data_A1CBG # _chem_comp.id A1CBG _chem_comp.name "(3S)-3-[(5M)-5-{1-(oxetan-3-yl)-4-[(pyrrolidin-1-yl)methyl]-1H-pyrrolo[2,3-b]pyridin-6-yl}-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H29 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-06 _chem_comp.pdbx_modified_date 2025-08-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 499.561 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CBG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9OHR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CBG N1 N1 N 0 1 N N N N N N -13.134 -10.818 5.960 -7.703 0.318 -1.171 N1 A1CBG 1 A1CBG N3 N2 N 0 1 N N N N N N -24.057 -13.577 6.598 5.525 2.554 -0.101 N3 A1CBG 2 A1CBG C4 C1 C 0 1 N N N N N N -12.134 -12.384 7.555 -8.021 -0.641 1.097 C4 A1CBG 3 A1CBG C5 C2 C 0 1 N N N N N N -12.154 -11.764 6.196 -8.523 0.052 -0.142 C5 A1CBG 4 A1CBG C6 C3 C 0 1 N N N N N N -16.638 -11.517 8.005 -3.217 -1.188 0.088 C6 A1CBG 5 A1CBG C7 C4 C 0 1 Y N N N N N -17.741 -11.329 9.002 -1.998 -0.316 0.265 C7 A1CBG 6 A1CBG C8 C5 C 0 1 Y N N N N N -17.245 -10.749 10.152 -2.467 0.993 0.414 C8 A1CBG 7 A1CBG C10 C6 C 0 1 Y N N N N N -19.419 -10.785 11.147 -0.205 1.770 0.633 C10 A1CBG 8 A1CBG C13 C7 C 0 1 Y N N N N N -21.850 -12.730 8.995 2.603 1.218 0.810 C13 A1CBG 9 A1CBG C15 C8 C 0 1 N N N N N N -23.751 -14.030 7.965 4.937 2.057 1.149 C15 A1CBG 10 A1CBG C17 C9 C 0 1 N N N N N N -26.244 -13.140 5.795 6.661 4.534 -0.928 C17 A1CBG 11 A1CBG C20 C10 C 0 1 Y N N N N N -24.063 -12.096 9.628 4.380 -0.341 0.575 C20 A1CBG 12 A1CBG C21 C11 C 0 1 Y N N N N N -23.487 -11.112 10.431 3.432 -1.347 0.298 C21 A1CBG 13 A1CBG C22 C12 C 0 1 Y N N N N N -25.476 -11.980 9.791 5.690 -0.990 0.523 C22 A1CBG 14 A1CBG C24 C13 C 0 1 N N N N N N -24.330 -9.342 12.020 3.528 -3.810 -0.220 C24 A1CBG 15 A1CBG C26 C14 C 0 1 N N N N N N -23.994 -9.782 13.474 4.252 -5.006 0.426 C26 A1CBG 16 A1CBG C28 C15 C 0 1 N N N N N N -15.802 -10.523 9.961 -3.940 0.968 0.336 C28 A1CBG 17 A1CBG O1 O1 O 0 1 N N N N N N -14.734 -9.391 6.590 -5.711 0.277 -2.116 O1 A1CBG 18 A1CBG C1 C16 C 0 1 N N N N N N -14.055 -10.345 6.865 -6.400 -0.001 -1.158 C1 A1CBG 19 A1CBG C2 C17 C 0 1 N N S N N N -14.125 -11.023 8.221 -5.778 -0.697 0.023 C2 A1CBG 20 A1CBG C3 C18 C 0 1 N N N N N N -13.496 -12.403 8.236 -6.539 -0.308 1.295 C3 A1CBG 21 A1CBG O2 O2 O 0 1 N N N N N N -11.328 -12.019 5.333 -9.689 0.376 -0.212 O2 A1CBG 22 A1CBG N2 N3 N 0 1 N N N N N N -15.480 -11.005 8.730 -4.376 -0.290 0.148 N2 A1CBG 23 A1CBG C9 C19 C 0 1 Y N N N N N -18.066 -10.469 11.244 -1.555 2.036 0.599 C9 A1CBG 24 A1CBG C11 C20 C 0 1 Y N N N N N -19.927 -11.432 10.016 0.258 0.463 0.483 C11 A1CBG 25 A1CBG C12 C21 C 0 1 Y N N N N N -21.367 -11.738 9.885 1.712 0.181 0.520 C12 A1CBG 26 A1CBG C14 C22 C 0 1 Y N N N N N -23.208 -12.948 8.868 3.948 0.962 0.840 C14 A1CBG 27 A1CBG C16 C23 C 0 1 N N N N N N -25.073 -12.505 6.503 6.666 3.455 0.171 C16 A1CBG 28 A1CBG C18 C24 C 0 1 N N N N N N -25.563 -14.108 4.849 5.436 4.205 -1.812 C18 A1CBG 29 A1CBG C19 C25 C 0 1 N N N N N N -24.417 -14.668 5.672 4.543 3.364 -0.866 C19 A1CBG 30 A1CBG N4 N4 N 0 1 Y N N N N N -22.187 -10.906 10.556 2.142 -1.048 0.276 N4 A1CBG 31 A1CBG C23 C26 C 0 1 Y N N N N N -25.700 -10.971 10.658 5.474 -2.284 0.234 C23 A1CBG 32 A1CBG N5 N5 N 0 1 Y N N N N N -24.500 -10.426 11.060 4.131 -2.513 0.096 N5 A1CBG 33 A1CBG C25 C27 C 0 1 N N N N N N -25.602 -8.761 12.716 3.991 -4.400 -1.565 C25 A1CBG 34 A1CBG O3 O3 O 0 1 N N N N N N -25.423 -9.777 13.737 4.090 -5.650 -0.854 O3 A1CBG 35 A1CBG C27 C28 C 0 1 Y N N N N N -19.085 -11.640 8.914 -0.652 -0.581 0.299 C27 A1CBG 36 A1CBG O4 O4 O 0 1 N N N N N N -15.002 -10.031 10.749 -4.657 1.945 0.428 O4 A1CBG 37 A1CBG H1 H1 H 0 1 N N N N N N -13.178 -10.439 5.036 -8.068 0.755 -1.956 H1 A1CBG 38 A1CBG H3 H3 H 0 1 N N N N N N -11.778 -13.421 7.459 -8.590 -0.298 1.962 H3 A1CBG 39 A1CBG H4 H4 H 0 1 N N N N N N -11.437 -11.814 8.187 -8.141 -1.719 0.987 H4 A1CBG 40 A1CBG H5 H5 H 0 1 N N N N N N -16.824 -10.937 7.089 -3.181 -1.689 -0.879 H5 A1CBG 41 A1CBG H6 H6 H 0 1 N N N N N N -16.510 -12.579 7.747 -3.271 -1.923 0.891 H6 A1CBG 42 A1CBG H7 H7 H 0 1 N N N N N N -20.085 -10.527 11.957 0.499 2.577 0.775 H7 A1CBG 43 A1CBG H8 H8 H 0 1 N N N N N N -21.154 -13.317 8.414 2.234 2.214 1.005 H8 A1CBG 44 A1CBG H9 H9 H 0 1 N N N N N N -24.676 -14.422 8.414 5.726 1.663 1.790 H9 A1CBG 45 A1CBG H10 H10 H 0 1 N N N N N N -23.004 -14.835 7.903 4.427 2.873 1.661 H10 A1CBG 46 A1CBG H11 H11 H 0 1 N N N N N N -26.830 -12.390 5.244 6.554 5.524 -0.486 H11 A1CBG 47 A1CBG H12 H12 H 0 1 N N N N N N -26.899 -13.669 6.503 7.578 4.480 -1.515 H12 A1CBG 48 A1CBG H13 H13 H 0 1 N N N N N N -26.227 -12.588 9.309 6.648 -0.520 0.687 H13 A1CBG 49 A1CBG H14 H14 H 0 1 N N N N N N -23.658 -8.546 11.667 2.447 -3.823 -0.083 H14 A1CBG 50 A1CBG H15 H15 H 0 1 N N N N N N -23.516 -10.769 13.556 5.290 -4.804 0.689 H15 A1CBG 51 A1CBG H16 H16 H 0 1 N N N N N N -23.418 -9.046 14.055 3.690 -5.479 1.232 H16 A1CBG 52 A1CBG H17 H17 H 0 1 N N N N N N -13.520 -10.405 8.902 -5.833 -1.776 -0.119 H17 A1CBG 53 A1CBG H18 H18 H 0 1 N N N N N N -14.155 -13.105 7.705 -6.425 0.761 1.478 H18 A1CBG 54 A1CBG H19 H19 H 0 1 N N N N N N -13.373 -12.732 9.278 -6.147 -0.871 2.142 H19 A1CBG 55 A1CBG H20 H20 H 0 1 N N N N N N -17.664 -10.020 12.140 -1.910 3.049 0.714 H20 A1CBG 56 A1CBG H21 H21 H 0 1 N N N N N N -24.685 -11.655 5.923 6.546 3.921 1.149 H21 A1CBG 57 A1CBG H22 H22 H 0 1 N N N N N N -25.367 -12.161 7.506 7.599 2.894 0.136 H22 A1CBG 58 A1CBG H23 H23 H 0 1 N N N N N N -25.187 -13.586 3.957 4.924 5.118 -2.116 H23 A1CBG 59 A1CBG H24 H24 H 0 1 N N N N N N -26.253 -14.908 4.542 5.734 3.621 -2.682 H24 A1CBG 60 A1CBG H25 H25 H 0 1 N N N N N N -24.739 -15.560 6.229 3.876 2.720 -1.439 H25 A1CBG 61 A1CBG H26 H26 H 0 1 N N N N N N -23.565 -14.926 5.026 3.974 4.011 -0.198 H26 A1CBG 62 A1CBG H27 H27 H 0 1 N N N N N N -26.674 -10.640 10.988 6.245 -3.033 0.125 H27 A1CBG 63 A1CBG H28 H28 H 0 1 N N N N N N -25.498 -7.726 13.074 3.223 -4.392 -2.338 H28 A1CBG 64 A1CBG H29 H29 H 0 1 N N N N N N -26.529 -8.855 12.132 4.950 -4.013 -1.910 H29 A1CBG 65 A1CBG H30 H30 H 0 1 N N N N N N -19.487 -12.043 7.996 -0.297 -1.595 0.183 H30 A1CBG 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CBG C18 C19 SING N N 1 A1CBG C18 C17 SING N N 2 A1CBG O2 C5 DOUB N N 3 A1CBG C19 N3 SING N N 4 A1CBG C17 C16 SING N N 5 A1CBG N1 C5 SING N N 6 A1CBG N1 C1 SING N N 7 A1CBG C5 C4 SING N N 8 A1CBG C16 N3 SING N N 9 A1CBG O1 C1 DOUB N N 10 A1CBG N3 C15 SING N N 11 A1CBG C1 C2 SING N N 12 A1CBG C4 C3 SING N N 13 A1CBG C15 C14 SING N N 14 A1CBG C6 N2 SING N N 15 A1CBG C6 C7 SING N N 16 A1CBG C2 C3 SING N N 17 A1CBG C2 N2 SING N N 18 A1CBG N2 C28 SING N N 19 A1CBG C14 C13 DOUB Y N 20 A1CBG C14 C20 SING Y N 21 A1CBG C27 C7 DOUB Y N 22 A1CBG C27 C11 SING Y N 23 A1CBG C13 C12 SING Y N 24 A1CBG C7 C8 SING Y N 25 A1CBG C20 C22 SING Y N 26 A1CBG C20 C21 DOUB Y N 27 A1CBG C22 C23 DOUB Y N 28 A1CBG C12 C11 SING N N 29 A1CBG C12 N4 DOUB Y N 30 A1CBG C28 C8 SING N N 31 A1CBG C28 O4 DOUB N N 32 A1CBG C11 C10 DOUB Y N 33 A1CBG C8 C9 DOUB Y N 34 A1CBG C21 N4 SING Y N 35 A1CBG C21 N5 SING Y N 36 A1CBG C23 N5 SING Y N 37 A1CBG N5 C24 SING N N 38 A1CBG C10 C9 SING Y N 39 A1CBG C24 C25 SING N N 40 A1CBG C24 C26 SING N N 41 A1CBG C25 O3 SING N N 42 A1CBG C26 O3 SING N N 43 A1CBG N1 H1 SING N N 44 A1CBG C4 H3 SING N N 45 A1CBG C4 H4 SING N N 46 A1CBG C6 H5 SING N N 47 A1CBG C6 H6 SING N N 48 A1CBG C10 H7 SING N N 49 A1CBG C13 H8 SING N N 50 A1CBG C15 H9 SING N N 51 A1CBG C15 H10 SING N N 52 A1CBG C17 H11 SING N N 53 A1CBG C17 H12 SING N N 54 A1CBG C22 H13 SING N N 55 A1CBG C24 H14 SING N N 56 A1CBG C26 H15 SING N N 57 A1CBG C26 H16 SING N N 58 A1CBG C2 H17 SING N N 59 A1CBG C3 H18 SING N N 60 A1CBG C3 H19 SING N N 61 A1CBG C9 H20 SING N N 62 A1CBG C16 H21 SING N N 63 A1CBG C16 H22 SING N N 64 A1CBG C18 H23 SING N N 65 A1CBG C18 H24 SING N N 66 A1CBG C19 H25 SING N N 67 A1CBG C19 H26 SING N N 68 A1CBG C23 H27 SING N N 69 A1CBG C25 H28 SING N N 70 A1CBG C25 H29 SING N N 71 A1CBG C27 H30 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CBG SMILES ACDLabs 14.52 "O=C1NC(=O)CCC1N1Cc2cc(ccc2C1=O)c1cc(CN2CCCC2)c2ccn(c2n1)C1COC1" A1CBG InChI InChI 1.06 "InChI=1S/C28H29N5O4/c34-25-6-5-24(27(35)30-25)33-14-18-11-17(3-4-22(18)28(33)36)23-12-19(13-31-8-1-2-9-31)21-7-10-32(26(21)29-23)20-15-37-16-20/h3-4,7,10-12,20,24H,1-2,5-6,8-9,13-16H2,(H,30,34,35)/t24-/m0/s1" A1CBG InChIKey InChI 1.06 OZSNWUQQBQCHTP-DEOSSOPVSA-N A1CBG SMILES_CANONICAL CACTVS 3.385 "O=C1CC[C@H](N2Cc3cc(ccc3C2=O)c4cc(CN5CCCC5)c6ccn(C7COC7)c6n4)C(=O)N1" A1CBG SMILES CACTVS 3.385 "O=C1CC[CH](N2Cc3cc(ccc3C2=O)c4cc(CN5CCCC5)c6ccn(C7COC7)c6n4)C(=O)N1" A1CBG SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1c3cc(c4ccn(c4n3)C5COC5)CN6CCCC6)CN(C2=O)[C@H]7CCC(=O)NC7=O" A1CBG SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1c3cc(c4ccn(c4n3)C5COC5)CN6CCCC6)CN(C2=O)C7CCC(=O)NC7=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CBG "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-3-[(5M)-5-{1-(oxetan-3-yl)-4-[(pyrrolidin-1-yl)methyl]-1H-pyrrolo[2,3-b]pyridin-6-yl}-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione" A1CBG "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-3-[6-[1-(oxetan-3-yl)-4-(pyrrolidin-1-ylmethyl)pyrrolo[2,3-b]pyridin-6-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CBG "Create component" 2025-05-06 RCSB A1CBG "Initial release" 2025-09-03 RCSB #