data_A1CBH # _chem_comp.id A1CBH _chem_comp.name "(3S)-3-[(5M)-5-{1-methyl-4-[(pyrrolidin-1-yl)methyl]-1H-pyrrolo[2,3-b]pyridin-6-yl}-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H27 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-06 _chem_comp.pdbx_modified_date 2025-08-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.524 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CBH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9OHQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CBH O1 O1 O 0 1 N N N N N N 28.501 -7.000 3.396 5.697 -0.680 1.794 O1 A1CBH 1 A1CBH C1 C1 C 0 1 N N N N N N 27.408 -6.503 3.586 6.232 -0.376 0.750 C1 A1CBH 2 A1CBH C2 C2 C 0 1 N N S N N N 26.667 -5.765 2.490 5.463 -0.504 -0.538 C2 A1CBH 3 A1CBH N1 N1 N 0 1 N N N N N N 26.996 -6.361 1.203 4.038 -0.276 -0.282 N1 A1CBH 4 A1CBH C3 C3 C 0 1 N N N N N N 27.682 -5.713 0.224 3.505 0.847 0.226 C3 A1CBH 5 A1CBH O2 O2 O 0 1 N N N N N N 27.998 -4.511 0.289 4.138 1.834 0.546 O2 A1CBH 6 A1CBH C4 C4 C 0 1 N N N N N N 26.723 -7.764 0.878 2.960 -1.235 -0.546 C4 A1CBH 7 A1CBH C5 C5 C 0 1 Y N N N N N 27.234 -7.870 -0.525 1.680 -0.556 -0.125 C5 A1CBH 8 A1CBH C6 C6 C 0 1 Y N N N N N 27.808 -6.665 -0.883 2.040 0.712 0.341 C6 A1CBH 9 A1CBH C7 C7 C 0 1 Y N N N N N 28.370 -6.494 -2.136 1.051 1.584 0.805 C7 A1CBH 10 A1CBH C8 C8 C 0 1 Y N N N N N 28.305 -7.543 -3.030 -0.269 1.191 0.801 C8 A1CBH 11 A1CBH C9 C9 C 0 1 Y N N N N N 27.773 -8.789 -2.680 -0.623 -0.075 0.334 C9 A1CBH 12 A1CBH C10 C10 C 0 1 Y N N N N N 27.718 -9.877 -3.691 -2.044 -0.494 0.331 C10 A1CBH 13 A1CBH C11 C11 C 0 1 Y N N N N N 26.746 -10.907 -3.649 -3.030 0.427 0.699 C11 A1CBH 14 A1CBH C12 C12 C 0 1 Y N N N N N 26.725 -11.889 -4.640 -4.345 0.043 0.697 C12 A1CBH 15 A1CBH C13 C13 C 0 1 N N N N N N 25.681 -12.979 -4.618 -5.433 1.009 1.088 C13 A1CBH 16 A1CBH N2 N2 N 0 1 N N N N N N 26.011 -14.106 -3.760 -6.137 1.467 -0.118 N2 A1CBH 17 A1CBH C14 C14 C 0 1 N N N N N N 24.923 -15.058 -3.694 -7.419 2.107 0.230 C14 A1CBH 18 A1CBH C15 C15 C 0 1 N N N N N N 25.556 -16.294 -3.110 -7.394 3.532 -0.362 C15 A1CBH 19 A1CBH C16 C16 C 0 1 N N N N N N 27.014 -16.200 -3.541 -6.339 3.422 -1.494 C16 A1CBH 20 A1CBH C17 C17 C 0 1 N N N N N N 27.130 -14.865 -4.257 -5.316 2.438 -0.874 C17 A1CBH 21 A1CBH C18 C18 C 0 1 Y N N N N N 27.669 -11.769 -5.661 -4.651 -1.269 0.322 C18 A1CBH 22 A1CBH C19 C19 C 0 1 Y N N N N N 27.968 -12.534 -6.837 -5.893 -2.033 0.205 C19 A1CBH 23 A1CBH C20 C20 C 0 1 Y N N N N N 29.014 -11.928 -7.448 -5.555 -3.268 -0.199 C20 A1CBH 24 A1CBH N3 N3 N 0 1 Y N N N N N 29.358 -10.757 -6.750 -4.197 -3.355 -0.349 N3 A1CBH 25 A1CBH C21 C21 C 0 1 N N N N N N 30.425 -9.818 -7.078 -3.474 -4.555 -0.777 C21 A1CBH 26 A1CBH C22 C22 C 0 1 Y N N N N N 28.561 -10.690 -5.644 -3.612 -2.151 -0.039 C22 A1CBH 27 A1CBH N4 N4 N 0 1 Y N N N N N 28.617 -9.766 -4.695 -2.355 -1.731 -0.025 N4 A1CBH 28 A1CBH C23 C23 C 0 1 Y N N N N N 27.224 -8.948 -1.402 0.364 -0.947 -0.133 C23 A1CBH 29 A1CBH C24 C24 C 0 1 N N N N N N 25.159 -5.650 2.720 5.977 0.539 -1.537 C24 A1CBH 30 A1CBH C25 C25 C 0 1 N N N N N N 24.884 -5.179 4.146 7.489 0.352 -1.702 C25 A1CBH 31 A1CBH N5 N5 N 0 1 N N N N N N 26.762 -6.632 4.798 7.496 0.074 0.765 N5 A1CBH 32 A1CBH C26 C26 C 0 1 N N N N N N 25.547 -6.071 5.158 8.148 0.433 -0.351 C26 A1CBH 33 A1CBH O3 O3 O 0 1 N N N N N N 25.077 -6.317 6.251 9.288 0.836 -0.269 O3 A1CBH 34 A1CBH H1 H1 H 0 1 N N N N N N 27.059 -4.737 2.483 5.605 -1.503 -0.949 H1 A1CBH 35 A1CBH H2 H2 H 0 1 N N N N N N 25.646 -7.982 0.928 2.924 -1.477 -1.608 H2 A1CBH 36 A1CBH H3 H3 H 0 1 N N N N N N 27.266 -8.442 1.552 3.113 -2.142 0.040 H3 A1CBH 37 A1CBH H4 H4 H 0 1 N N N N N N 28.847 -5.564 -2.407 1.322 2.564 1.167 H4 A1CBH 38 A1CBH H5 H5 H 0 1 N N N N N N 28.677 -7.398 -4.033 -1.032 1.865 1.162 H5 A1CBH 39 A1CBH H6 H6 H 0 1 N N N N N N 26.021 -10.932 -2.849 -2.757 1.432 0.984 H6 A1CBH 40 A1CBH H7 H7 H 0 1 N N N N N N 24.735 -12.543 -4.265 -6.138 0.512 1.754 H7 A1CBH 41 A1CBH H8 H8 H 0 1 N N N N N N 25.552 -13.353 -5.644 -4.992 1.866 1.598 H8 A1CBH 42 A1CBH H10 H10 H 0 1 N N N N N N 24.117 -14.687 -3.044 -8.245 1.541 -0.200 H10 A1CBH 43 A1CBH H11 H11 H 0 1 N N N N N N 24.520 -15.262 -4.697 -7.526 2.158 1.314 H11 A1CBH 44 A1CBH H12 H12 H 0 1 N N N N N N 25.472 -16.295 -2.013 -8.370 3.797 -0.769 H12 A1CBH 45 A1CBH H13 H13 H 0 1 N N N N N N 25.086 -17.202 -3.515 -7.082 4.257 0.390 H13 A1CBH 46 A1CBH H14 H14 H 0 1 N N N N N N 27.270 -17.026 -4.221 -6.781 3.007 -2.400 H14 A1CBH 47 A1CBH H15 H15 H 0 1 N N N N N N 27.678 -16.227 -2.665 -5.879 4.389 -1.694 H15 A1CBH 48 A1CBH H16 H16 H 0 1 N N N N N N 27.059 -14.998 -5.347 -4.640 2.967 -0.203 H16 A1CBH 49 A1CBH H17 H17 H 0 1 N N N N N N 28.080 -14.369 -4.009 -4.755 1.930 -1.658 H17 A1CBH 50 A1CBH H18 H18 H 0 1 N N N N N N 27.456 -13.424 -7.172 -6.891 -1.672 0.404 H18 A1CBH 51 A1CBH H19 H19 H 0 1 N N N N N N 29.509 -12.290 -8.337 -6.252 -4.074 -0.379 H19 A1CBH 52 A1CBH H20 H20 H 0 1 N N N N N N 30.438 -9.004 -6.339 -3.385 -4.557 -1.864 H20 A1CBH 53 A1CBH H21 H21 H 0 1 N N N N N N 31.392 -10.342 -7.063 -2.480 -4.559 -0.331 H21 A1CBH 54 A1CBH H22 H22 H 0 1 N N N N N N 30.250 -9.400 -8.080 -4.021 -5.442 -0.457 H22 A1CBH 55 A1CBH H23 H23 H 0 1 N N N N N N 26.799 -9.894 -1.102 0.093 -1.927 -0.494 H23 A1CBH 56 A1CBH H24 H24 H 0 1 N N N N N N 24.736 -4.925 2.009 5.483 0.399 -2.499 H24 A1CBH 57 A1CBH H25 H25 H 0 1 N N N N N N 24.690 -6.633 2.564 5.771 1.540 -1.159 H25 A1CBH 58 A1CBH H26 H26 H 0 1 N N N N N N 25.269 -4.155 4.265 7.689 -0.623 -2.147 H26 A1CBH 59 A1CBH H27 H27 H 0 1 N N N N N N 23.798 -5.185 4.321 7.884 1.136 -2.348 H27 A1CBH 60 A1CBH H28 H28 H 0 1 N N N N N N 27.219 -7.190 5.491 7.958 0.137 1.615 H28 A1CBH 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CBH C20 C19 DOUB Y N 1 A1CBH C20 N3 SING Y N 2 A1CBH C21 N3 SING N N 3 A1CBH C19 C18 SING Y N 4 A1CBH N3 C22 SING Y N 5 A1CBH C18 C22 DOUB Y N 6 A1CBH C18 C12 SING Y N 7 A1CBH C22 N4 SING Y N 8 A1CBH N4 C10 DOUB Y N 9 A1CBH C12 C13 SING N N 10 A1CBH C12 C11 DOUB Y N 11 A1CBH C13 N2 SING N N 12 A1CBH C17 N2 SING N N 13 A1CBH C17 C16 SING N N 14 A1CBH N2 C14 SING N N 15 A1CBH C14 C15 SING N N 16 A1CBH C10 C11 SING Y N 17 A1CBH C10 C9 SING N N 18 A1CBH C16 C15 SING N N 19 A1CBH C8 C9 DOUB Y N 20 A1CBH C8 C7 SING Y N 21 A1CBH C9 C23 SING Y N 22 A1CBH C7 C6 DOUB Y N 23 A1CBH C23 C5 DOUB Y N 24 A1CBH C6 C5 SING Y N 25 A1CBH C6 C3 SING N N 26 A1CBH C5 C4 SING N N 27 A1CBH C3 O2 DOUB N N 28 A1CBH C3 N1 SING N N 29 A1CBH C4 N1 SING N N 30 A1CBH N1 C2 SING N N 31 A1CBH C2 C24 SING N N 32 A1CBH C2 C1 SING N N 33 A1CBH C24 C25 SING N N 34 A1CBH O1 C1 DOUB N N 35 A1CBH C1 N5 SING N N 36 A1CBH C25 C26 SING N N 37 A1CBH N5 C26 SING N N 38 A1CBH C26 O3 DOUB N N 39 A1CBH C2 H1 SING N N 40 A1CBH C4 H2 SING N N 41 A1CBH C4 H3 SING N N 42 A1CBH C7 H4 SING N N 43 A1CBH C8 H5 SING N N 44 A1CBH C11 H6 SING N N 45 A1CBH C13 H7 SING N N 46 A1CBH C13 H8 SING N N 47 A1CBH C14 H10 SING N N 48 A1CBH C14 H11 SING N N 49 A1CBH C15 H12 SING N N 50 A1CBH C15 H13 SING N N 51 A1CBH C16 H14 SING N N 52 A1CBH C16 H15 SING N N 53 A1CBH C17 H16 SING N N 54 A1CBH C17 H17 SING N N 55 A1CBH C19 H18 SING N N 56 A1CBH C20 H19 SING N N 57 A1CBH C21 H20 SING N N 58 A1CBH C21 H21 SING N N 59 A1CBH C21 H22 SING N N 60 A1CBH C23 H23 SING N N 61 A1CBH C24 H24 SING N N 62 A1CBH C24 H25 SING N N 63 A1CBH C25 H26 SING N N 64 A1CBH C25 H27 SING N N 65 A1CBH N5 H28 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CBH SMILES ACDLabs 14.52 "O=C1NC(=O)CCC1N1Cc2cc(ccc2C1=O)c1cc(CN2CCCC2)c2ccn(C)c2n1" A1CBH InChI InChI 1.06 "InChI=1S/C26H27N5O3/c1-29-11-8-19-18(14-30-9-2-3-10-30)13-21(27-24(19)29)16-4-5-20-17(12-16)15-31(26(20)34)22-6-7-23(32)28-25(22)33/h4-5,8,11-13,22H,2-3,6-7,9-10,14-15H2,1H3,(H,28,32,33)/t22-/m0/s1" A1CBH InChIKey InChI 1.06 KVQJAVVPCZGJEN-QFIPXVFZSA-N A1CBH SMILES_CANONICAL CACTVS 3.385 "Cn1ccc2c(CN3CCCC3)cc(nc12)c4ccc5c(CN([C@H]6CCC(=O)NC6=O)C5=O)c4" A1CBH SMILES CACTVS 3.385 "Cn1ccc2c(CN3CCCC3)cc(nc12)c4ccc5c(CN([CH]6CCC(=O)NC6=O)C5=O)c4" A1CBH SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cn1ccc2c1nc(cc2CN3CCCC3)c4ccc5c(c4)CN(C5=O)[C@H]6CCC(=O)NC6=O" A1CBH SMILES "OpenEye OEToolkits" 3.1.0.0 "Cn1ccc2c1nc(cc2CN3CCCC3)c4ccc5c(c4)CN(C5=O)C6CCC(=O)NC6=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CBH "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-3-[(5M)-5-{1-methyl-4-[(pyrrolidin-1-yl)methyl]-1H-pyrrolo[2,3-b]pyridin-6-yl}-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione" A1CBH "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-3-[6-[1-methyl-4-(pyrrolidin-1-ylmethyl)pyrrolo[2,3-b]pyridin-6-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CBH "Create component" 2025-05-06 RCSB A1CBH "Initial release" 2025-09-03 RCSB #