data_A1CCP # _chem_comp.id A1CCP _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-[[[[(3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]methyl]phosphinic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 N10 O18 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-14 _chem_comp.pdbx_modified_date 2025-08-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 834.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CCP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9OM9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CCP N1 N1 N 0 1 Y N N N N N 23.086 -18.576 16.116 -8.702 -1.936 2.586 N1 A1CCP 1 A1CCP N2 N2 N 0 1 Y N N N N N 20.302 -19.984 17.667 -8.690 -4.196 -0.046 N2 A1CCP 2 A1CCP C3 C1 C 0 1 N N R N N N 19.652 -16.237 15.206 -8.500 -0.797 -1.651 C3 A1CCP 3 A1CCP C4 C2 C 0 1 N N S N N N 18.624 -16.123 14.071 -7.839 0.436 -2.307 C4 A1CCP 4 A1CCP C5 C3 C 0 1 Y N N N N N 22.135 -17.850 15.528 -8.127 -1.183 1.693 C5 A1CCP 5 A1CCP C6 C4 C 0 1 Y N N N N N 22.490 -19.456 16.979 -8.979 -3.146 2.044 C6 A1CCP 6 A1CCP C7 C5 C 0 1 Y N N N N N 21.146 -19.252 16.915 -8.532 -3.116 0.712 C7 A1CCP 7 A1CCP C8 C6 C 0 1 Y N N N N N 20.781 -20.929 18.497 -9.255 -5.280 0.440 C8 A1CCP 8 A1CCP N N3 N 0 1 Y N N N N N 20.932 -18.243 16.014 -8.000 -1.866 0.520 N A1CCP 9 A1CCP C C7 C 0 1 N N N N N N 18.781 -17.832 12.184 -5.985 1.920 -1.449 C A1CCP 10 A1CCP O O1 O 0 1 N N N N N N 22.189 -17.127 10.853 -3.888 4.211 -1.798 O A1CCP 11 A1CCP C1 C8 C 0 1 N N R N N N 18.375 -17.584 13.649 -6.422 0.474 -1.692 C1 A1CCP 12 A1CCP C10 C9 C 0 1 N N N N N N 18.756 -15.514 8.685 0.426 2.745 0.294 C10 A1CCP 13 A1CCP C2 C10 C 0 1 N N R N N N 19.602 -17.713 15.623 -7.404 -1.359 -0.718 C2 A1CCP 14 A1CCP C9 C11 C 0 1 Y N N N N N 22.992 -20.442 17.851 -9.577 -4.327 2.517 C9 A1CCP 15 A1CCP N3 N4 N 0 1 Y N N N N N 22.114 -21.166 18.598 -9.691 -5.356 1.684 N3 A1CCP 16 A1CCP N4 N5 N 0 1 N N N N N N 24.324 -20.674 17.946 -10.036 -4.416 3.819 N4 A1CCP 17 A1CCP O1 O2 O 0 1 N N N N N N 19.877 -17.002 11.770 -4.632 1.938 -0.990 O1 A1CCP 18 A1CCP O10 O3 O 0 1 N N N N N N 14.780 -17.413 6.545 5.547 1.643 0.938 O10 A1CCP 19 A1CCP O14 O4 O 0 1 N N N N N N 16.332 -19.176 5.578 5.265 4.020 0.135 O14 A1CCP 20 A1CCP O15 O5 O 0 1 N N N N N N 17.138 -17.183 9.995 2.253 4.468 -0.959 O15 A1CCP 21 A1CCP O16 O6 O 0 1 N N N N N N 21.481 -15.819 8.218 -0.664 4.558 -1.550 O16 A1CCP 22 A1CCP O17 O7 O 0 1 N N N N N N 20.939 -19.213 11.310 -4.543 4.005 0.631 O17 A1CCP 23 A1CCP O2 O8 O 0 1 N N N N N N 19.195 -18.432 14.453 -6.545 -0.232 -0.438 O2 A1CCP 24 A1CCP O3 O9 O 0 1 N N N N N N 17.419 -15.586 14.626 -7.765 0.270 -3.724 O3 A1CCP 25 A1CCP O4 O10 O 0 1 N N N N N N 19.271 -15.400 16.304 -8.854 -1.762 -2.644 O4 A1CCP 26 A1CCP O5 O11 O 0 1 N N N N N N 20.257 -17.791 9.310 -2.313 2.952 -0.280 O5 A1CCP 27 A1CCP O6 O12 O 0 1 N N N N N N 19.903 -17.131 6.860 -1.153 4.853 0.909 O6 A1CCP 28 A1CCP O7 O13 O 0 1 N N N N N N 16.058 -15.665 8.413 1.764 4.762 1.500 O7 A1CCP 29 A1CCP O8 O14 O 0 1 N N N N N N 17.245 -17.753 7.523 3.179 2.782 0.833 O8 A1CCP 30 A1CCP O9 O15 O 0 1 N N N N N N 15.407 -19.565 7.821 4.949 3.589 2.602 O9 A1CCP 31 A1CCP P P1 P 0 1 N N N N N N 20.826 -17.783 10.836 -3.845 3.297 -0.635 P A1CCP 32 A1CCP P1 P2 P 0 1 N N N N N N 20.166 -16.564 8.232 -0.971 3.831 -0.146 P1 A1CCP 33 A1CCP P2 P3 P 0 1 N N N N N N 17.262 -16.548 8.636 1.946 3.741 0.444 P2 A1CCP 34 A1CCP P3 P4 P 0 1 N N N N N N 15.946 -18.519 6.877 4.746 3.030 1.106 P3 A1CCP 35 A1CCP H1 H1 H 0 1 N N N N N N 20.655 -15.984 14.833 -9.377 -0.502 -1.076 H1 A1CCP 36 A1CCP H2 H2 H 0 1 N N N N N N 19.015 -15.526 13.234 -8.390 1.343 -2.057 H2 A1CCP 37 A1CCP H3 H3 H 0 1 N N N N N N 22.296 -17.079 14.789 -7.799 -0.167 1.857 H3 A1CCP 38 A1CCP H4 H4 H 0 1 N N N N N N 20.093 -21.509 19.093 -9.368 -6.140 -0.204 H4 A1CCP 39 A1CCP H5 H5 H 0 1 N N N N N N 17.916 -17.623 11.538 -6.062 2.484 -2.379 H5 A1CCP 40 A1CCP H6 H6 H 0 1 N N N N N N 19.075 -18.886 12.073 -6.630 2.372 -0.696 H6 A1CCP 41 A1CCP H7 H7 H 0 1 N N N N N N 17.310 -17.826 13.779 -5.711 -0.032 -2.346 H7 A1CCP 42 A1CCP H8 H8 H 0 1 N N N N N N 18.899 -15.110 9.698 0.218 2.253 1.244 H8 A1CCP 43 A1CCP H9 H9 H 0 1 N N N N N N 18.661 -14.684 7.969 0.560 1.993 -0.484 H9 A1CCP 44 A1CCP H10 H10 H 0 1 N N N N N N 18.880 -17.844 16.442 -6.845 -2.148 -1.221 H10 A1CCP 45 A1CCP H11 H11 H 0 1 N N N N N N 24.489 -21.406 18.607 -9.947 -3.657 4.418 H11 A1CCP 46 A1CCP H12 H12 H 0 1 N N N N N N 24.679 -20.946 17.052 -10.447 -5.236 4.134 H12 A1CCP 47 A1CCP H14 H14 H 0 1 N N N N N N 16.335 -16.890 10.410 2.383 3.858 -1.698 H14 A1CCP 48 A1CCP H15 H15 H 0 1 N N N N N N 21.863 -15.866 7.349 -0.533 3.948 -2.289 H15 A1CCP 49 A1CCP H16 H16 H 0 1 N N N N N N 21.845 -19.406 11.522 -4.551 3.462 1.431 H16 A1CCP 50 A1CCP H17 H17 H 0 1 N N N N N N 17.565 -14.685 14.889 -8.626 0.180 -4.155 H17 A1CCP 51 A1CCP H18 H18 H 0 1 N N N N N N 19.913 -15.478 17.000 -9.539 -1.462 -3.258 H18 A1CCP 52 A1CCP H19 H19 H 0 1 N N N N N N 15.425 -20.415 7.397 4.630 2.991 3.292 H19 A1CCP 53 A1CCP C11 C12 C 0 1 N N R N N N ? ? ? 6.971 1.553 1.014 C11 A1CCP 54 A1CCP C12 C13 C 0 1 N N N N N N ? ? ? 7.400 0.098 0.812 C12 A1CCP 55 A1CCP O13 O16 O 0 1 N N N N N N ? ? ? 7.104 -0.338 -0.532 O13 A1CCP 56 A1CCP C14 C14 C 0 1 N N S N N N ? ? ? 7.954 -1.464 -0.805 C14 A1CCP 57 A1CCP C15 C15 C 0 1 N N R N N N ? ? ? 9.207 -1.317 0.080 C15 A1CCP 58 A1CCP C16 C16 C 0 1 N N S N N N ? ? ? 8.942 -0.033 0.903 C16 A1CCP 59 A1CCP N5 N6 N 0 1 Y N N N N N ? ? ? 7.255 -2.708 -0.475 N5 A1CCP 60 A1CCP C17 C17 C 0 1 Y N N N N N ? ? ? 7.521 -3.951 -0.992 C17 A1CCP 61 A1CCP C18 C18 C 0 1 Y N N N N N ? ? ? 6.605 -4.827 -0.386 C18 A1CCP 62 A1CCP N6 N7 N 0 1 Y N N N N N ? ? ? 5.840 -4.087 0.453 N6 A1CCP 63 A1CCP C20 C20 C 0 1 Y N N N N N ? ? ? 6.223 -2.845 0.406 C20 A1CCP 64 A1CCP N7 N7 N 0 1 Y N N N N N ? ? ? 8.395 -4.435 -1.868 N7 A1CCP 65 A1CCP C22 C22 C 0 1 Y N N N N N ? ? ? 8.405 -5.717 -2.168 C22 A1CCP 66 A1CCP N8 N8 N 0 1 Y N N N N N ? ? ? 7.563 -6.578 -1.626 N8 A1CCP 67 A1CCP C24 C24 C 0 1 Y N N N N N ? ? ? 6.654 -6.187 -0.739 C24 A1CCP 68 A1CCP O11 O17 O 0 1 N N N N N N ? ? ? 9.586 1.096 0.308 O11 A1CCP 69 A1CCP O12 O18 O 0 1 N N N N N N ? ? ? 9.344 -2.446 0.945 O12 A1CCP 70 A1CCP N9 N9 N 0 1 N N N N N N ? ? ? 5.777 -7.096 -0.175 N9 A1CCP 71 A1CCP H13 H13 H 0 1 N N N N N N ? ? ? 7.416 2.174 0.237 H13 A1CCP 72 A1CCP H20 H20 H 0 1 N N N N N N ? ? ? 7.305 1.898 1.992 H20 A1CCP 73 A1CCP H21 H21 H 0 1 N N N N N N ? ? ? 6.914 -0.549 1.542 H21 A1CCP 74 A1CCP H22 H22 H 0 1 N N N N N N ? ? ? 8.241 -1.465 -1.857 H22 A1CCP 75 A1CCP H23 H23 H 0 1 N N N N N N ? ? ? 10.098 -1.198 -0.537 H23 A1CCP 76 A1CCP H24 H24 H 0 1 N N N N N N ? ? ? 9.262 -0.161 1.937 H24 A1CCP 77 A1CCP H25 H25 H 0 1 N N N N N N ? ? ? 5.785 -2.039 0.976 H25 A1CCP 78 A1CCP H26 H26 H 0 1 N N N N N N ? ? ? 9.127 -6.078 -2.885 H26 A1CCP 79 A1CCP H27 H27 H 0 1 N N N N N N ? ? ? 10.549 1.019 0.260 H27 A1CCP 80 A1CCP H28 H28 H 0 1 N N N N N N ? ? ? 10.117 -2.406 1.524 H28 A1CCP 81 A1CCP H29 H29 H 0 1 N N N N N N ? ? ? 5.820 -8.032 -0.427 H29 A1CCP 82 A1CCP H30 H30 H 0 1 N N N N N N ? ? ? 5.118 -6.798 0.471 H30 A1CCP 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CCP O14 P3 DOUB N N 1 A1CCP O10 P3 SING N N 2 A1CCP O6 P1 DOUB N N 3 A1CCP P3 O8 SING N N 4 A1CCP P3 O9 SING N N 5 A1CCP O8 P2 SING N N 6 A1CCP O16 P1 SING N N 7 A1CCP P1 C10 SING N N 8 A1CCP P1 O5 SING N N 9 A1CCP O7 P2 DOUB N N 10 A1CCP P2 C10 SING N N 11 A1CCP P2 O15 SING N N 12 A1CCP O5 P SING N N 13 A1CCP P O DOUB N N 14 A1CCP P O17 SING N N 15 A1CCP P O1 SING N N 16 A1CCP O1 C SING N N 17 A1CCP C C1 SING N N 18 A1CCP C1 C4 SING N N 19 A1CCP C1 O2 SING N N 20 A1CCP C4 O3 SING N N 21 A1CCP C4 C3 SING N N 22 A1CCP O2 C2 SING N N 23 A1CCP C3 C2 SING N N 24 A1CCP C3 O4 SING N N 25 A1CCP C5 N SING Y N 26 A1CCP C5 N1 DOUB Y N 27 A1CCP C2 N SING N N 28 A1CCP N C7 SING Y N 29 A1CCP N1 C6 SING Y N 30 A1CCP C7 C6 DOUB Y N 31 A1CCP C7 N2 SING Y N 32 A1CCP C6 C9 SING Y N 33 A1CCP N2 C8 DOUB Y N 34 A1CCP C9 N4 SING N N 35 A1CCP C9 N3 DOUB Y N 36 A1CCP C8 N3 SING Y N 37 A1CCP C3 H1 SING N N 38 A1CCP C4 H2 SING N N 39 A1CCP C5 H3 SING N N 40 A1CCP C8 H4 SING N N 41 A1CCP C H5 SING N N 42 A1CCP C H6 SING N N 43 A1CCP C1 H7 SING N N 44 A1CCP C10 H8 SING N N 45 A1CCP C10 H9 SING N N 46 A1CCP C2 H10 SING N N 47 A1CCP N4 H11 SING N N 48 A1CCP N4 H12 SING N N 49 A1CCP O15 H14 SING N N 50 A1CCP O16 H15 SING N N 51 A1CCP O17 H16 SING N N 52 A1CCP O3 H17 SING N N 53 A1CCP O4 H18 SING N N 54 A1CCP O9 H19 SING N N 55 A1CCP O10 C11 SING N N 56 A1CCP C11 C12 SING N N 57 A1CCP C12 O13 SING N N 58 A1CCP O13 C14 SING N N 59 A1CCP C14 C15 SING N N 60 A1CCP C15 C16 SING N N 61 A1CCP C16 C12 SING N N 62 A1CCP C14 N5 SING N N 63 A1CCP N5 C17 SING Y N 64 A1CCP C17 C18 DOUB Y N 65 A1CCP C18 N6 SING Y N 66 A1CCP N6 C20 DOUB Y N 67 A1CCP C20 N5 SING Y N 68 A1CCP C17 N7 SING Y N 69 A1CCP N7 C22 DOUB Y N 70 A1CCP C22 N8 SING Y N 71 A1CCP N8 C24 DOUB Y N 72 A1CCP C24 C18 SING Y N 73 A1CCP C16 O11 SING N N 74 A1CCP C15 O12 SING N N 75 A1CCP C24 N9 SING N N 76 A1CCP C11 H13 SING N N 77 A1CCP C11 H20 SING N N 78 A1CCP C12 H21 SING N N 79 A1CCP C14 H22 SING N N 80 A1CCP C15 H23 SING N N 81 A1CCP C16 H24 SING N N 82 A1CCP C20 H25 SING N N 83 A1CCP C22 H26 SING N N 84 A1CCP O11 H27 SING N N 85 A1CCP O12 H28 SING N N 86 A1CCP N9 H29 SING N N 87 A1CCP N9 H30 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CCP InChI InChI 1.06 "InChI=1S/C21H30N10O18P4/c22-16-10-18(26-3-24-16)30(5-28-10)20-14(34)12(32)8(46-20)1-44-52(40,41)48-50(36,37)7-51(38,39)49-53(42,43)45-2-9-13(33)15(35)21(47-9)31-6-29-11-17(23)25-4-27-19(11)31/h3-6,8-9,12-15,20-21,32-35H,1-2,7H2,(H,36,37)(H,38,39)(H,40,41)(H,42,43)(H2,22,24,26)(H2,23,25,27)/t8-,9?,12-,13?,14-,15?,20-,21?/m1/s1" A1CCP InChIKey InChI 1.06 YUVFOJNMZCEVNK-TUJSLMCJSA-N A1CCP SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)C[P](O)(=O)O[P](O)(=O)OCC4OC(C(O)C4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O" A1CCP SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C[P](O)(=O)O[P](O)(=O)OCC4OC(C(O)C4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O" A1CCP SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(CP(=O)(O)OP(=O)(O)OCC4[C@H]([C@@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O)N" A1CCP SMILES "OpenEye OEToolkits" 3.1.0.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(CP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1CCP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-[[[[(3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]methyl]phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CCP "Create component" 2025-05-14 RCSB A1CCP "Initial release" 2025-09-03 RCSB #