data_A1C4S # _chem_comp.id A1C4S _chem_comp.name "N-{6-[(3R)-2,6-dioxopiperidin-3-yl]naphthalen-1-yl}-N'-{2-[6-(trifluoromethyl)-1-benzothiophen-2-yl]propan-2-yl}urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H24 F3 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-01-12 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.569 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1C4S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 10AY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1C4S C10 C1 C 0 1 Y N N N N N 154.214 162.423 176.321 3.675 4.087 -0.735 C10 A1C4S 1 A1C4S C13 C2 C 0 1 Y N N N N N 152.248 164.130 173.627 6.013 1.288 -0.203 C13 A1C4S 2 A1C4S C15 C3 C 0 1 Y N N N N N 150.827 162.503 172.558 4.732 -0.713 0.118 C15 A1C4S 3 A1C4S C17 C4 C 0 1 Y N N N N N 152.295 161.838 174.378 3.579 1.347 -0.263 C17 A1C4S 4 A1C4S C20 C5 C 0 1 N N N N N N 150.844 165.773 169.435 8.514 -2.381 1.655 C20 A1C4S 5 A1C4S C21 C6 C 0 1 N N N N N N 149.582 165.072 168.947 8.518 -3.358 0.509 C21 A1C4S 6 A1C4S C24 C7 C 0 1 N N N N N N 149.231 164.549 171.475 7.309 -1.895 -0.882 C24 A1C4S 7 A1C4S C26 C8 C 0 1 Y N N N N N 150.163 156.715 178.049 -3.567 1.428 0.316 C26 A1C4S 8 A1C4S C28 C9 C 0 1 Y N N N N N 148.836 158.015 179.544 -5.816 0.798 0.421 C28 A1C4S 9 A1C4S C01 C10 C 0 1 N N N N N N 150.580 155.029 176.278 -2.513 3.516 -0.508 C01 A1C4S 10 A1C4S C02 C11 C 0 1 N N N N N N 151.148 156.264 176.972 -2.351 2.311 0.420 C02 A1C4S 11 A1C4S C03 C12 C 0 1 N N N N N N 152.455 155.900 177.662 -2.195 2.796 1.863 C03 A1C4S 12 A1C4S C05 C13 C 0 1 N N N N N N 151.996 158.574 176.199 0.051 2.141 0.046 C05 A1C4S 13 A1C4S C08 C14 C 0 1 Y N N N N N 152.792 160.808 175.236 2.383 2.082 -0.409 C08 A1C4S 14 A1C4S C09 C15 C 0 1 Y N N N N N 153.744 161.111 176.197 2.447 3.437 -0.648 C09 A1C4S 15 A1C4S C11 C16 C 0 1 Y N N N N N 153.730 163.423 175.482 4.844 3.404 -0.593 C11 A1C4S 16 A1C4S C12 C17 C 0 1 Y N N N N N 152.751 163.113 174.495 4.823 2.019 -0.354 C12 A1C4S 17 A1C4S C14 C18 C 0 1 Y N N N N N 151.294 163.814 172.667 5.956 -0.052 0.029 C14 A1C4S 18 A1C4S C16 C19 C 0 1 Y N N N N N 151.318 161.515 173.397 3.559 -0.035 -0.019 C16 A1C4S 19 A1C4S C18 C20 C 0 1 N N R N N N 150.711 164.914 171.708 7.234 -0.834 0.184 C18 A1C4S 20 A1C4S C19 C21 C 0 1 N N N N N N 151.521 164.976 170.480 7.261 -1.503 1.563 C19 A1C4S 21 A1C4S C27 C22 C 0 1 Y N N N N N 149.834 158.056 178.434 -4.795 1.819 0.594 C27 A1C4S 22 A1C4S C29 C23 C 0 1 Y N N N N N 148.466 156.745 179.943 -5.272 -0.413 -0.015 C29 A1C4S 23 A1C4S C31 C24 C 0 1 Y N N N N N 147.541 156.581 180.970 -6.110 -1.511 -0.235 C31 A1C4S 24 A1C4S C32 C25 C 0 1 Y N N N N N 146.993 157.701 181.589 -7.464 -1.400 -0.023 C32 A1C4S 25 A1C4S C33 C26 C 0 1 Y N N N N N 147.359 158.988 181.190 -8.007 -0.198 0.410 C33 A1C4S 26 A1C4S C34 C27 C 0 1 Y N N N N N 148.280 159.150 180.168 -7.210 0.883 0.629 C34 A1C4S 27 A1C4S C35 C28 C 0 1 N N N N N N 145.990 157.480 182.704 -8.361 -2.587 -0.263 C35 A1C4S 28 A1C4S F36 F1 F 0 1 N N N N N N 146.254 156.269 183.263 -8.473 -3.332 0.915 F36 A1C4S 29 A1C4S F37 F2 F 0 1 N N N N N N 144.728 157.490 182.187 -9.628 -2.142 -0.656 F37 A1C4S 30 A1C4S F38 F3 F 0 1 N N N N N N 146.116 158.448 183.653 -7.815 -3.388 -1.271 F38 A1C4S 31 A1C4S N04 N1 N 0 1 N N N N N N 151.430 157.252 175.930 -1.160 1.551 0.030 N04 A1C4S 32 A1C4S N07 N2 N 0 1 N N N N N N 152.255 159.459 175.067 1.146 1.441 -0.313 N07 A1C4S 33 A1C4S N23 N3 N 0 1 N N N N N N 148.792 164.458 170.053 7.935 -3.061 -0.661 N23 A1C4S 34 A1C4S O06 O1 O 0 1 N N N N N N 152.237 158.918 177.299 0.157 3.303 0.385 O06 A1C4S 35 A1C4S O22 O2 O 0 1 N N N N N N 149.251 165.014 167.811 9.060 -4.434 0.647 O22 A1C4S 36 A1C4S O25 O3 O 0 1 N N N N N N 148.481 164.350 172.364 6.792 -1.692 -1.959 O25 A1C4S 37 A1C4S S30 S1 S 0 1 Y N N N N N 149.300 155.649 179.010 -3.530 -0.248 -0.198 S30 A1C4S 38 A1C4S H101 H1 H 0 0 N N N N N N 154.955 162.661 177.070 3.701 5.150 -0.924 H101 A1C4S 39 A1C4S H131 H2 H 0 0 N N N N N N 152.609 165.144 173.717 6.969 1.787 -0.269 H131 A1C4S 40 A1C4S H151 H3 H 0 0 N N N N N N 150.080 162.258 171.817 4.714 -1.777 0.301 H151 A1C4S 41 A1C4S H202 H4 H 0 0 N N N N N N 150.573 166.755 169.850 8.507 -2.927 2.599 H202 A1C4S 42 A1C4S H201 H5 H 0 0 N N N N N N 151.530 165.911 168.586 9.403 -1.753 1.603 H201 A1C4S 43 A1C4S H011 H6 H 0 0 N N N N N N 149.635 155.290 175.779 -3.399 4.081 -0.218 H011 A1C4S 44 A1C4S H012 H7 H 0 0 N N N N N N 151.301 154.664 175.531 -1.633 4.154 -0.433 H012 A1C4S 45 A1C4S H013 H8 H 0 0 N N N N N N 150.395 154.242 177.024 -2.624 3.170 -1.536 H013 A1C4S 46 A1C4S H033 H9 H 0 0 N N N N N N 152.866 156.789 178.163 -2.079 1.938 2.525 H033 A1C4S 47 A1C4S H032 H10 H 0 0 N N N N N N 152.269 155.113 178.407 -1.315 3.435 1.939 H032 A1C4S 48 A1C4S H031 H11 H 0 0 N N N N N N 153.175 155.535 176.915 -3.080 3.362 2.153 H031 A1C4S 49 A1C4S H091 H12 H 0 0 N N N N N N 154.122 160.337 176.848 1.535 4.002 -0.769 H091 A1C4S 50 A1C4S H111 H13 H 0 0 N N N N N N 154.097 164.434 175.580 5.787 3.926 -0.664 H111 A1C4S 51 A1C4S H161 H14 H 0 0 N N N N N N 150.959 160.501 173.306 2.618 -0.558 0.062 H161 A1C4S 52 A1C4S H181 H15 H 0 0 N N N N N N 150.756 165.883 172.227 8.087 -0.161 0.089 H181 A1C4S 53 A1C4S H192 H16 H 0 0 N N N N N N 152.491 165.439 170.713 6.371 -2.121 1.687 H192 A1C4S 54 A1C4S H191 H17 H 0 0 N N N N N N 151.683 163.955 170.104 7.291 -0.739 2.340 H191 A1C4S 55 A1C4S H271 H18 H 0 0 N N N N N N 150.243 158.953 177.992 -5.025 2.821 0.924 H271 A1C4S 56 A1C4S H311 H19 H 0 0 N N N N N N 147.250 155.590 181.285 -5.692 -2.448 -0.573 H311 A1C4S 57 A1C4S H331 H20 H 0 0 N N N N N N 146.927 159.851 181.675 -9.072 -0.120 0.574 H331 A1C4S 58 A1C4S H341 H21 H 0 0 N N N N N N 148.570 160.141 179.851 -7.647 1.812 0.965 H341 A1C4S 59 A1C4S H041 H22 H 0 0 N N N N N N 151.224 157.010 174.982 -1.245 0.623 -0.240 H041 A1C4S 60 A1C4S H071 H23 H 0 0 N N N N N N 152.058 159.131 174.143 1.075 0.493 -0.504 H071 A1C4S 61 A1C4S H231 H24 H 0 0 N N N N N N 147.945 163.972 169.835 7.967 -3.715 -1.377 H231 A1C4S 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1C4S C02 C01 SING N N 1 A1C4S C03 C02 SING N N 2 A1C4S C05 N04 SING N N 3 A1C4S O06 C05 DOUB N N 4 A1C4S N07 C05 SING N N 5 A1C4S C08 N07 SING N N 6 A1C4S C09 C08 DOUB Y N 7 A1C4S C10 C09 SING Y N 8 A1C4S C11 C10 DOUB Y N 9 A1C4S C12 C11 SING Y N 10 A1C4S C13 C12 DOUB Y N 11 A1C4S C14 C13 SING Y N 12 A1C4S C16 C15 SING Y N 13 A1C4S C17 C16 DOUB Y N 14 A1C4S C15 C14 DOUB Y N 15 A1C4S C18 C14 SING N N 16 A1C4S C19 C18 SING N N 17 A1C4S C20 C19 SING N N 18 A1C4S C21 C20 SING N N 19 A1C4S O22 C21 DOUB N N 20 A1C4S N23 C21 SING N N 21 A1C4S C24 N23 SING N N 22 A1C4S O25 C24 DOUB N N 23 A1C4S N04 C02 SING N N 24 A1C4S C26 C02 SING N N 25 A1C4S C27 C26 DOUB Y N 26 A1C4S C28 C27 SING Y N 27 A1C4S C29 C28 DOUB Y N 28 A1C4S S30 C29 SING Y N 29 A1C4S C31 C29 SING Y N 30 A1C4S C32 C31 DOUB Y N 31 A1C4S C34 C33 DOUB Y N 32 A1C4S C33 C32 SING Y N 33 A1C4S C35 C32 SING N N 34 A1C4S F36 C35 SING N N 35 A1C4S F37 C35 SING N N 36 A1C4S F38 C35 SING N N 37 A1C4S C08 C17 SING Y N 38 A1C4S C12 C17 SING Y N 39 A1C4S C18 C24 SING N N 40 A1C4S C26 S30 SING Y N 41 A1C4S C28 C34 SING Y N 42 A1C4S C10 H101 SING N N 43 A1C4S C13 H131 SING N N 44 A1C4S C15 H151 SING N N 45 A1C4S C20 H202 SING N N 46 A1C4S C20 H201 SING N N 47 A1C4S C01 H011 SING N N 48 A1C4S C01 H012 SING N N 49 A1C4S C01 H013 SING N N 50 A1C4S C03 H033 SING N N 51 A1C4S C03 H032 SING N N 52 A1C4S C03 H031 SING N N 53 A1C4S C09 H091 SING N N 54 A1C4S C11 H111 SING N N 55 A1C4S C16 H161 SING N N 56 A1C4S C18 H181 SING N N 57 A1C4S C19 H192 SING N N 58 A1C4S C19 H191 SING N N 59 A1C4S C27 H271 SING N N 60 A1C4S C31 H311 SING N N 61 A1C4S C33 H331 SING N N 62 A1C4S C34 H341 SING N N 63 A1C4S N04 H041 SING N N 64 A1C4S N07 H071 SING N N 65 A1C4S N23 H231 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1C4S SMILES ACDLabs 14.52 "O=C1NC(=O)CCC1c1ccc2c(c1)cccc2NC(=O)NC(C)(C)c1cc2ccc(cc2s1)C(F)(F)F" A1C4S InChI InChI 1.06 "InChI=1S/C28H24F3N3O3S/c1-27(2,23-13-17-6-8-18(28(29,30)31)14-22(17)38-23)34-26(37)32-21-5-3-4-15-12-16(7-9-19(15)21)20-10-11-24(35)33-25(20)36/h3-9,12-14,20H,10-11H2,1-2H3,(H2,32,34,37)(H,33,35,36)/t20-/m1/s1" A1C4S InChIKey InChI 1.06 ZULFEJXMTVXZMW-HXUWFJFHSA-N A1C4S SMILES_CANONICAL CACTVS 3.385 "CC(C)(NC(=O)Nc1cccc2cc(ccc12)[C@H]3CCC(=O)NC3=O)c4sc5cc(ccc5c4)C(F)(F)F" A1C4S SMILES CACTVS 3.385 "CC(C)(NC(=O)Nc1cccc2cc(ccc12)[CH]3CCC(=O)NC3=O)c4sc5cc(ccc5c4)C(F)(F)F" A1C4S SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)(c1cc2ccc(cc2s1)C(F)(F)F)NC(=O)Nc3cccc4c3ccc(c4)[C@H]5CCC(=O)NC5=O" A1C4S SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)(c1cc2ccc(cc2s1)C(F)(F)F)NC(=O)Nc3cccc4c3ccc(c4)C5CCC(=O)NC5=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1C4S "SYSTEMATIC NAME" ACDLabs 14.52 "N-{6-[(3R)-2,6-dioxopiperidin-3-yl]naphthalen-1-yl}-N'-{2-[6-(trifluoromethyl)-1-benzothiophen-2-yl]propan-2-yl}urea" A1C4S "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-[6-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]naphthalen-1-yl]-3-[2-[6-(trifluoromethyl)-1-benzothiophen-2-yl]propan-2-yl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1C4S "Create component" 2026-01-12 RCSB A1C4S "Initial release" 2026-04-22 RCSB #