data_A1CB0 # _chem_comp.id A1CB0 _chem_comp.name "(6R,13R,14R)-10-fluoro-11-[2-(2-hydroxypropan-2-yl)pyrimidin-5-yl]-7H-6,14-methanopyrido[3',2':4,5]imidazo[1,2-b][2,5]benzodiazocin-5(14H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H19 F N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-09 _chem_comp.pdbx_modified_date 2025-07-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 430.434 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CB0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9OJS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CB0 C5 C1 C 0 1 Y N N N N N -16.966 -3.576 22.897 -4.942 0.592 -0.158 C5 A1CB0 1 A1CB0 C7 C2 C 0 1 Y N N N N N -15.331 -3.038 21.420 -2.676 0.774 0.177 C7 A1CB0 2 A1CB0 C8 C3 C 0 1 Y N N N N N -16.237 -2.406 20.576 -2.558 -0.612 0.043 C8 A1CB0 3 A1CB0 N12 N1 N 0 1 Y N N N N N -14.483 -1.248 19.485 -0.163 -0.644 -0.310 N12 A1CB0 4 A1CB0 C13 C4 C 0 1 Y N N N N N -13.980 -0.661 18.399 1.016 -1.240 -0.209 C13 A1CB0 5 A1CB0 C15 C5 C 0 1 Y N N N N N -16.023 -0.675 17.158 0.034 -3.209 0.869 C15 A1CB0 6 A1CB0 C20 C6 C 0 1 N N N N N N -11.344 0.755 16.355 4.639 -1.774 -0.381 C20 A1CB0 7 A1CB0 C22 C7 C 0 1 N N N N N N -10.395 0.456 18.556 4.022 0.028 -1.984 C22 A1CB0 8 A1CB0 C24 C8 C 0 1 Y N N N N N -10.979 -1.891 18.844 2.940 1.460 -0.311 C24 A1CB0 9 A1CB0 C26 C9 C 0 1 Y N N N N N -10.733 -4.193 19.520 2.188 3.399 0.879 C26 A1CB0 10 A1CB0 C28 C10 C 0 1 Y N N N N N -9.623 -3.415 17.542 4.492 2.763 1.017 C28 A1CB0 11 A1CB0 C1 C11 C 0 1 N N N N N N -16.281 -4.208 25.301 -6.110 2.778 -0.078 C1 A1CB0 12 A1CB0 C2 C12 C 0 1 N N N N N N -17.375 -4.203 24.238 -6.284 1.269 -0.264 C2 A1CB0 13 A1CB0 C3 C13 C 0 1 N N N N N N -17.875 -5.621 24.000 -6.887 0.992 -1.643 C3 A1CB0 14 A1CB0 O4 O1 O 0 1 N N N N N N -18.478 -3.465 24.802 -7.155 0.761 0.748 O4 A1CB0 15 A1CB0 N6 N2 N 0 1 Y N N N N N -15.670 -3.617 22.578 -3.872 1.328 0.071 N6 A1CB0 16 A1CB0 C9 C14 C 0 1 Y N N N N N -17.555 -2.449 21.016 -3.719 -1.352 -0.199 C9 A1CB0 17 A1CB0 N10 N3 N 0 1 Y N N N N N -17.937 -3.020 22.166 -4.875 -0.718 -0.291 N10 A1CB0 18 A1CB0 C11 C15 C 0 1 Y N N N N N -15.777 -1.594 19.416 -1.238 -1.279 0.153 C11 A1CB0 19 A1CB0 C14 C16 C 0 1 Y N N N N N -14.673 -0.337 17.231 1.154 -2.523 0.380 C14 A1CB0 20 A1CB0 C16 C17 C 0 1 Y N N N N N -16.553 -1.270 18.277 -1.177 -2.544 0.738 C16 A1CB0 21 A1CB0 F17 F1 F 0 1 N N N N N N -17.890 -1.444 18.303 -2.310 -3.130 1.183 F17 A1CB0 22 A1CB0 N18 N4 N 0 1 Y N N N N N -13.801 0.245 16.307 2.462 -2.841 0.349 N18 A1CB0 23 A1CB0 C19 C18 C 0 1 Y N N N N N -12.637 0.256 16.917 3.122 -1.870 -0.198 C19 A1CB0 24 A1CB0 N21 N5 N 0 1 N N R N N N -10.216 0.232 17.122 4.780 -0.380 -0.763 N21 A1CB0 25 A1CB0 C23 C19 C 0 1 N N S N N N -11.497 -0.476 19.040 2.654 0.363 -1.316 C23 A1CB0 26 A1CB0 C25 C20 C 0 1 Y N N N N N -11.264 -2.929 19.726 1.924 2.321 0.053 C25 A1CB0 27 A1CB0 C27 C21 C 0 1 Y N N N N N -9.918 -4.435 18.436 3.468 3.630 1.351 C27 A1CB0 28 A1CB0 C29 C22 C 0 1 Y N N N N N -10.156 -2.140 17.736 4.222 1.667 0.209 C29 A1CB0 29 A1CB0 C30 C23 C 0 1 N N N N N N -9.923 -1.088 16.718 5.275 0.642 -0.061 C30 A1CB0 30 A1CB0 O31 O2 O 0 1 N N N N N N -9.610 -1.334 15.568 6.430 0.727 0.309 O31 A1CB0 31 A1CB0 N32 N6 N 0 1 Y N N N N N -12.678 -0.276 18.181 2.271 -0.865 -0.591 N32 A1CB0 32 A1CB0 H40 H1 H 0 1 N N N N N N -14.293 -3.063 21.124 -1.804 1.383 0.363 H40 A1CB0 33 A1CB0 H42 H2 H 0 1 N N N N N N -16.616 -0.481 16.276 0.109 -4.188 1.318 H42 A1CB0 34 A1CB0 H44 H3 H 0 1 N N N N N N -11.253 0.427 15.309 5.162 -1.981 0.553 H44 A1CB0 35 A1CB0 H43 H4 H 0 1 N N N N N N -11.331 1.854 16.397 4.982 -2.436 -1.176 H43 A1CB0 36 A1CB0 H46 H5 H 0 1 N N N N N N -9.458 0.236 19.089 4.463 0.907 -2.454 H46 A1CB0 37 A1CB0 H45 H6 H 0 1 N N N N N N -10.683 1.502 18.738 3.930 -0.796 -2.692 H45 A1CB0 38 A1CB0 H49 H7 H 0 1 N N N N N N -10.959 -4.991 20.212 1.387 4.067 1.159 H49 A1CB0 39 A1CB0 H51 H8 H 0 1 N N N N N N -8.981 -3.608 16.696 5.494 2.938 1.382 H51 A1CB0 40 A1CB0 H35 H9 H 0 1 N N N N N N -15.925 -3.180 25.467 -7.081 3.267 -0.155 H35 A1CB0 41 A1CB0 H34 H10 H 0 1 N N N N N N -16.685 -4.612 26.241 -5.680 2.976 0.904 H34 A1CB0 42 A1CB0 H33 H11 H 0 1 N N N N N N -15.443 -4.835 24.962 -5.445 3.165 -0.850 H33 A1CB0 43 A1CB0 H38 H12 H 0 1 N N N N N N -18.663 -5.609 23.233 -6.222 1.379 -2.415 H38 A1CB0 44 A1CB0 H36 H13 H 0 1 N N N N N N -17.041 -6.251 23.658 -7.010 -0.083 -1.776 H36 A1CB0 45 A1CB0 H37 H14 H 0 1 N N N N N N -18.282 -6.028 24.937 -7.858 1.481 -1.720 H37 A1CB0 46 A1CB0 H39 H15 H 0 1 N N N N N N -19.191 -3.432 24.175 -6.835 0.902 1.649 H39 A1CB0 47 A1CB0 H41 H16 H 0 1 N N N N N N -18.314 -1.996 20.395 -3.672 -2.426 -0.309 H41 A1CB0 48 A1CB0 H47 H17 H 0 1 N N N N N N -11.731 -0.288 20.098 1.904 0.666 -2.047 H47 A1CB0 49 A1CB0 H48 H18 H 0 1 N N N N N N -11.904 -2.749 20.577 0.920 2.153 -0.308 H48 A1CB0 50 A1CB0 H50 H19 H 0 1 N N N N N N -9.507 -5.422 18.281 3.667 4.486 1.979 H50 A1CB0 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CB0 C1 C2 SING N N 1 A1CB0 C2 C3 SING N N 2 A1CB0 C2 O4 SING N N 3 A1CB0 C2 C5 SING N N 4 A1CB0 C5 N10 DOUB Y N 5 A1CB0 C5 N6 SING Y N 6 A1CB0 N6 C7 DOUB Y N 7 A1CB0 C7 C8 SING Y N 8 A1CB0 C8 C9 DOUB Y N 9 A1CB0 C8 C11 SING N N 10 A1CB0 C9 N10 SING Y N 11 A1CB0 C11 C16 DOUB Y N 12 A1CB0 C11 N12 SING Y N 13 A1CB0 N12 C13 DOUB Y N 14 A1CB0 C13 N32 SING Y N 15 A1CB0 C13 C14 SING Y N 16 A1CB0 C14 C15 DOUB Y N 17 A1CB0 C14 N18 SING Y N 18 A1CB0 C15 C16 SING Y N 19 A1CB0 C16 F17 SING N N 20 A1CB0 N18 C19 DOUB Y N 21 A1CB0 C19 N32 SING Y N 22 A1CB0 C19 C20 SING N N 23 A1CB0 C20 N21 SING N N 24 A1CB0 N21 C30 SING N N 25 A1CB0 N21 C22 SING N N 26 A1CB0 C22 C23 SING N N 27 A1CB0 C23 C24 SING N N 28 A1CB0 C23 N32 SING N N 29 A1CB0 C24 C29 SING Y N 30 A1CB0 C24 C25 DOUB Y N 31 A1CB0 C25 C26 SING Y N 32 A1CB0 C26 C27 DOUB Y N 33 A1CB0 C27 C28 SING Y N 34 A1CB0 C28 C29 DOUB Y N 35 A1CB0 C29 C30 SING N N 36 A1CB0 C30 O31 DOUB N N 37 A1CB0 C7 H40 SING N N 38 A1CB0 C15 H42 SING N N 39 A1CB0 C20 H44 SING N N 40 A1CB0 C20 H43 SING N N 41 A1CB0 C22 H46 SING N N 42 A1CB0 C22 H45 SING N N 43 A1CB0 C26 H49 SING N N 44 A1CB0 C28 H51 SING N N 45 A1CB0 C1 H35 SING N N 46 A1CB0 C1 H34 SING N N 47 A1CB0 C1 H33 SING N N 48 A1CB0 C3 H38 SING N N 49 A1CB0 C3 H36 SING N N 50 A1CB0 C3 H37 SING N N 51 A1CB0 O4 H39 SING N N 52 A1CB0 C9 H41 SING N N 53 A1CB0 C23 H47 SING N N 54 A1CB0 C25 H48 SING N N 55 A1CB0 C27 H50 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CB0 SMILES ACDLabs 14.52 "CC(C)(O)c1ncc(cn1)c1nc2c(nc3CN4CC(n23)c2ccccc2C4=O)cc1F" A1CB0 InChI InChI 1.06 "InChI=1S/C23H19FN6O2/c1-23(2,32)22-25-8-12(9-26-22)19-15(24)7-16-20(28-19)30-17-10-29(11-18(30)27-16)21(31)14-6-4-3-5-13(14)17/h3-9,17,32H,10-11H2,1-2H3/t17-/m0/s1" A1CB0 InChIKey InChI 1.06 VPMAXCQXHCHKNY-KRWDZBQOSA-N A1CB0 SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)c1ncc(cn1)c2nc3n4[C@@H]5C[N@](Cc4nc3cc2F)C(=O)c6ccccc56" A1CB0 SMILES CACTVS 3.385 "CC(C)(O)c1ncc(cn1)c2nc3n4[CH]5C[N](Cc4nc3cc2F)C(=O)c6ccccc56" A1CB0 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)(c1ncc(cn1)c2c(cc3c(n2)n4c(n3)CN5C[C@@H]4c6ccccc6C5=O)F)O" A1CB0 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)(c1ncc(cn1)c2c(cc3c(n2)n4c(n3)CN5CC4c6ccccc6C5=O)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CB0 "SYSTEMATIC NAME" ACDLabs 14.52 "(6R,13R,14R)-10-fluoro-11-[2-(2-hydroxypropan-2-yl)pyrimidin-5-yl]-7H-6,14-methanopyrido[3',2':4,5]imidazo[1,2-b][2,5]benzodiazocin-5(14H)-one" A1CB0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{S})-6-fluoranyl-5-[2-(2-oxidanylpropan-2-yl)pyrimidin-5-yl]-2,4,9,12-tetrazapentacyclo[10.7.1.0^{2,10}.0^{3,8}.0^{14,19}]icosa-3,5,7,9,14,16,18-heptaen-13-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CB0 "Create component" 2025-05-09 RCSB A1CB0 "Initial release" 2025-07-23 RCSB #