data_A1C04 # _chem_comp.id A1C04 _chem_comp.name "1-[(1s,4s)-4-(methylamino)cyclohexyl]-3-{[4-(trifluoromethyl)pyridin-2-yl]oxy}-1H-pyrazolo[3,4-d]pyrimidin-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H20 F3 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-13 _chem_comp.pdbx_modified_date 2026-07-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 407.393 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1C04 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Z5L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1C04 N1 N1 N 0 1 N N N N N N -2.020 -17.697 -27.625 3.126 3.072 -1.959 N1 A1C04 1 A1C04 N3 N2 N 0 1 Y N N N N N 0.296 -21.210 -29.925 0.840 -0.117 0.899 N3 A1C04 2 A1C04 C4 C1 C 0 1 N N N N N N -1.834 -19.172 -29.980 2.372 2.161 1.646 C4 A1C04 3 A1C04 C5 C2 C 0 1 N N N N N N -2.067 -20.633 -29.625 3.085 0.807 1.661 C5 A1C04 4 A1C04 C6 C3 C 0 1 Y N N N N N 0.884 -22.304 -30.183 0.383 -1.178 0.288 C6 A1C04 5 A1C04 C7 C4 C 0 1 Y N N N N N 2.980 -22.530 -31.506 -1.834 -0.473 0.252 C7 A1C04 6 A1C04 C8 C5 C 0 1 Y N N N N N 4.359 -22.275 -31.550 -3.154 -0.654 -0.143 C8 A1C04 7 A1C04 C10 C6 C 0 1 N N N N N N 6.572 -22.194 -32.832 -5.523 0.177 -0.277 C10 A1C04 8 A1C04 C13 C7 C 0 1 Y N N N N N 0.060 -23.510 -30.282 1.525 -2.034 -0.015 C13 A1C04 9 A1C04 C15 C8 C 0 1 Y N N N N N -2.241 -25.042 -30.318 3.967 -3.111 -0.270 C15 A1C04 10 A1C04 C17 C9 C 0 1 N N N N N N -2.411 -20.749 -28.138 4.402 0.915 0.890 C17 A1C04 11 A1C04 C1 C10 C 0 1 N N N N N N -2.225 -17.170 -26.277 2.935 4.524 -2.066 C1 A1C04 12 A1C04 C11 C11 C 0 1 Y N N N N N 4.362 -22.889 -33.824 -3.654 1.475 0.801 C11 A1C04 13 A1C04 C12 C12 C 0 1 Y N N N N N 3.000 -23.142 -33.736 -2.327 1.588 1.163 C12 A1C04 14 A1C04 C14 C13 C 0 1 Y N N N N N 0.144 -24.860 -30.501 1.695 -3.280 -0.642 C14 A1C04 15 A1C04 C16 C14 C 0 1 Y N N N N N -1.274 -22.960 -30.059 2.665 -1.367 0.476 C16 A1C04 16 A1C04 C18 C15 C 0 1 N N N N N N -3.427 -19.721 -27.589 4.115 1.324 -0.556 C18 A1C04 17 A1C04 C2 C16 C 0 1 N N N N N N -3.240 -18.298 -28.121 3.402 2.679 -0.570 C2 A1C04 18 A1C04 C3 C17 C 0 1 N N N N N N -3.120 -18.398 -29.631 2.085 2.570 0.200 C3 A1C04 19 A1C04 C9 C18 C 0 1 Y N N N N N 5.069 -22.459 -32.727 -4.082 0.335 0.134 C9 A1C04 20 A1C04 F1 F1 F 0 1 N N N N N N 6.762 -21.075 -33.570 -6.236 -0.447 0.753 F1 A1C04 21 A1C04 F2 F2 F 0 1 N N N N N N 7.097 -21.971 -31.590 -6.076 1.437 -0.530 F2 A1C04 22 A1C04 F3 F3 F 0 1 N N N N N N 7.228 -23.256 -33.422 -5.595 -0.605 -1.434 F3 A1C04 23 A1C04 N2 N3 N 0 1 Y N N N N N -0.942 -21.579 -29.865 2.230 -0.201 1.029 N2 A1C04 24 A1C04 N4 N4 N 0 1 Y N N N N N 2.328 -22.958 -32.596 -1.465 0.628 0.885 N4 A1C04 25 A1C04 N5 N5 N 0 1 N N N N N N 1.404 -25.539 -30.761 0.611 -3.976 -1.141 N5 A1C04 26 A1C04 N6 N6 N 0 1 Y N N N N N -0.990 -25.598 -30.522 2.926 -3.772 -0.744 N6 A1C04 27 A1C04 N7 N7 N 0 1 Y N N N N N -2.357 -23.702 -30.086 3.857 -1.944 0.325 N7 A1C04 28 A1C04 O1 O1 O 0 1 N N N N N N 2.301 -22.331 -30.276 -0.917 -1.438 -0.010 O1 A1C04 29 A1C04 H4 H1 H 0 1 N N N N N N -1.749 -16.951 -28.233 2.328 2.574 -2.323 H21 A1C04 30 A1C04 H8 H3 H 0 1 N N N N N N -1.619 -19.077 -31.054 1.434 2.084 2.195 H8 A1C04 31 A1C04 H9 H4 H 0 1 N N N N N N -0.988 -18.775 -29.400 3.008 2.911 2.117 H9 A1C04 32 A1C04 H10 H5 H 0 1 N N N N N N -2.938 -20.983 -30.198 3.289 0.515 2.691 H10 A1C04 33 A1C04 H11 H6 H 0 1 N N N N N N 4.870 -21.933 -30.662 -3.452 -1.554 -0.661 H11 A1C04 34 A1C04 H16 H7 H 0 1 N N N N N N -3.122 -25.666 -30.342 4.949 -3.548 -0.374 H16 A1C04 35 A1C04 H18 H8 H 0 1 N N N N N N -1.477 -20.635 -27.568 5.038 1.665 1.361 H18 A1C04 36 A1C04 H17 H9 H 0 1 N N N N N N -2.825 -21.754 -27.967 4.909 -0.049 0.901 H17 A1C04 37 A1C04 H3 H10 H 0 1 N N N N N N -1.291 -16.717 -25.914 2.094 4.827 -1.444 H3 A1C04 38 A1C04 H1 H11 H 0 1 N N N N N N -3.018 -16.408 -26.298 3.838 5.035 -1.731 H1 A1C04 39 A1C04 H2 H12 H 0 1 N N N N N N -2.521 -17.989 -25.605 2.733 4.788 -3.105 H2 A1C04 40 A1C04 H12 H13 H 0 1 N N N N N N 4.872 -23.032 -34.765 -4.352 2.266 1.032 H12 A1C04 41 A1C04 H13 H14 H 0 1 N N N N N N 2.471 -23.496 -34.609 -1.989 2.474 1.681 H13 A1C04 42 A1C04 H19 H15 H 0 1 N N N N N N -4.438 -20.059 -27.860 5.053 1.402 -1.105 H19 A1C04 43 A1C04 H20 H16 H 0 1 N N N N N N -3.330 -19.694 -26.494 3.479 0.575 -1.026 H20 A1C04 44 A1C04 H5 H17 H 0 1 N N N N N N -4.114 -17.685 -27.856 4.038 3.429 -0.100 H5 A1C04 45 A1C04 H6 H18 H 0 1 N N N N N N -3.993 -18.931 -30.036 1.449 1.820 -0.270 H6 A1C04 46 A1C04 H7 H19 H 0 1 N N N N N N -3.073 -17.388 -30.065 1.578 3.535 0.190 H7 A1C04 47 A1C04 H15 H20 H 0 1 N N N N N N 1.232 -26.510 -30.927 -0.282 -3.605 -1.060 H15 A1C04 48 A1C04 H14 H21 H 0 1 N N N N N N 1.840 -25.136 -31.566 0.743 -4.835 -1.572 H14 A1C04 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1C04 C1 N1 SING N N 1 A1C04 C10 C9 SING N N 2 A1C04 C10 F1 SING N N 3 A1C04 C10 F2 SING N N 4 A1C04 C10 F3 SING N N 5 A1C04 C11 C12 DOUB Y N 6 A1C04 C11 C9 SING Y N 7 A1C04 C12 N4 SING Y N 8 A1C04 C13 C14 DOUB Y N 9 A1C04 C13 C16 SING Y N 10 A1C04 C13 C6 SING Y N 11 A1C04 C14 N5 SING N N 12 A1C04 C14 N6 SING Y N 13 A1C04 C15 N6 DOUB Y N 14 A1C04 C15 N7 SING Y N 15 A1C04 C16 N2 SING Y N 16 A1C04 C16 N7 DOUB Y N 17 A1C04 C17 C18 SING N N 18 A1C04 C17 C5 SING N N 19 A1C04 C18 C2 SING N N 20 A1C04 C2 C3 SING N N 21 A1C04 C2 N1 SING N N 22 A1C04 C3 C4 SING N N 23 A1C04 C4 C5 SING N N 24 A1C04 C5 N2 SING N N 25 A1C04 C6 N3 DOUB Y N 26 A1C04 C6 O1 SING N N 27 A1C04 C7 C8 SING Y N 28 A1C04 C7 N4 DOUB Y N 29 A1C04 C7 O1 SING N N 30 A1C04 C8 C9 DOUB Y N 31 A1C04 N2 N3 SING Y N 32 A1C04 N1 H4 SING N N 33 A1C04 C4 H8 SING N N 34 A1C04 C4 H9 SING N N 35 A1C04 C5 H10 SING N N 36 A1C04 C8 H11 SING N N 37 A1C04 C15 H16 SING N N 38 A1C04 C17 H18 SING N N 39 A1C04 C17 H17 SING N N 40 A1C04 C1 H3 SING N N 41 A1C04 C1 H1 SING N N 42 A1C04 C1 H2 SING N N 43 A1C04 C11 H12 SING N N 44 A1C04 C12 H13 SING N N 45 A1C04 C18 H19 SING N N 46 A1C04 C18 H20 SING N N 47 A1C04 C2 H5 SING N N 48 A1C04 C3 H6 SING N N 49 A1C04 C3 H7 SING N N 50 A1C04 N5 H15 SING N N 51 A1C04 N5 H14 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1C04 SMILES ACDLabs 14.52 "FC(F)(F)c1cc(ncc1)Oc1nn(c2ncnc(N)c21)C1CCC(NC)CC1" A1C04 InChI InChI 1.06 "InChI=1S/C18H20F3N7O/c1-23-11-2-4-12(5-3-11)28-16-14(15(22)25-9-26-16)17(27-28)29-13-8-10(6-7-24-13)18(19,20)21/h6-9,11-12,23H,2-5H2,1H3,(H2,22,25,26)/t11-,12+" A1C04 InChIKey InChI 1.06 BXBODOQIDMFHNU-TXEJJXNPSA-N A1C04 SMILES_CANONICAL CACTVS 3.385 "CN[C@@H]1CC[C@@H](CC1)n2nc(Oc3cc(ccn3)C(F)(F)F)c4c(N)ncnc24" A1C04 SMILES CACTVS 3.385 "CN[CH]1CC[CH](CC1)n2nc(Oc3cc(ccn3)C(F)(F)F)c4c(N)ncnc24" A1C04 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CNC1CCC(CC1)n2c3c(c(ncn3)N)c(n2)Oc4cc(ccn4)C(F)(F)F" A1C04 SMILES "OpenEye OEToolkits" 3.1.0.0 "CNC1CCC(CC1)n2c3c(c(ncn3)N)c(n2)Oc4cc(ccn4)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1C04 "SYSTEMATIC NAME" ACDLabs 14.52 "1-[(1s,4s)-4-(methylamino)cyclohexyl]-3-{[4-(trifluoromethyl)pyridin-2-yl]oxy}-1H-pyrazolo[3,4-d]pyrimidin-4-amine" A1C04 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-[4-(methylamino)cyclohexyl]-3-[4-(trifluoromethyl)pyridin-2-yl]oxy-pyrazolo[3,4-d]pyrimidin-4-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1C04 "Create component" 2025-11-13 RCSB A1C04 "Modify atom id" 2025-11-13 RCSB A1C04 "Initial release" 2026-08-05 RCSB #