data_A1CBZ # _chem_comp.id A1CBZ _chem_comp.name "(6R,13R,14S)-1-(difluoromethoxy)-11-[2-(2-hydroxypropan-2-yl)pyrimidin-5-yl]-7H-6,14-methanopyrido[3',2':4,5]imidazo[1,2-b][2,5]benzodiazocin-5(14H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H20 F2 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-09 _chem_comp.pdbx_modified_date 2025-07-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.451 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CBZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9OJY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CBZ C5 C1 C 0 1 Y N N N N N -22.495 -22.870 -17.122 -5.014 -0.148 -0.120 C5 A1CBZ 1 A1CBZ C7 C2 C 0 1 Y N N N N N -22.724 -24.260 -18.905 -2.756 -0.021 -0.523 C7 A1CBZ 2 A1CBZ C8 C3 C 0 1 Y N N N N N -22.151 -25.311 -18.203 -2.585 -1.250 0.122 C8 A1CBZ 3 A1CBZ C13 C4 C 0 1 Y N N N N N -22.518 -28.440 -20.289 0.094 -3.707 1.042 C13 A1CBZ 4 A1CBZ C17 C5 C 0 1 N N N N N N -19.445 -31.982 -18.737 4.644 -2.178 -0.292 C17 A1CBZ 5 A1CBZ C20 C6 C 0 1 N N S N N N -18.902 -29.523 -17.130 2.586 -0.151 -1.311 C20 A1CBZ 6 A1CBZ C21 C7 C 0 1 Y N N N N N -19.639 -29.712 -15.812 2.830 0.999 -0.357 C21 A1CBZ 7 A1CBZ C22 C8 C 0 1 Y N N N N N -19.904 -28.659 -14.920 1.775 1.830 -0.013 C22 A1CBZ 8 A1CBZ C24 C9 C 0 1 N N N N N N -18.375 -26.910 -14.724 -0.513 2.471 -0.097 C24 A1CBZ 9 A1CBZ C28 C10 C 0 1 Y N N N N N -20.960 -30.182 -13.398 3.253 3.198 1.305 C28 A1CBZ 10 A1CBZ C1 C11 C 0 1 N N N N N N -21.257 -20.866 -16.186 -6.265 1.806 -0.995 C1 A1CBZ 11 A1CBZ C2 C12 C 0 1 N N N N N N -22.617 -21.461 -16.528 -6.380 0.474 -0.250 C2 A1CBZ 12 A1CBZ C3 C13 C 0 1 N N N N N N -23.517 -21.471 -15.295 -7.298 -0.469 -1.030 C3 A1CBZ 13 A1CBZ O4 O1 O 0 1 N N N N N N -23.214 -20.569 -17.493 -6.926 0.702 1.051 O4 A1CBZ 14 A1CBZ N6 N1 N 0 1 Y N N N N N -22.906 -23.041 -18.385 -3.973 0.486 -0.620 N6 A1CBZ 15 A1CBZ C9 C14 C 0 1 Y N N N N N -21.784 -25.011 -16.895 -3.717 -1.887 0.637 C9 A1CBZ 16 A1CBZ N10 N2 N 0 1 Y N N N N N -21.945 -23.802 -16.340 -4.897 -1.308 0.496 N10 A1CBZ 17 A1CBZ C11 C15 C 0 1 Y N N N N N -21.901 -26.638 -18.815 -1.240 -1.860 0.255 C11 A1CBZ 18 A1CBZ C12 C16 C 0 1 Y N N N N N -22.719 -27.147 -19.833 -1.129 -3.094 0.892 C12 A1CBZ 19 A1CBZ C14 C17 C 0 1 Y N N N N N -21.489 -29.189 -19.723 1.189 -3.008 0.516 C14 A1CBZ 20 A1CBZ N15 N3 N 0 1 Y N N N N N -21.093 -30.516 -19.887 2.507 -3.284 0.493 N15 A1CBZ 21 A1CBZ C16 C18 C 0 1 Y N N N N N -20.138 -30.685 -19.003 3.132 -2.318 -0.101 C16 A1CBZ 22 A1CBZ N18 N4 N 0 1 N N R N N N -18.838 -31.925 -17.408 4.736 -0.795 -0.727 N18 A1CBZ 23 A1CBZ C19 C19 C 0 1 N N N N N N -17.990 -30.739 -17.254 3.967 -0.464 -1.964 C19 A1CBZ 24 A1CBZ O23 O2 O 0 1 N N N N N N -19.513 -27.403 -15.298 0.528 1.575 -0.490 O23 A1CBZ 25 A1CBZ F25 F1 F 0 1 N N N N N N -18.580 -26.485 -13.455 -0.635 2.461 1.297 F25 A1CBZ 26 A1CBZ F26 F2 F 0 1 N N N N N N -17.774 -25.906 -15.382 -0.203 3.765 -0.529 F26 A1CBZ 27 A1CBZ C27 C20 C 0 1 Y N N N N N -20.557 -28.896 -13.719 1.989 2.921 0.817 C27 A1CBZ 28 A1CBZ C29 C21 C 0 1 Y N N N N N -20.713 -31.235 -14.265 4.311 2.368 0.987 C29 A1CBZ 29 A1CBZ C30 C22 C 0 1 Y N N N N N -20.059 -31.007 -15.476 4.095 1.258 0.181 C30 A1CBZ 30 A1CBZ C31 C23 C 0 1 N N N N N N -19.862 -32.131 -16.416 5.189 0.270 -0.062 C31 A1CBZ 31 A1CBZ O32 O3 O 0 1 N N N N N N -20.586 -33.115 -16.453 6.341 0.416 0.300 O32 A1CBZ 32 A1CBZ N33 N5 N 0 1 Y N N N N N -19.873 -29.557 -18.268 2.246 -1.361 -0.537 N33 A1CBZ 33 A1CBZ C34 C24 C 0 1 Y N N N N N -20.734 -28.584 -18.724 1.006 -1.760 -0.133 C34 A1CBZ 34 A1CBZ N35 N6 N 0 1 Y N N N N N -20.895 -27.346 -18.264 -0.194 -1.211 -0.254 N35 A1CBZ 35 A1CBZ H43 H1 H 0 1 N N N N N N -23.039 -24.435 -19.923 -1.908 0.505 -0.935 H43 A1CBZ 36 A1CBZ H46 H2 H 0 1 N N N N N N -23.144 -28.857 -21.064 0.203 -4.661 1.536 H46 A1CBZ 37 A1CBZ H47 H3 H 0 1 N N N N N N -20.173 -32.806 -18.776 5.175 -2.330 0.648 H47 A1CBZ 38 A1CBZ H48 H4 H 0 1 N N N N N N -18.664 -32.146 -19.494 5.008 -2.858 -1.062 H48 A1CBZ 39 A1CBZ H51 H5 H 0 1 N N N N N N -18.318 -28.591 -17.127 1.820 0.089 -2.048 H51 A1CBZ 40 A1CBZ H52 H6 H 0 1 N N N N N N -17.657 -27.742 -14.673 -1.455 2.154 -0.545 H52 A1CBZ 41 A1CBZ H54 H7 H 0 1 N N N N N N -21.471 -30.366 -12.464 3.412 4.061 1.934 H54 A1CBZ 42 A1CBZ H36 H8 H 0 1 N N N N N N -20.620 -20.865 -17.083 -7.253 2.256 -1.089 H36 A1CBZ 43 A1CBZ H38 H9 H 0 1 N N N N N N -21.388 -19.834 -15.829 -5.611 2.478 -0.439 H38 A1CBZ 44 A1CBZ H37 H10 H 0 1 N N N N N N -20.781 -21.469 -15.399 -5.849 1.632 -1.987 H37 A1CBZ 45 A1CBZ H39 H11 H 0 1 N N N N N N -24.494 -21.903 -15.557 -6.882 -0.642 -2.022 H39 A1CBZ 46 A1CBZ H40 H12 H 0 1 N N N N N N -23.049 -22.076 -14.505 -7.380 -1.417 -0.499 H40 A1CBZ 47 A1CBZ H41 H13 H 0 1 N N N N N N -23.656 -20.441 -14.934 -8.286 -0.018 -1.124 H41 A1CBZ 48 A1CBZ H42 H14 H 0 1 N N N N N N -24.070 -20.897 -17.741 -7.027 -0.100 1.581 H42 A1CBZ 49 A1CBZ H44 H15 H 0 1 N N N N N N -21.346 -25.795 -16.295 -3.629 -2.838 1.142 H44 A1CBZ 50 A1CBZ H45 H16 H 0 1 N N N N N N -23.501 -26.536 -20.259 -2.016 -3.577 1.274 H45 A1CBZ 51 A1CBZ H50 H17 H 0 1 N N N N N N -17.372 -30.836 -16.349 3.907 -1.318 -2.638 H50 A1CBZ 52 A1CBZ H49 H18 H 0 1 N N N N N N -17.338 -30.629 -18.133 4.378 0.411 -2.469 H49 A1CBZ 53 A1CBZ H53 H19 H 0 1 N N N N N N -20.750 -28.081 -13.037 1.161 3.561 1.084 H53 A1CBZ 54 A1CBZ H55 H20 H 0 1 N N N N N N -21.028 -32.234 -14.002 5.301 2.581 1.364 H55 A1CBZ 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CBZ C1 C2 SING N N 1 A1CBZ C2 C3 SING N N 2 A1CBZ C2 O4 SING N N 3 A1CBZ C2 C5 SING N N 4 A1CBZ C5 N10 DOUB Y N 5 A1CBZ C5 N6 SING Y N 6 A1CBZ N6 C7 DOUB Y N 7 A1CBZ C7 C8 SING Y N 8 A1CBZ C8 C9 DOUB Y N 9 A1CBZ C8 C11 SING N N 10 A1CBZ C9 N10 SING Y N 11 A1CBZ C11 N35 SING Y N 12 A1CBZ C11 C12 DOUB Y N 13 A1CBZ C12 C13 SING Y N 14 A1CBZ C13 C14 DOUB Y N 15 A1CBZ C14 C34 SING Y N 16 A1CBZ C14 N15 SING Y N 17 A1CBZ N15 C16 DOUB Y N 18 A1CBZ C16 N33 SING Y N 19 A1CBZ C16 C17 SING N N 20 A1CBZ C17 N18 SING N N 21 A1CBZ N18 C31 SING N N 22 A1CBZ N18 C19 SING N N 23 A1CBZ C19 C20 SING N N 24 A1CBZ C20 C21 SING N N 25 A1CBZ C20 N33 SING N N 26 A1CBZ C21 C30 SING Y N 27 A1CBZ C21 C22 DOUB Y N 28 A1CBZ C22 O23 SING N N 29 A1CBZ C22 C27 SING Y N 30 A1CBZ O23 C24 SING N N 31 A1CBZ C24 F25 SING N N 32 A1CBZ C24 F26 SING N N 33 A1CBZ C27 C28 DOUB Y N 34 A1CBZ C28 C29 SING Y N 35 A1CBZ C29 C30 DOUB Y N 36 A1CBZ C30 C31 SING N N 37 A1CBZ C31 O32 DOUB N N 38 A1CBZ N33 C34 SING Y N 39 A1CBZ C34 N35 DOUB Y N 40 A1CBZ C7 H43 SING N N 41 A1CBZ C13 H46 SING N N 42 A1CBZ C17 H47 SING N N 43 A1CBZ C17 H48 SING N N 44 A1CBZ C20 H51 SING N N 45 A1CBZ C24 H52 SING N N 46 A1CBZ C28 H54 SING N N 47 A1CBZ C1 H36 SING N N 48 A1CBZ C1 H38 SING N N 49 A1CBZ C1 H37 SING N N 50 A1CBZ C3 H39 SING N N 51 A1CBZ C3 H40 SING N N 52 A1CBZ C3 H41 SING N N 53 A1CBZ O4 H42 SING N N 54 A1CBZ C9 H44 SING N N 55 A1CBZ C12 H45 SING N N 56 A1CBZ C19 H50 SING N N 57 A1CBZ C19 H49 SING N N 58 A1CBZ C27 H53 SING N N 59 A1CBZ C29 H55 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CBZ SMILES ACDLabs 14.52 "CC(C)(O)c1ncc(cn1)c1nc2c(nc3CN4CC(n23)c2c(OC(F)F)cccc2C4=O)cc1" A1CBZ InChI InChI 1.06 "InChI=1S/C24H20F2N6O3/c1-24(2,34)22-27-8-12(9-28-22)14-6-7-15-20(30-14)32-16-10-31(11-18(32)29-15)21(33)13-4-3-5-17(19(13)16)35-23(25)26/h3-9,16,23,34H,10-11H2,1-2H3/t16-/m1/s1" A1CBZ InChIKey InChI 1.06 PQIYTIQOQHGRFX-MRXNPFEDSA-N A1CBZ SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)c1ncc(cn1)c2ccc3nc4C[N@]5C[C@@H](n4c3n2)c6c(OC(F)F)cccc6C5=O" A1CBZ SMILES CACTVS 3.385 "CC(C)(O)c1ncc(cn1)c2ccc3nc4C[N]5C[CH](n4c3n2)c6c(OC(F)F)cccc6C5=O" A1CBZ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)(c1ncc(cn1)c2ccc3c(n2)n4c(n3)CN5C[C@@H]4c6c(cccc6OC(F)F)C5=O)O" A1CBZ SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)(c1ncc(cn1)c2ccc3c(n2)n4c(n3)CN5CC4c6c(cccc6OC(F)F)C5=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CBZ "SYSTEMATIC NAME" ACDLabs 14.52 "(6R,13R,14S)-1-(difluoromethoxy)-11-[2-(2-hydroxypropan-2-yl)pyrimidin-5-yl]-7H-6,14-methanopyrido[3',2':4,5]imidazo[1,2-b][2,5]benzodiazocin-5(14H)-one" A1CBZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{S})-18-[bis(fluoranyl)methoxy]-5-[2-(2-oxidanylpropan-2-yl)pyrimidin-5-yl]-2,4,9,12-tetrazapentacyclo[10.7.1.0^{2,10}.0^{3,8}.0^{14,19}]icosa-3,5,7,9,14,16,18-heptaen-13-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CBZ "Create component" 2025-05-09 RCSB A1CBZ "Initial release" 2025-07-23 RCSB #