A1BZY H9 H9 H 0 1 N N N N N N -3.836 5.766 15.709 2.542 -0.738 -0.828 H9 A1BZY 53 A1BZY H10 H10 H 0 1 N N N N N N -5.189 6.606 14.878 2.582 -0.786 0.951 H10 A1BZY 54 A1BZY H11 H11 H 0 1 N N N N N N -4.221 6.356 12.758 0.678 -2.372 -0.831 H11 A1BZY 55 A1BZY H12 H12 H 0 1 N N N N N N -3.209 4.964 13.275 0.718 -2.421 0.948 H12 A1BZY 56 A1BZY H13 H13 H 0 1 N N N N N N 1.058 5.208 14.887 -3.970 -0.714 -0.680 H13 A1BZY 57 A1BZY H14 H14 H 0 1 N N N N N N 1.786 6.287 13.649 -3.929 -0.762 1.099 H14 A1BZY 58 A1BZY H15 H15 H 0 1 N N N N N N 1.917 8.067 15.472 -4.368 1.677 1.175 H15 A1BZY 59 A1BZY H16 H16 H 0 1 N N N N N N 1.501 6.767 16.641 -4.409 1.725 -0.604 H16 A1BZY 60 A1BZY H17 H17 H 0 1 N N N N N N 4.072 8.438 16.510 -6.709 2.529 -0.530 H17 A1BZY 61 A1BZY H18 H18 H 0 1 N N N N N N 3.554 7.240 17.744 -6.669 2.480 1.249 H18 A1BZY 62 A1BZY H19 H19 H 0 1 N N N N N N 6.192 8.935 17.522 -8.423 1.372 2.502 H19 A1BZY 63 A1BZY H20 H20 H 0 1 N N N N N N 8.508 8.272 17.973 -10.778 0.663 2.547 H20 A1BZY 64 A1BZY H21 H21 H 0 1 N N N N N N 5.213 4.904 16.523 -8.522 1.498 -1.760 H21 A1BZY 65 A1BZY H22 H22 H 0 1 N N N N N N 9.457 6.140 19.918 -13.064 1.808 -0.889 H22 A1BZY 66 A1BZY H23 H23 H 0 1 N N N N N N 11.768 5.445 20.393 -15.417 1.091 -0.848 H23 A1BZY 67 A1BZY H24 H24 H 0 1 N N N N N N 13.252 4.736 18.559 -16.088 -0.864 0.486 H24 A1BZY 68 A1BZY H25 H25 H 0 1 N N N N N N -6.176 0.342 19.272 9.451 -2.579 -0.114 H25 A1BZY 69 A1BZY H26 H26 H 0 1 N N N N N N -5.328 -0.146 14.454 6.238 1.190 0.008 H26 A1BZY 70 A1BZY H27 H27 H 0 1 N N N N N N -6.069 4.768 14.320 2.837 -3.427 -0.018 H27 A1BZY 71 A1BZY H28 H28 H 0 1 N N N N N N -2.560 7.627 13.182 0.258 -0.034 0.915 H28 A1BZY 72 A1BZY H30 H30 H 0 1 N N N N N N 3.452 5.636 15.973 -6.250 0.142 -0.497 H30 A1BZY 73 A1BZY H32 H32 H 0 1 N N N N N N 10.106 5.394 15.754 -12.053 -1.412 1.750 H32 A1BZY 74 A1BZY H33 H33 H 0 1 N N N N N N 12.407 4.681 16.248 -14.411 -2.114 1.781 H33 A1BZY 75 A1BZY H34 H34 H 0 1 N N N N N N -4.525 -3.251 17.431 10.753 1.474 -0.075 H34 A1BZY 76 A1BZY H35 H35 H 0 1 N N N N N N -4.923 -5.706 18.464 9.097 4.392 1.649 H35 A1BZY 77 A1BZY H36 H36 H 0 1 N N N N N N -4.382 -7.028 17.374 10.625 3.827 2.367 H36 A1BZY 78 A1BZY H37 H37 H 0 1 N N N N N N -3.316 -5.612 17.668 10.520 5.461 1.669 H37 A1BZY 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1BZY C15 N4 SING N N 1 A1BZY C15 C14 SING N N 2 A1BZY C16 N4 SING N N 3 A1BZY C16 C17 SING N N 4 A1BZY C17 C18 SING N N 5 A1BZY O2 C1 DOUB N N 6 A1BZY C18 C19 SING N N 7 A1BZY N3 C14 SING N N 8 A1BZY N3 C8 SING N N 9 A1BZY O1 S DOUB N N 10 A1BZY N1 C8 DOUB Y N 11 A1BZY N1 C6 SING Y N 12 A1BZY C7 C6 DOUB Y N 13 A1BZY C7 C2 SING Y N 14 A1BZY C8 C9 SING Y N 15 A1BZY C19 N5 SING N N 16 A1BZY C1 C2 SING N N 17 A1BZY C1 N SING N N 18 A1BZY N5 C20 SING N N 19 A1BZY C6 C5 SING Y N 20 A1BZY S O DOUB N N 21 A1BZY S N SING N N 22 A1BZY S C SING N N 23 A1BZY C2 C3 DOUB Y N 24 A1BZY C32 C31 DOUB Y N 25 A1BZY C32 C27 SING Y N 26 A1BZY C20 C21 SING N N 27 A1BZY C26 C21 DOUB Y N 28 A1BZY C26 C25 SING Y N 29 A1BZY CL C25 SING N N 30 A1BZY C21 C22 SING Y N 31 A1BZY C31 C30 SING Y N 32 A1BZY C9 C10 DOUB Y N 33 A1BZY C9 C13 SING Y N 34 A1BZY C25 C24 DOUB Y N 35 A1BZY C22 C23 DOUB Y N 36 A1BZY C5 C13 SING Y N 37 A1BZY C5 C4 DOUB Y N 38 A1BZY C24 C23 SING Y N 39 A1BZY C24 C27 SING N N 40 A1BZY C10 C11 SING Y N 41 A1BZY C3 C4 SING Y N 42 A1BZY C27 C28 DOUB Y N 43 A1BZY C13 C12 DOUB Y N 44 A1BZY C30 C29 DOUB Y N 45 A1BZY C11 N2 DOUB Y N 46 A1BZY C28 C29 SING Y N 47 A1BZY C12 N2 SING Y N 48 A1BZY C3 H1 SING N N 49 A1BZY C11 H2 SING N N 50 A1BZY C12 H3 SING N N 51 A1BZY C16 H4 SING N N 52 A1BZY C16 H5 SING N N 53 A1BZY C17 H6 SING N N 54 A1BZY C17 H7 SING N N 55 A1BZY C10 H8 SING N N 56 A1BZY C14 H9 SING N N 57 A1BZY C14 H10 SING N N 58 A1BZY C15 H11 SING N N 59 A1BZY C15 H12 SING N N 60 A1BZY C18 H13 SING N N 61 A1BZY C18 H14 SING N N 62 A1BZY C19 H15 SING N N 63 A1BZY C19 H16 SING N N 64 A1BZY C20 H17 SING N N 65 A1BZY C20 H18 SING N N 66 A1BZY C22 H19 SING N N 67 A1BZY C23 H20 SING N N 68 A1BZY C26 H21 SING N N 69 A1BZY C28 H22 SING N N 70 A1BZY C29 H23 SING N N 71 A1BZY C30 H24 SING N N 72 A1BZY C4 H25 SING N N 73 A1BZY C7 H26 SING N N 74 A1BZY N3 H27 SING N N 75 A1BZY N4 H28 SING N N 76 A1BZY N5 H30 SING N N 77 A1BZY C32 H32 SING N N 78 A1BZY C31 H33 SING N N 79 A1BZY N H34 SING N N 80 A1BZY C H35 SING N N 81 A1BZY C H36 SING N N 82 A1BZY C H37 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1BZY SMILES ACDLabs 14.52 "CS(=O)(=O)NC(=O)c1cc2nc(NCCNCCCCNCc3ccc(c4ccccc4)c(Cl)c3)c3ccncc3c2cc1" A1BZY InChI InChI 1.06 "InChI=1S/C33H35ClN6O3S/c1-44(42,43)40-33(41)25-10-12-27-29-22-37-16-13-28(29)32(39-31(27)20-25)38-18-17-35-14-5-6-15-36-21-23-9-11-26(30(34)19-23)24-7-3-2-4-8-24/h2-4,7-13,16,19-20,22,35-36H,5-6,14-15,17-18,21H2,1H3,(H,38,39)(H,40,41)" A1BZY InChIKey InChI 1.06 XSHLGSCIJUJRJF-UHFFFAOYSA-N A1BZY SMILES_CANONICAL CACTVS 3.385 "C[S](=O)(=O)NC(=O)c1ccc2c(c1)nc(NCCNCCCCNCc3ccc(c(Cl)c3)c4ccccc4)c5ccncc25" A1BZY SMILES CACTVS 3.385 "C[S](=O)(=O)NC(=O)c1ccc2c(c1)nc(NCCNCCCCNCc3ccc(c(Cl)c3)c4ccccc4)c5ccncc25" A1BZY SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CS(=O)(=O)NC(=O)c1ccc2c(c1)nc(c3c2cncc3)NCCNCCCCNCc4ccc(c(c4)Cl)c5ccccc5" A1BZY SMILES "OpenEye OEToolkits" 3.1.0.0 "CS(=O)(=O)NC(=O)c1ccc2c(c1)nc(c3c2cncc3)NCCNCCCCNCc4ccc(c(c4)Cl)c5ccccc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1BZY "SYSTEMATIC NAME" ACDLabs 14.52 "5-({2-[(4-{[(2-chloro[1,1'-biphenyl]-4-yl)methyl]amino}butyl)amino]ethyl}amino)-N-(methanesulfonyl)benzo[c][2,6]naphthyridine-8-carboxamide" A1BZY "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "5-[2-[4-[(3-chloranyl-4-phenyl-phenyl)methylamino]butylamino]ethylamino]-~{N}-methylsulfonyl-benzo[c][2,6]naphthyridine-8-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1BZY "Create component" 2025-03-12 RCSB A1BZY "Initial release" 2026-01-14 RCSB #