data_A1C66 # _chem_comp.id A1C66 _chem_comp.name "N-[(3M)-3-{5-chloro-2-[4-(morpholin-4-yl)anilino]pyrimidin-4-yl}-1-methyl-1H-indol-6-yl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H27 Cl N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-01-30 _chem_comp.pdbx_modified_date 2026-04-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 490.985 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1C66 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 10OQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1C66 N1 N1 N 0 1 N N N N N N 18.079 4.936 16.025 6.477 2.525 -0.062 N1 A1C66 1 A1C66 N3 N2 N 0 1 N N N N N N 17.242 -2.099 22.982 -2.004 0.545 -0.893 N3 A1C66 2 A1C66 C4 C1 C 0 1 Y N N N N N 18.010 3.785 16.840 5.404 1.628 -0.117 C4 A1C66 3 A1C66 C5 C2 C 0 1 Y N N N N N 18.770 3.815 18.002 4.130 2.049 0.262 C5 A1C66 4 A1C66 C6 C3 C 0 1 Y N N N N N 18.738 2.759 18.873 3.073 1.185 0.212 C6 A1C66 5 A1C66 C7 C4 C 0 1 Y N N N N N 18.014 1.615 18.518 3.268 -0.126 -0.219 C7 A1C66 6 A1C66 C8 C5 C 0 1 Y N N N N N 17.823 0.331 19.121 2.378 -1.288 -0.391 C8 A1C66 7 A1C66 C10 C6 C 0 1 Y N N N N N 18.078 -1.341 22.238 -1.188 -0.445 -0.371 C10 A1C66 8 A1C66 C13 C7 C 0 1 Y N N N N N 14.397 -4.305 23.556 -5.407 -0.609 -0.111 C13 A1C66 9 A1C66 C15 C8 C 0 1 N N N N N N 11.201 -3.824 21.936 -7.919 2.001 0.503 C15 A1C66 10 A1C66 C17 C9 C 0 1 N N N N N N 11.440 -6.569 21.307 -9.686 -0.128 -0.191 C17 A1C66 11 A1C66 C20 C10 C 0 1 Y N N N N N 15.190 -2.490 21.580 -4.029 1.777 -0.423 C20 A1C66 12 A1C66 C21 C11 C 0 1 Y N N N N N 20.159 -0.498 21.989 -0.984 -2.374 0.877 C21 A1C66 13 A1C66 C22 C12 C 0 1 Y N N N N N 19.763 0.073 20.803 0.379 -2.373 0.648 C22 A1C66 14 A1C66 C24 C13 C 0 1 N N N N N N 15.748 0.058 16.110 5.550 -2.711 -1.455 C24 A1C66 15 A1C66 C26 C14 C 0 1 Y N N N N N 17.217 2.706 16.485 5.614 0.332 -0.553 C26 A1C66 16 A1C66 C1 C15 C 0 1 N N N N N N 18.986 6.284 13.659 10.114 2.315 0.819 C1 A1C66 17 A1C66 C2 C16 C 0 1 N N N N N N 17.720 6.539 14.377 8.841 3.066 0.427 C2 A1C66 18 A1C66 C3 C17 C 0 1 N N N N N N 17.264 5.287 15.040 7.705 2.087 0.281 C3 A1C66 19 A1C66 O1 O1 O 0 1 N N N N N N 16.238 4.693 14.706 7.895 0.904 0.471 O1 A1C66 20 A1C66 C9 C18 C 0 1 Y N N N N N 18.457 -0.150 20.333 0.925 -1.336 -0.119 C9 A1C66 21 A1C66 N2 N3 N 0 1 Y N N N N N 17.633 -0.910 21.064 0.113 -0.401 -0.611 N2 A1C66 22 A1C66 C11 C19 C 0 1 Y N N N N N 15.987 -2.702 22.695 -3.370 0.565 -0.581 C11 A1C66 23 A1C66 C12 C20 C 0 1 Y N N N N N 15.566 -3.617 23.688 -4.064 -0.628 -0.430 C12 A1C66 24 A1C66 C14 C21 C 0 1 Y N N N N N 13.543 -4.016 22.487 -6.065 0.603 0.054 C14 A1C66 25 A1C66 N4 N4 N 0 1 N N N N N N 12.295 -4.646 22.403 -7.427 0.622 0.378 N4 A1C66 26 A1C66 C16 C22 C 0 1 N N N N N N 10.706 -4.423 20.656 -9.393 1.976 0.916 C16 A1C66 27 A1C66 O2 O2 O 0 1 N N N N N N 10.327 -5.775 20.878 -10.138 1.220 -0.043 O2 A1C66 28 A1C66 C18 C23 C 0 1 N N N N N N 12.025 -6.069 22.598 -8.215 -0.124 -0.614 C18 A1C66 29 A1C66 C19 C24 C 0 1 Y N N N N N 13.990 -3.145 21.471 -5.372 1.796 -0.104 C19 A1C66 30 A1C66 N5 N5 N 0 1 Y N N N N N 19.303 -1.133 22.781 -1.730 -1.409 0.359 N5 A1C66 31 A1C66 CL1 CL1 CL 0 0 N N N N N N 20.904 0.834 19.808 1.392 -3.619 1.307 CL1 A1C66 32 A1C66 C23 C25 C 0 1 Y N N N N N 16.906 -0.294 18.317 3.151 -2.305 -0.850 C23 A1C66 33 A1C66 N6 N6 N 0 1 Y N N N N N 16.627 0.420 17.215 4.440 -1.883 -0.978 N6 A1C66 34 A1C66 C25 C26 C 0 1 Y N N N N N 17.271 1.614 17.327 4.548 -0.560 -0.603 C25 A1C66 35 A1C66 H1 H1 H 0 1 N N N N N N 18.835 5.563 16.214 6.338 3.462 -0.274 H1 A1C66 36 A1C66 H2 H2 H 0 1 N N N N N N 17.569 -2.268 23.912 -1.630 1.225 -1.475 H2 A1C66 37 A1C66 H3 H3 H 0 1 N N N N N N 19.388 4.674 18.219 3.978 3.065 0.596 H3 A1C66 38 A1C66 H4 H4 H 0 1 N N N N N N 19.262 2.808 19.816 2.089 1.517 0.507 H4 A1C66 39 A1C66 H5 H5 H 0 1 N N N N N N 14.132 -5.068 24.272 -5.948 -1.537 0.007 H5 A1C66 40 A1C66 H6 H6 H 0 1 N N N N N N 11.551 -2.796 21.759 -7.338 2.527 1.261 H6 A1C66 41 A1C66 H7 H7 H 0 1 N N N N N N 10.394 -3.813 22.683 -7.817 2.513 -0.454 H7 A1C66 42 A1C66 H8 H8 H 0 1 N N N N N N 11.102 -7.606 21.448 -9.790 -0.653 0.759 H8 A1C66 43 A1C66 H9 H9 H 0 1 N N N N N N 12.218 -6.539 20.530 -10.282 -0.632 -0.952 H9 A1C66 44 A1C66 H10 H10 H 0 1 N N N N N N 15.512 -1.813 20.802 -3.489 2.704 -0.540 H10 A1C66 45 A1C66 H11 H11 H 0 1 N N N N N N 21.195 -0.428 22.285 -1.437 -3.155 1.470 H11 A1C66 46 A1C66 H12 H12 H 0 1 N N N N N N 15.361 -0.959 16.267 6.023 -3.207 -0.607 H12 A1C66 47 A1C66 H13 H13 H 0 1 N N N N N N 14.908 0.767 16.062 5.172 -3.461 -2.149 H13 A1C66 48 A1C66 H14 H14 H 0 1 N N N N N N 16.312 0.094 15.166 6.281 -2.082 -1.962 H14 A1C66 49 A1C66 H15 H15 H 0 1 N N N N N N 16.594 2.719 15.603 6.602 0.013 -0.849 H15 A1C66 50 A1C66 H16 H16 H 0 1 N N N N N N 19.323 7.209 13.169 10.359 1.587 0.046 H16 A1C66 51 A1C66 H17 H17 H 0 1 N N N N N N 19.752 5.948 14.374 10.936 3.023 0.925 H17 A1C66 52 A1C66 H18 H18 H 0 1 N N N N N N 18.826 5.504 12.900 9.955 1.799 1.766 H18 A1C66 53 A1C66 H19 H19 H 0 1 N N N N N N 17.880 7.319 15.136 8.595 3.794 1.201 H19 A1C66 54 A1C66 H20 H20 H 0 1 N N N N N N 16.954 6.875 13.662 9.000 3.582 -0.519 H20 A1C66 55 A1C66 H21 H21 H 0 1 N N N N N N 16.180 -3.773 24.563 -3.554 -1.571 -0.561 H21 A1C66 56 A1C66 H22 H22 H 0 1 N N N N N N 11.505 -4.386 19.901 -9.488 1.512 1.898 H22 A1C66 57 A1C66 H23 H23 H 0 1 N N N N N N 9.836 -3.853 20.297 -9.778 2.995 0.955 H23 A1C66 58 A1C66 H24 H24 H 0 1 N N N N N N 11.309 -6.211 23.421 -7.850 -1.150 -0.673 H24 A1C66 59 A1C66 H25 H25 H 0 1 N N N N N N 12.958 -6.606 22.826 -8.118 0.353 -1.589 H25 A1C66 60 A1C66 H26 H26 H 0 1 N N N N N N 13.378 -2.992 20.594 -5.884 2.738 0.020 H26 A1C66 61 A1C66 H27 H27 H 0 1 N N N N N N 16.459 -1.251 18.544 2.798 -3.300 -1.078 H27 A1C66 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1C66 C1 C2 SING N N 1 A1C66 C2 C3 SING N N 2 A1C66 O1 C3 DOUB N N 3 A1C66 C3 N1 SING N N 4 A1C66 N1 C4 SING N N 5 A1C66 C24 N6 SING N N 6 A1C66 C26 C4 DOUB Y N 7 A1C66 C26 C25 SING Y N 8 A1C66 C4 C5 SING Y N 9 A1C66 N6 C25 SING Y N 10 A1C66 N6 C23 SING Y N 11 A1C66 C25 C7 DOUB Y N 12 A1C66 C5 C6 DOUB Y N 13 A1C66 C23 C8 DOUB Y N 14 A1C66 C7 C6 SING Y N 15 A1C66 C7 C8 SING Y N 16 A1C66 C8 C9 SING N N 17 A1C66 CL1 C22 SING N N 18 A1C66 C9 C22 DOUB Y N 19 A1C66 C9 N2 SING Y N 20 A1C66 C16 O2 SING N N 21 A1C66 C16 C15 SING N N 22 A1C66 C22 C21 SING Y N 23 A1C66 O2 C17 SING N N 24 A1C66 N2 C10 DOUB Y N 25 A1C66 C17 C18 SING N N 26 A1C66 C19 C20 DOUB Y N 27 A1C66 C19 C14 SING Y N 28 A1C66 C20 C11 SING Y N 29 A1C66 C15 N4 SING N N 30 A1C66 C21 N5 DOUB Y N 31 A1C66 C10 N5 SING Y N 32 A1C66 C10 N3 SING N N 33 A1C66 N4 C14 SING N N 34 A1C66 N4 C18 SING N N 35 A1C66 C14 C13 DOUB Y N 36 A1C66 C11 N3 SING N N 37 A1C66 C11 C12 DOUB Y N 38 A1C66 C13 C12 SING Y N 39 A1C66 N1 H1 SING N N 40 A1C66 N3 H2 SING N N 41 A1C66 C5 H3 SING N N 42 A1C66 C6 H4 SING N N 43 A1C66 C13 H5 SING N N 44 A1C66 C15 H6 SING N N 45 A1C66 C15 H7 SING N N 46 A1C66 C17 H8 SING N N 47 A1C66 C17 H9 SING N N 48 A1C66 C20 H10 SING N N 49 A1C66 C21 H11 SING N N 50 A1C66 C24 H12 SING N N 51 A1C66 C24 H13 SING N N 52 A1C66 C24 H14 SING N N 53 A1C66 C26 H15 SING N N 54 A1C66 C1 H16 SING N N 55 A1C66 C1 H17 SING N N 56 A1C66 C1 H18 SING N N 57 A1C66 C2 H19 SING N N 58 A1C66 C2 H20 SING N N 59 A1C66 C12 H21 SING N N 60 A1C66 C16 H22 SING N N 61 A1C66 C16 H23 SING N N 62 A1C66 C18 H24 SING N N 63 A1C66 C18 H25 SING N N 64 A1C66 C19 H26 SING N N 65 A1C66 C23 H27 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1C66 SMILES ACDLabs 14.52 "CCC(=O)Nc1cc2c(cc1)c(cn2C)c1nc(ncc1Cl)Nc1ccc(cc1)N1CCOCC1" A1C66 InChI InChI 1.06 "InChI=1S/C26H27ClN6O2/c1-3-24(34)29-18-6-9-20-21(16-32(2)23(20)14-18)25-22(27)15-28-26(31-25)30-17-4-7-19(8-5-17)33-10-12-35-13-11-33/h4-9,14-16H,3,10-13H2,1-2H3,(H,29,34)(H,28,30,31)" A1C66 InChIKey InChI 1.06 NXNHFUXTSXLWDY-UHFFFAOYSA-N A1C66 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1ccc2c(c1)n(C)cc2c3nc(Nc4ccc(cc4)N5CCOCC5)ncc3Cl" A1C66 SMILES CACTVS 3.385 "CCC(=O)Nc1ccc2c(c1)n(C)cc2c3nc(Nc4ccc(cc4)N5CCOCC5)ncc3Cl" A1C66 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1ccc2c(c1)n(cc2c3c(cnc(n3)Nc4ccc(cc4)N5CCOCC5)Cl)C" A1C66 SMILES "OpenEye OEToolkits" 3.1.0.0 "CCC(=O)Nc1ccc2c(c1)n(cc2c3c(cnc(n3)Nc4ccc(cc4)N5CCOCC5)Cl)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1C66 "SYSTEMATIC NAME" ACDLabs 14.52 "N-[(3M)-3-{5-chloro-2-[4-(morpholin-4-yl)anilino]pyrimidin-4-yl}-1-methyl-1H-indol-6-yl]propanamide" A1C66 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[3-[5-chloranyl-2-[(4-morpholin-4-ylphenyl)amino]pyrimidin-4-yl]-1-methyl-indol-6-yl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1C66 "Create component" 2026-01-30 RCSB A1C66 "Modify PCM" 2026-02-02 RCSB A1C66 "Initial release" 2026-04-15 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1C66 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #