data_A1C65 # _chem_comp.id A1C65 _chem_comp.name "(4P)-N-[4-(4-aminopiperidin-1-yl)-2-methoxyphenyl]-5-chloro-4-(1H-indol-3-yl)pyrimidin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H25 Cl N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-01-30 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 448.948 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1C65 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 10OO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1C65 N1 N1 N 0 1 N N N N N N -23.110 -8.749 -16.573 5.413 -0.116 0.112 N1 A1C65 1 A1C65 N3 N2 N 0 1 N N N N N N -18.503 -6.256 -18.647 -0.029 1.039 0.470 N3 A1C65 2 A1C65 C4 C1 C 0 1 Y N N N N N -21.927 -8.093 -17.085 4.048 0.176 0.201 C4 A1C65 3 A1C65 C5 C2 C 0 1 N N N N N N -24.273 -7.924 -16.173 6.143 0.974 -0.548 C5 A1C65 4 A1C65 C6 C3 C 0 1 N N N N N N -25.575 -8.707 -16.052 7.645 0.687 -0.499 C6 A1C65 5 A1C65 C7 C4 C 0 1 N N N N N N -25.373 -9.980 -15.251 7.929 -0.642 -1.204 C7 A1C65 6 A1C65 C8 C5 C 0 1 N N N N N N -24.358 -10.874 -15.932 7.120 -1.753 -0.528 C8 A1C65 7 A1C65 C10 C6 C 0 1 Y N N N N N -21.683 -6.733 -16.804 3.113 -0.704 -0.328 C10 A1C65 8 A1C65 C13 C7 C 0 1 Y N N N N N -18.376 -4.914 -18.979 -0.956 0.010 0.443 C13 A1C65 9 A1C65 C15 C8 C 0 1 Y N N N N N -18.025 -2.375 -19.635 -2.741 -1.996 0.402 C15 A1C65 10 A1C65 C17 C9 C 0 1 Y N N N N N -20.432 -1.991 -18.865 -4.604 -0.329 0.352 C17 A1C65 11 A1C65 C20 C10 C 0 1 Y N N N N N -23.989 -1.451 -18.301 -7.525 1.395 -0.918 C20 A1C65 12 A1C65 C21 C11 C 0 1 Y N N N N N -24.559 -2.704 -18.429 -7.074 2.188 -1.950 C21 A1C65 13 A1C65 C22 C12 C 0 1 Y N N N N N -23.790 -3.817 -18.793 -5.730 2.200 -2.298 C22 A1C65 14 A1C65 C24 C13 C 0 1 Y N N N N N -21.800 -2.468 -18.794 -5.270 0.608 -0.568 C24 A1C65 15 A1C65 C1 C14 C 0 1 N N N N N N -19.054 -10.298 -19.309 2.876 3.622 2.071 C1 A1C65 16 A1C65 O1 O1 O 0 1 N N N N N N -18.881 -8.855 -19.070 1.862 2.767 1.539 O1 A1C65 17 A1C65 C2 C15 C 0 1 Y N N N N N -19.846 -8.193 -18.350 2.276 1.630 0.918 C2 A1C65 18 A1C65 C3 C16 C 0 1 Y N N N N N -20.990 -8.799 -17.835 3.628 1.344 0.825 C3 A1C65 19 A1C65 N2 N3 N 0 1 N N N N N N -26.654 -10.699 -15.066 9.362 -0.951 -1.109 N2 A1C65 20 A1C65 C9 C17 C 0 1 N N N N N N -23.071 -10.217 -16.426 5.633 -1.395 -0.576 C9 A1C65 21 A1C65 C11 C18 C 0 1 Y N N N N N -20.562 -6.111 -17.311 1.764 -0.417 -0.240 C11 A1C65 22 A1C65 C12 C19 C 0 1 Y N N N N N -19.616 -6.832 -18.076 1.341 0.751 0.377 C12 A1C65 23 A1C65 N4 N4 N 0 1 Y N N N N N -17.174 -4.561 -19.428 -0.529 -1.244 0.453 N4 A1C65 24 A1C65 C14 C20 C 0 1 Y N N N N N -16.983 -3.273 -19.733 -1.383 -2.257 0.433 C14 A1C65 25 A1C65 CL1 CL1 CL 0 0 N N N N N N -17.768 -0.698 -19.995 -3.894 -3.294 0.368 CL1 A1C65 26 A1C65 C16 C21 C 0 1 Y N N N N N -19.256 -2.815 -19.164 -3.163 -0.661 0.386 C16 A1C65 27 A1C65 C18 C22 C 0 1 Y N N N N N -20.480 -0.632 -18.519 -5.570 -0.825 1.168 C18 A1C65 28 A1C65 N5 N5 N 0 1 Y N N N N N -21.757 -0.247 -18.287 -6.774 -0.282 0.839 N5 A1C65 29 A1C65 C19 C23 C 0 1 Y N N N N N -22.596 -1.354 -18.436 -6.630 0.596 -0.214 C19 A1C65 30 A1C65 C23 C24 C 0 1 Y N N N N N -22.427 -3.708 -18.984 -4.828 1.415 -1.614 C23 A1C65 31 A1C65 N6 N6 N 0 1 Y N N N N N -19.416 -4.119 -18.806 -2.247 0.306 0.413 N6 A1C65 32 A1C65 H18 H1 H 0 1 N N N N N N -17.723 -6.853 -18.838 -0.327 1.958 0.554 H18 A1C65 33 A1C65 H5 H2 H 0 1 N N N N N N -24.053 -7.466 -15.198 5.821 1.050 -1.587 H5 A1C65 34 A1C65 H6 H3 H 0 1 N N N N N N -24.413 -7.135 -16.926 5.935 1.913 -0.035 H6 A1C65 35 A1C65 H7 H4 H 0 1 N N N N N N -26.326 -8.081 -15.548 8.185 1.489 -1.003 H7 A1C65 36 A1C65 H8 H5 H 0 1 N N N N N N -25.932 -8.969 -17.059 7.970 0.625 0.539 H8 A1C65 37 A1C65 H9 H6 H 0 1 N N N N N N -24.979 -9.704 -14.262 7.641 -0.567 -2.253 H9 A1C65 38 A1C65 H13 H7 H 0 1 N N N N N N -24.851 -11.332 -16.802 7.285 -2.694 -1.052 H13 A1C65 39 A1C65 H12 H8 H 0 1 N N N N N N -24.075 -11.659 -15.216 7.437 -1.853 0.510 H12 A1C65 40 A1C65 H16 H9 H 0 1 N N N N N N -22.376 -6.177 -16.190 3.441 -1.613 -0.809 H16 A1C65 41 A1C65 H22 H10 H 0 1 N N N N N N -24.594 -0.578 -18.104 -8.573 1.394 -0.655 H22 A1C65 42 A1C65 H23 H11 H 0 1 N N N N N N -25.616 -2.827 -18.245 -7.772 2.808 -2.493 H23 A1C65 43 A1C65 H24 H12 H 0 1 N N N N N N -24.271 -4.775 -18.926 -5.391 2.827 -3.109 H24 A1C65 44 A1C65 H2 H13 H 0 1 N N N N N N -18.204 -10.678 -19.895 2.412 4.490 2.537 H2 A1C65 45 A1C65 H3 H14 H 0 1 N N N N N N -19.100 -10.826 -18.345 3.457 3.077 2.815 H3 A1C65 46 A1C65 H1 H15 H 0 1 N N N N N N -19.988 -10.468 -19.865 3.534 3.950 1.266 H1 A1C65 47 A1C65 H4 H16 H 0 1 N N N N N N -21.155 -9.850 -18.023 4.355 2.028 1.237 H4 A1C65 48 A1C65 H10 H17 H 0 1 N N N N N N -26.496 -11.532 -14.537 9.575 -1.825 -1.567 H10 A1C65 49 A1C65 H26 H18 H 0 1 N N N N N N -27.298 -10.111 -14.577 9.920 -0.200 -1.486 H26 A1C65 50 A1C65 H15 H20 H 0 1 N N N N N N -22.829 -10.647 -17.409 5.055 -2.177 -0.083 H15 A1C65 51 A1C65 H14 H21 H 0 1 N N N N N N -22.272 -10.463 -15.711 5.314 -1.308 -1.615 H14 A1C65 52 A1C65 H17 H22 H 0 1 N N N N N N -20.404 -5.060 -17.122 1.039 -1.102 -0.653 H17 A1C65 53 A1C65 H19 H23 H 0 1 N N N N N N -16.010 -2.935 -20.057 -1.023 -3.275 0.442 H19 A1C65 54 A1C65 H20 H24 H 0 1 N N N N N N -19.619 0.016 -18.448 -5.407 -1.543 1.959 H20 A1C65 55 A1C65 H21 H25 H 0 1 N N N N N N -22.051 0.678 -18.048 -7.613 -0.484 1.282 H21 A1C65 56 A1C65 H25 H26 H 0 1 N N N N N N -21.848 -4.571 -19.278 -3.783 1.426 -1.887 H25 A1C65 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1C65 CL1 C15 SING N N 1 A1C65 C14 C15 DOUB Y N 2 A1C65 C14 N4 SING Y N 3 A1C65 C15 C16 SING Y N 4 A1C65 N4 C13 DOUB Y N 5 A1C65 C1 O1 SING N N 6 A1C65 C16 C17 SING N N 7 A1C65 C16 N6 DOUB Y N 8 A1C65 O1 C2 SING N N 9 A1C65 C23 C24 DOUB Y N 10 A1C65 C23 C22 SING Y N 11 A1C65 C13 N6 SING Y N 12 A1C65 C13 N3 SING N N 13 A1C65 C17 C24 SING Y N 14 A1C65 C17 C18 DOUB Y N 15 A1C65 C24 C19 SING Y N 16 A1C65 C22 C21 DOUB Y N 17 A1C65 N3 C12 SING N N 18 A1C65 C18 N5 SING Y N 19 A1C65 C19 C20 DOUB Y N 20 A1C65 C19 N5 SING Y N 21 A1C65 C21 C20 SING Y N 22 A1C65 C2 C12 DOUB Y N 23 A1C65 C2 C3 SING Y N 24 A1C65 C12 C11 SING Y N 25 A1C65 C3 C4 DOUB Y N 26 A1C65 C11 C10 DOUB Y N 27 A1C65 C4 C10 SING Y N 28 A1C65 C4 N1 SING N N 29 A1C65 N1 C9 SING N N 30 A1C65 N1 C5 SING N N 31 A1C65 C9 C8 SING N N 32 A1C65 C5 C6 SING N N 33 A1C65 C6 C7 SING N N 34 A1C65 C8 C7 SING N N 35 A1C65 C7 N2 SING N N 36 A1C65 N3 H18 SING N N 37 A1C65 C5 H5 SING N N 38 A1C65 C5 H6 SING N N 39 A1C65 C6 H7 SING N N 40 A1C65 C6 H8 SING N N 41 A1C65 C7 H9 SING N N 42 A1C65 C8 H13 SING N N 43 A1C65 C8 H12 SING N N 44 A1C65 C10 H16 SING N N 45 A1C65 C20 H22 SING N N 46 A1C65 C21 H23 SING N N 47 A1C65 C22 H24 SING N N 48 A1C65 C1 H2 SING N N 49 A1C65 C1 H3 SING N N 50 A1C65 C1 H1 SING N N 51 A1C65 C3 H4 SING N N 52 A1C65 N2 H10 SING N N 53 A1C65 N2 H26 SING N N 54 A1C65 C9 H15 SING N N 55 A1C65 C9 H14 SING N N 56 A1C65 C11 H17 SING N N 57 A1C65 C14 H19 SING N N 58 A1C65 C18 H20 SING N N 59 A1C65 N5 H21 SING N N 60 A1C65 C23 H25 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1C65 SMILES ACDLabs 14.52 "Clc1cnc(nc1c1c[NH]c2ccccc21)Nc1ccc(cc1OC)N1CCC(N)CC1" A1C65 InChI InChI 1.06 "InChI=1S/C24H25ClN6O/c1-32-22-12-16(31-10-8-15(26)9-11-31)6-7-21(22)29-24-28-14-19(25)23(30-24)18-13-27-20-5-3-2-4-17(18)20/h2-7,12-15,27H,8-11,26H2,1H3,(H,28,29,30)" A1C65 InChIKey InChI 1.06 GCYIGMXOIWJGBU-UHFFFAOYSA-N A1C65 SMILES_CANONICAL CACTVS 3.385 "COc1cc(ccc1Nc2ncc(Cl)c(n2)c3c[nH]c4ccccc34)N5CCC(N)CC5" A1C65 SMILES CACTVS 3.385 "COc1cc(ccc1Nc2ncc(Cl)c(n2)c3c[nH]c4ccccc34)N5CCC(N)CC5" A1C65 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "COc1cc(ccc1Nc2ncc(c(n2)c3c[nH]c4c3cccc4)Cl)N5CCC(CC5)N" A1C65 SMILES "OpenEye OEToolkits" 3.1.0.0 "COc1cc(ccc1Nc2ncc(c(n2)c3c[nH]c4c3cccc4)Cl)N5CCC(CC5)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1C65 "SYSTEMATIC NAME" ACDLabs 14.52 "(4P)-N-[4-(4-aminopiperidin-1-yl)-2-methoxyphenyl]-5-chloro-4-(1H-indol-3-yl)pyrimidin-2-amine" A1C65 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[4-(4-azanylpiperidin-1-yl)-2-methoxy-phenyl]-5-chloranyl-4-(1~{H}-indol-3-yl)pyrimidin-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1C65 "Create component" 2026-01-30 RCSB A1C65 "Initial release" 2026-04-15 RCSB #