data_A1CBU # _chem_comp.id A1CBU _chem_comp.name "(4S)-4-(iminomethyl)-3-(isoquinolin-4-yl)-1-[6-(trifluoromethyl)pyridin-3-yl]imidazolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H14 F3 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-08 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.343 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CBU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9OIX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CBU C1 C1 C 0 1 N N R N N N 7.367 -14.338 20.869 1.510 -2.040 -0.482 C1 A1CBU 1 A1CBU C2 C2 C 0 1 N N N N N N 8.364 -14.642 22.000 -0.009 -2.195 -0.271 C2 A1CBU 2 A1CBU C3 C3 C 0 1 N N N N N N 8.995 -12.615 20.950 0.508 0.020 -0.549 C3 A1CBU 3 A1CBU C11 C4 C 0 1 Y N N N N N 5.419 -11.399 21.274 3.308 0.319 1.554 C11 A1CBU 4 A1CBU C12 C5 C 0 1 Y N N N N N 5.902 -11.439 19.936 3.706 0.493 0.223 C12 A1CBU 5 A1CBU C13 C6 C 0 1 Y N N N N N 10.617 -13.635 22.578 -1.857 -0.439 -0.200 C13 A1CBU 6 A1CBU C14 C7 C 0 1 Y N N N N N 10.827 -14.586 23.567 -2.225 0.902 -0.280 C14 A1CBU 7 A1CBU C15 C8 C 0 1 Y N N N N N 12.050 -14.654 24.209 -3.565 1.226 -0.144 C15 A1CBU 8 A1CBU C16 C9 C 0 1 Y N N N N N 13.038 -13.754 23.832 -4.486 0.216 0.065 C16 A1CBU 9 A1CBU C17 C10 C 0 1 Y N N N N N 11.655 -12.756 22.278 -2.841 -1.396 0.012 C17 A1CBU 10 A1CBU C18 C11 C 0 1 N N N N N N 14.427 -13.815 24.415 -5.945 0.561 0.213 C18 A1CBU 11 A1CBU F2 F1 F 0 1 N N N N N N 14.888 -12.615 24.729 -6.559 0.545 -1.044 F2 A1CBU 12 A1CBU F F2 F 0 1 N N N N N N 14.469 -14.529 25.509 -6.564 -0.378 1.045 F A1CBU 13 A1CBU F1 F3 F 0 1 N N N N N N 15.310 -14.366 23.578 -6.069 1.836 0.776 F1 A1CBU 14 A1CBU N4 N1 N 0 1 Y N N N N N 12.848 -12.811 22.895 -4.105 -1.044 0.136 N4 A1CBU 15 A1CBU N1 N2 N 0 1 N N N N N N 9.386 -13.601 21.842 -0.517 -0.817 -0.337 N1 A1CBU 16 A1CBU O O1 O 0 1 N N N N N N 9.590 -11.580 20.700 0.371 1.224 -0.646 O A1CBU 17 A1CBU N2 N3 N 0 1 N N N N N N 7.758 -12.980 20.455 1.696 -0.590 -0.644 N2 A1CBU 18 A1CBU C C12 C 0 1 N N N N N N 7.365 -15.362 19.779 2.265 -2.539 0.723 C A1CBU 19 A1CBU N N4 N 0 1 N N N N N N 6.642 -16.423 19.955 3.121 -3.481 0.596 N A1CBU 20 A1CBU C4 C13 C 0 1 Y N N N N N 7.033 -12.204 19.508 2.919 0.049 -0.862 C4 A1CBU 21 A1CBU C10 C14 C 0 1 Y N N N N N 4.338 -10.634 21.608 4.108 0.775 2.559 C10 A1CBU 22 A1CBU C9 C15 C 0 1 Y N N N N N 3.678 -9.881 20.645 5.316 1.411 2.281 C9 A1CBU 23 A1CBU C8 C16 C 0 1 Y N N N N N 4.101 -9.886 19.346 5.734 1.597 0.999 C8 A1CBU 24 A1CBU C7 C17 C 0 1 Y N N N N N 5.225 -10.656 18.958 4.938 1.136 -0.062 C7 A1CBU 25 A1CBU C6 C18 C 0 1 Y N N N N N 5.719 -10.688 17.626 5.319 1.301 -1.403 C6 A1CBU 26 A1CBU N3 N5 N 0 1 Y N N N N N 6.774 -11.389 17.241 4.548 0.856 -2.368 N3 A1CBU 27 A1CBU C5 C19 C 0 1 Y N N N N N 7.397 -12.123 18.170 3.386 0.261 -2.143 C5 A1CBU 28 A1CBU H2 H1 H 0 1 N N N N N N 6.360 -14.297 21.309 1.828 -2.569 -1.380 H2 A1CBU 29 A1CBU H3 H2 H 0 1 N N N N N N 7.877 -14.569 22.984 -0.445 -2.802 -1.065 H3 A1CBU 30 A1CBU H4 H3 H 0 1 N N N N N N 8.801 -15.644 21.880 -0.217 -2.634 0.705 H4 A1CBU 31 A1CBU H10 H4 H 0 1 N N N N N N 5.914 -11.982 22.036 2.372 -0.168 1.783 H10 A1CBU 32 A1CBU H11 H5 H 0 1 N N N N N N 10.037 -15.272 23.835 -1.484 1.670 -0.444 H11 A1CBU 33 A1CBU H12 H6 H 0 1 N N N N N N 12.232 -15.386 24.982 -3.886 2.256 -0.201 H12 A1CBU 34 A1CBU H13 H7 H 0 1 N N N N N N 11.495 -12.002 21.521 -2.567 -2.439 0.075 H13 A1CBU 35 A1CBU H1 H8 H 0 1 N N N N N N 7.945 -15.222 18.878 2.083 -2.102 1.693 H1 A1CBU 36 A1CBU H H9 H 0 1 N N N N N N 6.701 -17.050 19.178 3.607 -3.803 1.372 H A1CBU 37 A1CBU H9 H10 H 0 1 N N N N N N 3.993 -10.614 22.631 3.801 0.641 3.586 H9 A1CBU 38 A1CBU H8 H11 H 0 1 N N N N N N 2.822 -9.286 20.926 5.931 1.763 3.097 H8 A1CBU 39 A1CBU H7 H12 H 0 1 N N N N N N 3.574 -9.298 18.609 6.673 2.092 0.799 H7 A1CBU 40 A1CBU H6 H13 H 0 1 N N N N N N 5.201 -10.103 16.880 6.249 1.795 -1.642 H6 A1CBU 41 A1CBU H5 H14 H 0 1 N N N N N N 8.253 -12.700 17.854 2.794 -0.074 -2.982 H5 A1CBU 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CBU N C DOUB N N 1 A1CBU C C1 SING N N 2 A1CBU C1 C2 SING N N 3 A1CBU C1 N2 SING N N 4 A1CBU C2 N1 SING N N 5 A1CBU C3 N1 SING N N 6 A1CBU N1 C13 SING N N 7 A1CBU O C3 DOUB N N 8 A1CBU N2 C3 SING N N 9 A1CBU C4 N2 SING N N 10 A1CBU C4 C5 SING Y N 11 A1CBU C12 C4 DOUB Y N 12 A1CBU C5 N3 DOUB Y N 13 A1CBU N3 C6 SING Y N 14 A1CBU C6 C7 DOUB Y N 15 A1CBU C7 C8 SING Y N 16 A1CBU C7 C12 SING Y N 17 A1CBU C8 C9 DOUB Y N 18 A1CBU C9 C10 SING Y N 19 A1CBU C10 C11 DOUB Y N 20 A1CBU C11 C12 SING Y N 21 A1CBU C13 C14 SING Y N 22 A1CBU C13 C17 DOUB Y N 23 A1CBU C14 C15 DOUB Y N 24 A1CBU C15 C16 SING Y N 25 A1CBU N4 C16 DOUB Y N 26 A1CBU C16 C18 SING N N 27 A1CBU C17 N4 SING Y N 28 A1CBU F C18 SING N N 29 A1CBU F1 C18 SING N N 30 A1CBU C18 F2 SING N N 31 A1CBU C1 H2 SING N N 32 A1CBU C2 H3 SING N N 33 A1CBU C2 H4 SING N N 34 A1CBU C11 H10 SING N N 35 A1CBU C14 H11 SING N N 36 A1CBU C15 H12 SING N N 37 A1CBU C17 H13 SING N N 38 A1CBU C H1 SING N N 39 A1CBU N H SING N N 40 A1CBU C10 H9 SING N N 41 A1CBU C9 H8 SING N N 42 A1CBU C8 H7 SING N N 43 A1CBU C6 H6 SING N N 44 A1CBU C5 H5 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CBU SMILES ACDLabs 14.52 "FC(F)(F)c1ccc(cn1)N1CC(C=N)N(c2cncc3ccccc23)C1=O" A1CBU InChI InChI 1.06 "InChI=1S/C19H14F3N5O/c20-19(21,22)17-6-5-13(9-25-17)26-11-14(7-23)27(18(26)28)16-10-24-8-12-3-1-2-4-15(12)16/h1-10,14,23H,11H2/b23-7+/t14-/m0/s1" A1CBU InChIKey InChI 1.06 XZYITQWBMBTCLK-BUTILUPYSA-N A1CBU SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1ccc(cn1)N2C[C@H](C=N)N(C2=O)c3cncc4ccccc34" A1CBU SMILES CACTVS 3.385 "FC(F)(F)c1ccc(cn1)N2C[CH](C=N)N(C2=O)c3cncc4ccccc34" A1CBU SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)cncc2N3[C@H](CN(C3=O)c4ccc(nc4)C(F)(F)F)C=N" A1CBU SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)cncc2N3C(CN(C3=O)c4ccc(nc4)C(F)(F)F)C=N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CBU "SYSTEMATIC NAME" ACDLabs 14.52 "(4S)-4-(iminomethyl)-3-(isoquinolin-4-yl)-1-[6-(trifluoromethyl)pyridin-3-yl]imidazolidin-2-one" A1CBU "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(4~{R})-4-(iminomethyl)-3-isoquinolin-4-yl-1-[6-(trifluoromethyl)pyridin-3-yl]imidazolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CBU "Create component" 2025-05-08 RCSB A1CBU "Initial release" 2025-12-24 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1CBU _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #