data_A1C09 # _chem_comp.id A1C09 _chem_comp.name "methyl 4-{[(2E)-2-{[(2S)-3-amino-2-{1-[(1R)-1-(naphthalen-1-yl)ethyl]piperidin-4-yl}propanoyl]imino}acetyl]amino}butanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H36 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "methyl (2E)-4-{[(2E)-2-{[(2S)-3-amino-2-{1-[(1R)-1-(naphthalen-1-yl)ethyl]piperidin-4-yl}propanoyl]imino}acetyl]amino}but-2-enoate bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-18 _chem_comp.pdbx_modified_date 2026-01-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.599 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1C09 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Z6B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1C09 C10 C1 C 0 1 N N N N N N 11.500 14.555 -22.475 -3.456 -0.265 0.199 C10 A1C09 1 A1C09 N12 N1 N 0 1 N N N N N N 12.914 14.123 -20.358 -5.897 -0.062 0.034 N12 A1C09 2 A1C09 C13 C2 C 0 1 N N N N N N 13.714 13.240 -19.528 -7.222 -0.628 -0.232 C13 A1C09 3 A1C09 C15 C3 C 0 1 N N N N N N 15.393 15.098 -19.820 -9.669 -0.135 -0.323 C15 A1C09 4 A1C09 C22 C4 C 0 1 N N N N N N 7.674 14.389 -25.631 -0.053 -2.532 1.195 C22 A1C09 5 A1C09 C24 C5 C 0 1 N N N N N N 5.660 15.120 -23.893 2.542 -1.409 0.422 C24 A1C09 6 A1C09 C26 C6 C 0 1 Y N N N N N 2.680 17.082 -21.629 6.259 0.426 -0.541 C26 A1C09 7 A1C09 C28 C7 C 0 1 Y N N N N N 3.691 19.282 -22.113 7.764 1.684 0.927 C28 A1C09 8 A1C09 C01 C8 C 0 1 N N N N N N 3.786 16.044 -19.509 5.052 2.536 -1.033 C01 A1C09 9 A1C09 C02 C9 C 0 1 N N R N N N 4.074 16.592 -20.991 5.099 1.298 -0.135 C02 A1C09 10 A1C09 C04 C10 C 0 1 N N N N N N 5.985 15.532 -21.136 2.682 1.428 -0.143 C04 A1C09 11 A1C09 C05 C11 C 0 1 N N N N N N 6.921 14.675 -21.986 1.404 0.639 -0.437 C05 A1C09 12 A1C09 C06 C12 C 0 1 N N N N N N 6.969 15.161 -23.324 1.294 -0.530 0.545 C06 A1C09 13 A1C09 C07 C13 C 0 1 N N S N N N 7.963 14.315 -24.131 0.051 -1.359 0.217 C07 A1C09 14 A1C09 C08 C14 C 0 1 N N N N N N 9.404 14.748 -23.843 -1.176 -0.493 0.339 C08 A1C09 15 A1C09 C11 C15 C 0 1 N N N N N N 12.348 13.634 -21.602 -4.800 -0.839 -0.070 C11 A1C09 16 A1C09 C14 C16 C 0 1 N N N N N N 15.195 13.597 -19.626 -8.286 0.455 -0.046 C14 A1C09 17 A1C09 C16 C17 C 0 1 N N N N N N 16.691 15.450 -20.541 -10.717 0.932 -0.140 C16 A1C09 18 A1C09 C18 C18 C 0 1 N N N N N N 16.963 17.781 -20.367 -12.967 1.717 -0.137 C18 A1C09 19 A1C09 C25 C19 C 0 1 N N N N N N 4.684 15.976 -23.080 3.787 -0.561 0.692 C25 A1C09 20 A1C09 C27 C20 C 0 1 Y N N N N N 2.566 18.408 -22.149 7.536 0.651 0.001 C27 A1C09 21 A1C09 C29 C21 C 0 1 Y N N N N N 3.580 20.570 -22.626 9.014 1.872 1.431 C29 A1C09 22 A1C09 C30 C22 C 0 1 Y N N N N N 2.372 21.004 -23.178 10.075 1.055 1.043 C30 A1C09 23 A1C09 C31 C23 C 0 1 Y N N N N N 1.275 20.152 -23.216 9.891 0.046 0.149 C31 A1C09 24 A1C09 C32 C24 C 0 1 Y N N N N N 1.387 18.833 -22.690 8.614 -0.179 -0.394 C32 A1C09 25 A1C09 C33 C25 C 0 1 Y N N N N N 0.262 17.961 -22.729 8.386 -1.212 -1.319 C33 A1C09 26 A1C09 C34 C26 C 0 1 Y N N N N N 0.370 16.673 -22.216 7.136 -1.401 -1.822 C34 A1C09 27 A1C09 C35 C27 C 0 1 Y N N N N N 1.575 16.235 -21.661 6.074 -0.587 -1.431 C35 A1C09 28 A1C09 N03 N2 N 0 1 N N N N N N 4.672 15.685 -21.676 3.846 0.544 -0.275 N03 A1C09 29 A1C09 N09 N3 N 0 1 N N N N N N 10.136 14.142 -22.745 -2.395 -1.013 0.094 N09 A1C09 30 A1C09 N23 N4 N 0 1 N N N N N N 8.919 14.403 -26.377 -1.178 -3.394 0.807 N23 A1C09 31 A1C09 O17 O1 O 0 1 N N N N N N 17.482 16.510 -20.083 -12.013 0.640 -0.332 O17 A1C09 32 A1C09 O19 O2 O 0 1 N N N N N N 17.025 14.826 -21.489 -10.391 2.050 0.180 O19 A1C09 33 A1C09 O20 O3 O 0 1 N N N N N N 12.541 12.516 -21.945 -4.909 -2.006 -0.383 O20 A1C09 34 A1C09 O21 O4 O 0 1 N N N N N N 9.931 15.573 -24.514 -1.067 0.672 0.657 O21 A1C09 35 A1C09 H1 H1 H 0 1 N N N N N N 11.899 15.476 -22.875 -3.359 0.774 0.478 H1 A1C09 36 A1C09 H2 H2 H 0 1 N N N N N N 12.753 15.068 -20.073 -5.809 0.871 0.284 H2 A1C09 37 A1C09 H3 H3 H 0 1 N N N N N N 13.389 13.336 -18.482 -7.259 -1.002 -1.256 H3 A1C09 38 A1C09 H4 H4 H 0 1 N N N N N N 13.570 12.202 -19.863 -7.412 -1.448 0.461 H4 A1C09 39 A1C09 H5 H5 H 0 1 N N N N N N 15.402 15.579 -18.831 -9.707 -0.509 -1.347 H5 A1C09 40 A1C09 H6 H6 H 0 1 N N N N N N 14.550 15.488 -20.410 -9.860 -0.955 0.370 H6 A1C09 41 A1C09 H7 H7 H 0 1 N N N N N N 7.109 15.308 -25.848 0.872 -3.108 1.171 H7 A1C09 42 A1C09 H8 H8 H 0 1 N N N N N N 7.080 13.513 -25.931 -0.218 -2.151 2.203 H8 A1C09 43 A1C09 H9 H9 H 0 1 N N N N N N 5.703 15.503 -24.923 2.490 -2.220 1.149 H9 A1C09 44 A1C09 H10 H10 H 0 1 N N N N N N 5.304 14.079 -23.903 2.596 -1.825 -0.584 H10 A1C09 45 A1C09 H11 H11 H 0 1 N N N N N N 4.626 18.946 -21.689 6.952 2.325 1.236 H11 A1C09 46 A1C09 H12 H12 H 0 1 N N N N N N 3.274 16.821 -18.923 4.213 3.167 -0.740 H12 A1C09 47 A1C09 H13 H13 H 0 1 N N N N N N 3.149 15.149 -19.566 5.981 3.096 -0.930 H13 A1C09 48 A1C09 H14 H14 H 0 1 N N N N N N 4.738 15.786 -19.022 4.928 2.226 -2.071 H14 A1C09 49 A1C09 H15 H15 H 0 1 N N N N N N 4.704 17.487 -20.882 5.223 1.608 0.903 H15 A1C09 50 A1C09 H16 H16 H 0 1 N N N N N N 5.897 15.065 -20.144 2.770 2.253 -0.850 H16 A1C09 51 A1C09 H17 H17 H 0 1 N N N N N N 6.433 16.531 -21.032 2.639 1.823 0.872 H17 A1C09 52 A1C09 H18 H18 H 0 1 N N N N N N 6.556 13.637 -21.991 0.539 1.292 -0.324 H18 A1C09 53 A1C09 H19 H19 H 0 1 N N N N N N 7.932 14.706 -21.554 1.440 0.256 -1.457 H19 A1C09 54 A1C09 H20 H20 H 0 1 N N N N N N 7.332 16.199 -23.322 1.219 -0.146 1.562 H20 A1C09 55 A1C09 H21 H21 H 0 1 N N N N N N 7.853 13.267 -23.814 0.127 -1.741 -0.801 H21 A1C09 56 A1C09 H22 H22 H 0 1 N N N N N N 15.636 13.064 -20.481 -8.248 0.829 0.978 H22 A1C09 57 A1C09 H23 H23 H 0 1 N N N N N N 15.700 13.286 -18.700 -8.095 1.275 -0.739 H23 A1C09 58 A1C09 H24 H24 H 0 1 N N N N N N 17.643 18.551 -19.974 -13.976 1.348 -0.324 H24 A1C09 59 A1C09 H25 H25 H 0 1 N N N N N N 16.863 17.901 -21.456 -12.898 2.083 0.887 H25 A1C09 60 A1C09 H26 H26 H 0 1 N N N N N N 15.976 17.888 -19.894 -12.745 2.529 -0.829 H26 A1C09 61 A1C09 H27 H27 H 0 1 N N N N N N 4.961 17.032 -23.210 3.738 -0.156 1.703 H27 A1C09 62 A1C09 H28 H28 H 0 1 N N N N N N 3.670 15.812 -23.475 4.678 -1.180 0.591 H28 A1C09 63 A1C09 H29 H29 H 0 1 N N N N N N 4.430 21.236 -22.598 9.187 2.667 2.141 H29 A1C09 64 A1C09 H30 H30 H 0 1 N N N N N N 2.291 22.005 -23.576 11.057 1.226 1.458 H30 A1C09 65 A1C09 H31 H31 H 0 1 N N N N N N 0.342 20.488 -23.642 10.722 -0.579 -0.143 H31 A1C09 66 A1C09 H32 H32 H 0 1 N N N N N N -0.671 18.298 -23.155 9.198 -1.852 -1.628 H32 A1C09 67 A1C09 H33 H33 H 0 1 N N N N N N -0.481 16.009 -22.247 6.963 -2.195 -2.533 H33 A1C09 68 A1C09 H34 H34 H 0 1 N N N N N N 1.650 15.237 -21.256 5.092 -0.758 -1.846 H34 A1C09 69 A1C09 H36 H36 H 0 1 N N N N N N 8.721 14.451 -27.356 -1.080 -3.708 -0.147 H36 A1C09 70 A1C09 H37 H37 H 0 1 N N N N N N 9.460 15.199 -26.107 -1.268 -4.176 1.438 H37 A1C09 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1C09 N23 C22 SING N N 1 A1C09 C22 C07 SING N N 2 A1C09 O21 C08 DOUB N N 3 A1C09 C07 C08 SING N N 4 A1C09 C07 C06 SING N N 5 A1C09 C24 C06 SING N N 6 A1C09 C24 C25 SING N N 7 A1C09 C08 N09 SING N N 8 A1C09 C06 C05 SING N N 9 A1C09 C31 C30 DOUB Y N 10 A1C09 C31 C32 SING Y N 11 A1C09 C30 C29 SING Y N 12 A1C09 C25 N03 SING N N 13 A1C09 N09 C10 DOUB N N 14 A1C09 C33 C32 DOUB Y N 15 A1C09 C33 C34 SING Y N 16 A1C09 C32 C27 SING Y N 17 A1C09 C29 C28 DOUB Y N 18 A1C09 C10 C11 SING N N 19 A1C09 C34 C35 DOUB Y N 20 A1C09 C27 C28 SING Y N 21 A1C09 C27 C26 DOUB Y N 22 A1C09 C05 C04 SING N N 23 A1C09 O20 C11 DOUB N N 24 A1C09 N03 C04 SING N N 25 A1C09 N03 C02 SING N N 26 A1C09 C35 C26 SING Y N 27 A1C09 C26 C02 SING N N 28 A1C09 C11 N12 SING N N 29 A1C09 O19 C16 DOUB N N 30 A1C09 C02 C01 SING N N 31 A1C09 C16 O17 SING N N 32 A1C09 C16 C15 SING N N 33 A1C09 C18 O17 SING N N 34 A1C09 N12 C13 SING N N 35 A1C09 C15 C14 SING N N 36 A1C09 C14 C13 SING N N 37 A1C09 C10 H1 SING N N 38 A1C09 N12 H2 SING N N 39 A1C09 C13 H3 SING N N 40 A1C09 C13 H4 SING N N 41 A1C09 C15 H5 SING N N 42 A1C09 C15 H6 SING N N 43 A1C09 C22 H7 SING N N 44 A1C09 C22 H8 SING N N 45 A1C09 C24 H9 SING N N 46 A1C09 C24 H10 SING N N 47 A1C09 C28 H11 SING N N 48 A1C09 C01 H12 SING N N 49 A1C09 C01 H13 SING N N 50 A1C09 C01 H14 SING N N 51 A1C09 C02 H15 SING N N 52 A1C09 C04 H16 SING N N 53 A1C09 C04 H17 SING N N 54 A1C09 C05 H18 SING N N 55 A1C09 C05 H19 SING N N 56 A1C09 C06 H20 SING N N 57 A1C09 C07 H21 SING N N 58 A1C09 C14 H22 SING N N 59 A1C09 C14 H23 SING N N 60 A1C09 C18 H24 SING N N 61 A1C09 C18 H25 SING N N 62 A1C09 C18 H26 SING N N 63 A1C09 C25 H27 SING N N 64 A1C09 C25 H28 SING N N 65 A1C09 C29 H29 SING N N 66 A1C09 C30 H30 SING N N 67 A1C09 C31 H31 SING N N 68 A1C09 C33 H32 SING N N 69 A1C09 C34 H33 SING N N 70 A1C09 C35 H34 SING N N 71 A1C09 N23 H36 SING N N 72 A1C09 N23 H37 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1C09 SMILES ACDLabs 14.52 "CC(c1cccc2ccccc21)N1CCC(CC1)C(CN)C(=O)/N=C/C(=O)NCCCC(=O)OC" A1C09 InChI InChI 1.06 "InChI=1S/C27H36N4O4/c1-19(22-10-5-8-20-7-3-4-9-23(20)22)31-15-12-21(13-16-31)24(17-28)27(34)30-18-25(32)29-14-6-11-26(33)35-2/h3-5,7-10,18-19,21,24H,6,11-17,28H2,1-2H3,(H,29,32)/b30-18+/t19-,24-/m1/s1" A1C09 InChIKey InChI 1.06 JEGZCZWXTCSBSC-BOAVDIIFSA-N A1C09 SMILES_CANONICAL CACTVS 3.385 "COC(=O)CCCNC(=O)C=NC(=O)[C@H](CN)C1CCN(CC1)[C@H](C)c2cccc3ccccc23" A1C09 SMILES CACTVS 3.385 "COC(=O)CCCNC(=O)C=NC(=O)[CH](CN)C1CCN(CC1)[CH](C)c2cccc3ccccc23" A1C09 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H](c1cccc2c1cccc2)N3CCC(CC3)[C@@H](CN)C(=O)/N=C/C(=O)NCCCC(=O)OC" A1C09 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(c1cccc2c1cccc2)N3CCC(CC3)C(CN)C(=O)N=CC(=O)NCCCC(=O)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1C09 "SYSTEMATIC NAME" ACDLabs 14.52 "methyl 4-{[(2E)-2-{[(2S)-3-amino-2-{1-[(1R)-1-(naphthalen-1-yl)ethyl]piperidin-4-yl}propanoyl]imino}acetyl]amino}butanoate" A1C09 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "methyl 4-[[(2~{E})-2-[(2~{S})-3-azanyl-2-[1-[(1~{R})-1-naphthalen-1-ylethyl]piperidin-4-yl]propanoyl]iminoethanoyl]amino]butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1C09 "Create component" 2025-11-18 RCSB A1C09 "Initial release" 2026-01-28 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1C09 _pdbx_chem_comp_synonyms.name "methyl (2E)-4-{[(2E)-2-{[(2S)-3-amino-2-{1-[(1R)-1-(naphthalen-1-yl)ethyl]piperidin-4-yl}propanoyl]imino}acetyl]amino}but-2-enoate bound form" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #