data_A1CB1 # _chem_comp.id A1CB1 _chem_comp.name "2-{5-[(1S,10S)-1-phenyl-1,2,3,4-tetrahydropyrido[1,2-a][1,3]benzimidazol-8-yl]pyrimidin-2-yl}propan-2-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H24 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-09 _chem_comp.pdbx_modified_date 2025-07-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 384.474 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CB1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9OJO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CB1 C5 C1 C 0 1 Y N N N N N -18.731 -2.098 22.083 4.380 0.147 -0.128 C5 A1CB1 1 A1CB1 C7 C2 C 0 1 Y N N N N N -18.444 -0.683 20.334 2.914 1.832 0.412 C7 A1CB1 2 A1CB1 C8 C3 C 0 1 Y N N N N N -17.171 -1.181 20.097 1.849 1.001 0.056 C8 A1CB1 3 A1CB1 C13 C4 C 0 1 Y N N N N N -16.097 0.060 16.697 -1.105 3.222 0.697 C13 A1CB1 4 A1CB1 C17 C5 C 0 1 N N N N N N -11.325 1.311 16.325 -5.571 1.213 -0.234 C17 A1CB1 5 A1CB1 C20 C6 C 0 1 N N R N N N -11.835 0.416 19.147 -3.415 -0.835 -0.861 C20 A1CB1 6 A1CB1 C21 C7 C 0 1 Y N N N N N -11.526 -0.971 19.678 -2.538 -1.828 -0.142 C21 A1CB1 7 A1CB1 C22 C8 C 0 1 Y N N N N N -11.084 -1.142 20.987 -2.624 -1.959 1.231 C22 A1CB1 8 A1CB1 C24 C9 C 0 1 Y N N N N N -10.939 -3.514 20.663 -0.930 -3.651 1.176 C24 A1CB1 9 A1CB1 C26 C10 C 0 1 Y N N N N N -11.669 -2.092 18.870 -1.653 -2.613 -0.858 C26 A1CB1 10 A1CB1 C28 C11 C 0 1 Y N N N N N -14.200 0.053 18.179 -1.906 1.077 -0.106 C28 A1CB1 11 A1CB1 C1 C12 C 0 1 N N N N N N -21.057 -2.124 23.125 6.753 0.780 0.218 C1 A1CB1 12 A1CB1 C2 C13 C 0 1 N N N N N N -19.609 -2.585 23.243 5.805 -0.331 -0.237 C2 A1CB1 13 A1CB1 C3 C14 C 0 1 N N N N N N -19.006 -2.102 24.557 5.999 -1.562 0.651 C3 A1CB1 14 A1CB1 O4 O1 O 0 1 N N N N N N -19.638 -4.027 23.242 6.089 -0.674 -1.595 O4 A1CB1 15 A1CB1 N6 N1 N 0 1 Y N N N N N -19.237 -1.124 21.313 4.149 1.370 0.306 N6 A1CB1 16 A1CB1 C9 C15 C 0 1 Y N N N N N -16.760 -2.194 20.959 2.141 -0.287 -0.400 C9 A1CB1 17 A1CB1 N10 N2 N 0 1 Y N N N N N -17.524 -2.661 21.960 3.404 -0.669 -0.475 N10 A1CB1 18 A1CB1 C11 C16 C 0 1 Y N N N N N -16.322 -0.658 19.011 0.447 1.474 0.158 C11 A1CB1 19 A1CB1 C12 C17 C 0 1 Y N N N N N -16.871 -0.407 17.744 0.179 2.773 0.602 C12 A1CB1 20 A1CB1 C14 C18 C 0 1 Y N N N N N -14.740 0.295 16.917 -2.168 2.384 0.348 C14 A1CB1 21 A1CB1 N15 N3 N 0 1 Y N N N N N -13.749 0.767 16.049 -3.517 2.542 0.342 N15 A1CB1 22 A1CB1 C16 C19 C 0 1 Y N N N N N -12.659 0.807 16.780 -4.086 1.451 -0.076 C16 A1CB1 23 A1CB1 C18 C20 C 0 1 N N N N N N -10.206 0.910 17.270 -5.767 -0.024 -1.118 C18 A1CB1 24 A1CB1 C19 C21 C 0 1 N N N N N N -10.602 1.212 18.713 -4.888 -1.164 -0.595 C19 A1CB1 25 A1CB1 C23 C22 C 0 1 Y N N N N N -10.792 -2.409 21.474 -1.819 -2.870 1.890 C23 A1CB1 26 A1CB1 C25 C23 C 0 1 Y N N N N N -11.376 -3.358 19.361 -0.849 -3.524 -0.199 C25 A1CB1 27 A1CB1 N27 N4 N 0 1 Y N N N N N -12.855 0.391 18.069 -3.135 0.515 -0.366 N27 A1CB1 28 A1CB1 C29 C24 C 0 1 Y N N N N N -14.963 -0.422 19.232 -0.598 0.630 -0.203 C29 A1CB1 29 A1CB1 H38 H1 H 0 1 N N N N N N -18.813 0.103 19.692 2.733 2.835 0.769 H38 A1CB1 30 A1CB1 H41 H2 H 0 1 N N N N N N -16.536 0.239 15.727 -1.301 4.225 1.045 H41 A1CB1 31 A1CB1 H43 H3 H 0 1 N N N N N N -11.112 0.898 15.328 -6.022 1.042 0.743 H43 A1CB1 32 A1CB1 H42 H4 H 0 1 N N N N N N -11.363 2.409 16.266 -6.034 2.080 -0.706 H42 A1CB1 33 A1CB1 H30 H5 H 0 1 N N N N N N -12.278 0.974 19.985 -3.217 -0.880 -1.931 H30 A1CB1 34 A1CB1 H48 H6 H 0 1 N N N N N N -10.967 -0.282 21.629 -3.318 -1.349 1.790 H48 A1CB1 35 A1CB1 H50 H7 H 0 1 N N N N N N -10.713 -4.499 21.044 -0.302 -4.363 1.690 H50 A1CB1 36 A1CB1 H52 H8 H 0 1 N N N N N N -12.011 -1.978 17.852 -1.590 -2.514 -1.931 H52 A1CB1 37 A1CB1 H33 H9 H 0 1 N N N N N N -21.479 -2.479 22.173 7.783 0.435 0.138 H33 A1CB1 38 A1CB1 H31 H10 H 0 1 N N N N N N -21.642 -2.535 23.961 6.614 1.657 -0.415 H31 A1CB1 39 A1CB1 H32 H11 H 0 1 N N N N N N -21.095 -1.025 23.156 6.536 1.042 1.253 H32 A1CB1 40 A1CB1 H36 H12 H 0 1 N N N N N N -17.962 -2.441 24.629 5.782 -1.301 1.686 H36 A1CB1 41 A1CB1 H35 H13 H 0 1 N N N N N N -19.037 -1.003 24.593 5.324 -2.354 0.326 H35 A1CB1 42 A1CB1 H34 H14 H 0 1 N N N N N N -19.584 -2.513 25.398 7.030 -1.908 0.572 H34 A1CB1 43 A1CB1 H37 H15 H 0 1 N N N N N N -18.752 -4.362 23.314 5.987 0.060 -2.216 H37 A1CB1 44 A1CB1 H39 H16 H 0 1 N N N N N N -15.780 -2.625 20.816 1.347 -0.961 -0.685 H39 A1CB1 45 A1CB1 H40 H17 H 0 1 N N N N N N -17.924 -0.583 17.582 0.997 3.425 0.873 H40 A1CB1 46 A1CB1 H44 H18 H 0 1 N N N N N N -10.010 -0.167 17.165 -6.814 -0.329 -1.090 H44 A1CB1 47 A1CB1 H45 H19 H 0 1 N N N N N N -9.297 1.475 17.017 -5.485 0.213 -2.144 H45 A1CB1 48 A1CB1 H47 H20 H 0 1 N N N N N N -9.761 0.953 19.374 -5.152 -2.090 -1.105 H47 A1CB1 49 A1CB1 H46 H21 H 0 1 N N N N N N -10.822 2.286 18.804 -5.047 -1.282 0.477 H46 A1CB1 50 A1CB1 H49 H22 H 0 1 N N N N N N -10.449 -2.529 22.491 -1.885 -2.971 2.964 H49 A1CB1 51 A1CB1 H51 H23 H 0 1 N N N N N N -11.490 -4.223 18.724 -0.155 -4.134 -0.757 H51 A1CB1 52 A1CB1 H53 H24 H 0 1 N N N N N N -14.519 -0.605 20.199 -0.391 -0.371 -0.550 H53 A1CB1 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CB1 C1 C2 SING N N 1 A1CB1 C2 C3 SING N N 2 A1CB1 C2 O4 SING N N 3 A1CB1 C2 C5 SING N N 4 A1CB1 C5 N10 DOUB Y N 5 A1CB1 C5 N6 SING Y N 6 A1CB1 N6 C7 DOUB Y N 7 A1CB1 C7 C8 SING Y N 8 A1CB1 C8 C9 DOUB Y N 9 A1CB1 C8 C11 SING N N 10 A1CB1 C9 N10 SING Y N 11 A1CB1 C11 C29 SING Y N 12 A1CB1 C11 C12 DOUB Y N 13 A1CB1 C12 C13 SING Y N 14 A1CB1 C13 C14 DOUB Y N 15 A1CB1 C14 C28 SING Y N 16 A1CB1 C14 N15 SING Y N 17 A1CB1 N15 C16 DOUB Y N 18 A1CB1 C16 N27 SING Y N 19 A1CB1 C16 C17 SING N N 20 A1CB1 C17 C18 SING N N 21 A1CB1 C18 C19 SING N N 22 A1CB1 C19 C20 SING N N 23 A1CB1 C20 C21 SING N N 24 A1CB1 C20 N27 SING N N 25 A1CB1 C21 C26 SING Y N 26 A1CB1 C21 C22 DOUB Y N 27 A1CB1 C22 C23 SING Y N 28 A1CB1 C23 C24 DOUB Y N 29 A1CB1 C24 C25 SING Y N 30 A1CB1 C25 C26 DOUB Y N 31 A1CB1 N27 C28 SING Y N 32 A1CB1 C28 C29 DOUB Y N 33 A1CB1 C7 H38 SING N N 34 A1CB1 C13 H41 SING N N 35 A1CB1 C17 H43 SING N N 36 A1CB1 C17 H42 SING N N 37 A1CB1 C20 H30 SING N N 38 A1CB1 C22 H48 SING N N 39 A1CB1 C24 H50 SING N N 40 A1CB1 C26 H52 SING N N 41 A1CB1 C1 H33 SING N N 42 A1CB1 C1 H31 SING N N 43 A1CB1 C1 H32 SING N N 44 A1CB1 C3 H36 SING N N 45 A1CB1 C3 H35 SING N N 46 A1CB1 C3 H34 SING N N 47 A1CB1 O4 H37 SING N N 48 A1CB1 C9 H39 SING N N 49 A1CB1 C12 H40 SING N N 50 A1CB1 C18 H44 SING N N 51 A1CB1 C18 H45 SING N N 52 A1CB1 C19 H47 SING N N 53 A1CB1 C19 H46 SING N N 54 A1CB1 C23 H49 SING N N 55 A1CB1 C25 H51 SING N N 56 A1CB1 C29 H53 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CB1 SMILES ACDLabs 14.52 "CC(C)(O)c1ncc(cn1)c1ccc2nc3CCCC(c4ccccc4)n3c2c1" A1CB1 InChI InChI 1.06 "InChI=1S/C24H24N4O/c1-24(2,29)23-25-14-18(15-26-23)17-11-12-19-21(13-17)28-20(9-6-10-22(28)27-19)16-7-4-3-5-8-16/h3-5,7-8,11-15,20,29H,6,9-10H2,1-2H3/t20-/m0/s1" A1CB1 InChIKey InChI 1.06 HABFRLSNUHRSCC-FQEVSTJZSA-N A1CB1 SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)c1ncc(cn1)c2ccc3nc4CCC[C@@H](n4c3c2)c5ccccc5" A1CB1 SMILES CACTVS 3.385 "CC(C)(O)c1ncc(cn1)c2ccc3nc4CCC[CH](n4c3c2)c5ccccc5" A1CB1 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)(c1ncc(cn1)c2ccc3c(c2)n4c(n3)CCC[C@@H]4c5ccccc5)O" A1CB1 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)(c1ncc(cn1)c2ccc3c(c2)n4c(n3)CCCC4c5ccccc5)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CB1 "SYSTEMATIC NAME" ACDLabs 14.52 "2-{5-[(1S,10S)-1-phenyl-1,2,3,4-tetrahydropyrido[1,2-a][1,3]benzimidazol-8-yl]pyrimidin-2-yl}propan-2-ol" A1CB1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[5-[(1~{R})-1-phenyl-1,2,3,4-tetrahydropyrido[1,2-a]benzimidazol-8-yl]pyrimidin-2-yl]propan-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CB1 "Create component" 2025-05-09 RCSB A1CB1 "Initial release" 2025-07-23 RCSB #