data_A1CDL # _chem_comp.id A1CDL _chem_comp.name "N-{(2S,3R,4E)-1-[(4-O-beta-D-galactopyranosyl-beta-D-glucopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}octadecanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C48 H91 N O13" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ganglioside GD3 isomer fragment" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-21 _chem_comp.pdbx_modified_date 2025-11-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 890.235 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CDL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9OI0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CDL C01 C1 C 0 1 N N N N N N 0.642 15.479 18.866 17.825 11.631 -0.074 C01 A1CDL 1 A1CDL C02 C2 C 0 1 N N N N N N 1.459 16.152 17.744 16.858 10.777 0.748 C02 A1CDL 2 A1CDL C03 C3 C 0 1 N N N N N N 1.346 17.690 17.758 15.736 10.263 -0.157 C03 A1CDL 3 A1CDL C04 C4 C 0 1 N N N N N N 2.648 18.389 17.308 14.769 9.409 0.664 C04 A1CDL 4 A1CDL C05 C5 C 0 1 N N N N N N 2.413 19.576 16.358 13.647 8.895 -0.240 C05 A1CDL 5 A1CDL C06 C6 C 0 1 N N N N N N 2.335 19.147 14.878 12.679 8.041 0.581 C06 A1CDL 6 A1CDL C07 C7 C 0 1 N N N N N N 3.719 19.030 14.203 11.558 7.527 -0.323 C07 A1CDL 7 A1CDL C08 C8 C 0 1 N N N N N N 3.900 20.038 13.041 10.590 6.673 0.498 C08 A1CDL 8 A1CDL C09 C9 C 0 1 N N N N N N 2.764 19.927 11.995 9.469 6.159 -0.406 C09 A1CDL 9 A1CDL C10 C10 C 0 1 N N N N N N 2.281 20.727 10.756 8.502 5.305 0.415 C10 A1CDL 10 A1CDL C11 C11 C 0 1 N N N N N N 1.592 19.814 9.707 7.380 4.791 -0.489 C11 A1CDL 11 A1CDL C12 C12 C 0 1 N N N N N N 0.640 20.624 8.782 6.412 3.937 0.333 C12 A1CDL 12 A1CDL C13 C13 C 0 1 N N N N N N -0.316 19.730 7.946 5.291 3.423 -0.572 C13 A1CDL 13 A1CDL C14 C14 C 0 1 N N N N N N -1.749 19.666 8.524 4.323 2.569 0.250 C14 A1CDL 14 A1CDL C15 C15 C 0 1 N N N N N N -2.406 21.063 8.635 3.202 2.055 -0.655 C15 A1CDL 15 A1CDL C16 C16 C 0 1 N N N N N N -3.185 21.481 7.360 2.234 1.201 0.167 C16 A1CDL 16 A1CDL C17 C17 C 0 1 N N N N N N -3.925 22.825 7.553 1.113 0.687 -0.738 C17 A1CDL 17 A1CDL C18 C18 C 0 1 N N N N N N -5.472 22.731 7.459 0.160 -0.154 0.071 C18 A1CDL 18 A1CDL C21 C19 C 0 1 N N S N N N -7.543 21.450 6.257 -1.839 -1.534 0.266 C21 A1CDL 19 A1CDL C22 C20 C 0 1 N N N N N N -8.597 22.388 6.938 -2.870 -0.628 0.943 C22 A1CDL 20 A1CDL C24 C21 C 0 1 N N R N N N -10.290 23.989 6.435 -4.667 0.887 0.475 C24 A1CDL 21 A1CDL C25 C22 C 0 1 N N R N N N -11.183 23.296 7.507 -5.374 1.610 -0.675 C25 A1CDL 22 A1CDL C26 C23 C 0 1 N N R N N N -11.606 24.160 8.601 -6.484 2.498 -0.105 C26 A1CDL 23 A1CDL C27 C24 C 0 1 N N S N N N -10.543 24.993 9.201 -7.445 1.632 0.715 C27 A1CDL 24 A1CDL C28 C25 C 0 1 N N R N N N -9.881 25.787 8.142 -6.658 0.908 1.812 C28 A1CDL 25 A1CDL C30 C26 C 0 1 N N N N N N -8.748 26.599 8.771 -7.601 -0.005 2.598 C30 A1CDL 26 A1CDL C33 C27 C 0 1 N N S N N N -11.262 25.470 11.457 -9.608 2.643 0.504 C33 A1CDL 27 A1CDL C34 C28 C 0 1 N N R N N N -10.865 26.535 12.498 -10.654 3.439 1.287 C34 A1CDL 28 A1CDL C35 C29 C 0 1 N N S N N N -10.934 25.940 13.854 -11.874 3.682 0.393 C35 A1CDL 29 A1CDL C36 C30 C 0 1 N N R N N N -12.241 25.309 14.159 -11.425 4.406 -0.879 C36 A1CDL 30 A1CDL C37 C31 C 0 1 N N R N N N -12.793 24.423 13.016 -10.349 3.572 -1.579 C37 A1CDL 31 A1CDL C39 C32 C 0 1 N N N N N N -14.304 24.177 13.255 -9.852 4.318 -2.819 C39 A1CDL 32 A1CDL C86 C33 C 0 1 N N R N N N -7.861 21.468 4.717 -2.556 -2.523 -0.655 C86 A1CDL 33 A1CDL C87 C34 C 0 1 N N N N N N -6.646 21.292 3.783 -1.542 -3.429 -1.305 C87 A1CDL 34 A1CDL C88 C35 C 0 1 N N N N N N -6.811 20.485 2.734 -1.661 -4.729 -1.198 C88 A1CDL 35 A1CDL C89 C36 C 0 1 N N N N N N -5.618 20.290 1.786 -0.648 -5.635 -1.848 C89 A1CDL 36 A1CDL C90 C37 C 0 1 N N N N N N -5.746 21.171 0.519 -0.062 -6.581 -0.798 C90 A1CDL 37 A1CDL C91 C38 C 0 1 N N N N N N -4.327 21.417 -0.042 0.967 -7.501 -1.458 C91 A1CDL 38 A1CDL C92 C39 C 0 1 N N N N N N -3.335 21.371 1.148 1.553 -8.447 -0.408 C92 A1CDL 39 A1CDL C93 C40 C 0 1 N N N N N N -1.940 20.855 0.733 2.582 -9.367 -1.067 C93 A1CDL 40 A1CDL C94 C41 C 0 1 N N N N N N -0.959 20.887 1.927 3.168 -10.313 -0.017 C94 A1CDL 41 A1CDL C95 C42 C 0 1 N N N N N N -1.508 21.781 3.068 4.197 -11.233 -0.677 C95 A1CDL 42 A1CDL C96 C43 C 0 1 N N N N N N -0.359 22.397 3.884 4.782 -12.179 0.373 C96 A1CDL 43 A1CDL C97 C44 C 0 1 N N N N N N 0.941 21.628 3.586 5.812 -13.099 -0.287 C97 A1CDL 44 A1CDL C98 C45 C 0 1 N N N N N N 2.054 22.548 3.058 6.397 -14.045 0.763 C98 A1CDL 45 A1CDL C99 C46 C 0 1 N N N N N N 1.910 23.974 3.628 7.427 -14.965 0.104 C99 A1CDL 46 A1CDL CA0 C47 C 0 1 N N N N N N 2.366 24.993 2.569 8.012 -15.912 1.154 CA0 A1CDL 47 A1CDL CA1 C48 C 0 1 N N N N N N 2.528 24.292 1.210 9.041 -16.831 0.494 CA1 A1CDL 48 A1CDL N20 N1 N 0 1 N N N N N N -6.095 21.736 6.542 -0.913 -0.716 -0.521 N20 A1CDL 49 A1CDL O19 O1 O 0 1 N N N N N N -6.083 23.495 8.132 0.358 -0.326 1.255 O19 A1CDL 50 A1CDL O23 O2 O 0 1 N N N N N N -9.464 22.926 5.927 -3.667 0.014 -0.054 O23 A1CDL 51 A1CDL O29 O3 O 0 1 N N N N N N -9.334 25.028 7.005 -5.623 0.125 1.215 O29 A1CDL 52 A1CDL O31 O4 O 0 1 N N N N N N -9.314 27.735 9.393 -6.893 -0.591 3.692 O31 A1CDL 53 A1CDL O32 O5 O 0 1 N N N N N N -11.183 25.987 10.108 -8.444 2.461 1.313 O32 A1CDL 54 A1CDL O38 O6 O 0 1 N N N N N N -12.645 25.045 11.680 -9.257 3.358 -0.683 O38 A1CDL 55 A1CDL O40 O7 O 0 1 N N N N N N -15.021 25.177 12.567 -8.933 3.491 -3.536 O40 A1CDL 56 A1CDL O41 O8 O 0 1 N N N N N N -13.193 26.299 14.472 -10.890 5.686 -0.536 O41 A1CDL 57 A1CDL O42 O9 O 0 1 N N N N N N -10.645 26.983 14.847 -12.826 4.488 1.091 O42 A1CDL 58 A1CDL O83 O10 O 0 1 N N N N N N -9.538 26.943 12.242 -11.050 2.700 2.444 O83 A1CDL 59 A1CDL O84 O11 O 0 1 N N N N N N -12.151 23.286 9.557 -7.197 3.120 -1.176 O84 A1CDL 60 A1CDL O85 O12 O 0 1 N N N N N N -12.328 22.747 6.894 -4.431 2.418 -1.382 O85 A1CDL 61 A1CDL OA2 O13 O 0 1 N N N N N N -8.800 20.462 4.404 -3.474 -3.306 0.109 OA2 A1CDL 62 A1CDL H1 H1 H 0 1 N N N N N N 0.762 14.387 18.804 18.252 11.028 -0.875 H1 A1CDL 63 A1CDL H2 H2 H 0 1 N N N N N N 1.002 15.832 19.844 17.288 12.477 -0.504 H2 A1CDL 64 A1CDL H3 H3 H 0 1 N N N N N N -0.421 15.738 18.751 18.624 11.998 0.570 H3 A1CDL 65 A1CDL H4 H4 H 0 1 N N N N N N 1.094 15.782 16.774 17.394 9.931 1.177 H4 A1CDL 66 A1CDL H5 H5 H 0 1 N N N N N N 2.517 15.877 17.867 16.430 11.381 1.548 H5 A1CDL 67 A1CDL H6 H6 H 0 1 N N N N N N 1.108 18.016 18.781 15.199 11.109 -0.587 H6 A1CDL 68 A1CDL H7 H7 H 0 1 N N N N N N 0.534 17.989 17.079 16.163 9.660 -0.958 H7 A1CDL 69 A1CDL H8 H8 H 0 1 N N N N N N 3.279 17.650 16.792 15.305 8.563 1.094 H8 A1CDL 70 A1CDL H9 H9 H 0 1 N N N N N N 3.172 18.758 18.202 14.341 10.013 1.465 H9 A1CDL 71 A1CDL H10 H10 H 0 1 N N N N N N 3.242 20.290 16.474 13.110 9.741 -0.670 H10 A1CDL 72 A1CDL H11 H11 H 0 1 N N N N N N 1.467 20.065 16.633 14.074 8.292 -1.041 H11 A1CDL 73 A1CDL H12 H12 H 0 1 N N N N N N 1.741 19.892 14.329 13.216 7.195 1.011 H12 A1CDL 74 A1CDL H13 H13 H 0 1 N N N N N N 1.836 18.168 14.824 12.252 8.645 1.382 H13 A1CDL 75 A1CDL H14 H14 H 0 1 N N N N N N 3.833 18.010 13.806 11.021 8.373 -0.753 H14 A1CDL 76 A1CDL H15 H15 H 0 1 N N N N N N 4.497 19.219 14.958 11.985 6.924 -1.124 H15 A1CDL 77 A1CDL H16 H16 H 0 1 N N N N N N 4.861 19.839 12.544 11.127 5.827 0.928 H16 A1CDL 78 A1CDL H17 H17 H 0 1 N N N N N N 3.905 21.058 13.453 10.163 7.277 1.299 H17 A1CDL 79 A1CDL H18 H18 H 0 1 N N N N N N 1.865 19.913 12.628 8.932 7.005 -0.836 H18 A1CDL 80 A1CDL H19 H19 H 0 1 N N N N N N 2.932 18.925 11.574 9.896 5.556 -1.207 H19 A1CDL 81 A1CDL H20 H20 H 0 1 N N N N N N 3.149 21.214 10.287 9.038 4.459 0.845 H20 A1CDL 82 A1CDL H21 H21 H 0 1 N N N N N N 1.564 21.493 11.085 8.074 5.909 1.216 H21 A1CDL 83 A1CDL H22 H22 H 0 1 N N N N N N 1.009 19.043 10.232 6.843 5.637 -0.919 H22 A1CDL 84 A1CDL H23 H23 H 0 1 N N N N N N 2.365 19.332 9.090 7.807 4.188 -1.290 H23 A1CDL 85 A1CDL H24 H24 H 0 1 N N N N N N 1.251 21.222 8.091 6.949 3.091 0.762 H24 A1CDL 86 A1CDL H25 H25 H 0 1 N N N N N N 0.032 21.294 9.408 5.985 4.541 1.133 H25 A1CDL 87 A1CDL H26 H26 H 0 1 N N N N N N 0.095 18.710 7.916 4.754 4.269 -1.002 H26 A1CDL 88 A1CDL H27 H27 H 0 1 N N N N N N -0.369 20.134 6.924 5.718 2.819 -1.373 H27 A1CDL 89 A1CDL H28 H28 H 0 1 N N N N N N -2.367 19.037 7.866 4.860 1.723 0.679 H28 A1CDL 90 A1CDL H29 H29 H 0 1 N N N N N N -1.705 19.216 9.527 3.896 3.173 1.050 H29 A1CDL 91 A1CDL H30 H30 H 0 1 N N N N N N -1.616 21.806 8.820 2.665 2.901 -1.085 H30 A1CDL 92 A1CDL H31 H31 H 0 1 N N N N N N -3.106 21.053 9.483 3.629 1.451 -1.456 H31 A1CDL 93 A1CDL H32 H32 H 0 1 N N N N N N -3.922 20.700 7.121 2.771 0.355 0.596 H32 A1CDL 94 A1CDL H33 H33 H 0 1 N N N N N N -2.475 21.582 6.526 1.807 1.805 0.967 H33 A1CDL 95 A1CDL H34 H34 H 0 1 N N N N N N -3.665 23.220 8.546 0.576 1.533 -1.168 H34 A1CDL 96 A1CDL H35 H35 H 0 1 N N N N N N -3.576 23.523 6.778 1.540 0.083 -1.539 H35 A1CDL 97 A1CDL H36 H36 H 0 1 N N N N N N -7.753 20.430 6.610 -1.283 -2.083 1.026 H36 A1CDL 98 A1CDL H37 H37 H 0 1 N N N N N N -8.080 23.209 7.456 -3.511 -1.227 1.590 H37 A1CDL 99 A1CDL H38 H38 H 0 1 N N N N N N -9.189 21.812 7.664 -2.356 0.126 1.538 H38 A1CDL 100 A1CDL H39 H39 H 0 1 N N N N N N -10.918 24.432 5.648 -4.199 1.620 1.132 H39 A1CDL 101 A1CDL H40 H40 H 0 1 N N N N N N -10.587 22.476 7.934 -5.808 0.876 -1.355 H40 A1CDL 102 A1CDL H41 H41 H 0 1 N N N N N N -12.397 24.828 8.231 -6.045 3.263 0.536 H41 A1CDL 103 A1CDL H42 H42 H 0 1 N N N N N N -9.815 24.375 9.746 -7.921 0.899 0.064 H42 A1CDL 104 A1CDL H43 H43 H 0 1 N N N N N N -10.617 26.504 7.748 -6.216 1.642 2.486 H43 A1CDL 105 A1CDL H44 H44 H 0 1 N N N N N N -8.222 25.988 9.519 -8.439 0.578 2.978 H44 A1CDL 106 A1CDL H45 H45 H 0 1 N N N N N N -8.039 26.915 7.992 -7.973 -0.793 1.943 H45 A1CDL 107 A1CDL H46 H46 H 0 1 N N N N N N -10.589 24.607 11.565 -10.019 1.670 0.234 H46 A1CDL 108 A1CDL H47 H47 H 0 1 N N N N N N -11.559 27.385 12.426 -10.231 4.396 1.593 H47 A1CDL 109 A1CDL H48 H48 H 0 1 N N N N N N -10.155 25.167 13.929 -12.328 2.727 0.128 H48 A1CDL 110 A1CDL H49 H49 H 0 1 N N N N N N -12.105 24.658 15.035 -12.278 4.535 -1.546 H49 A1CDL 111 A1CDL H50 H50 H 0 1 N N N N N N -12.270 23.455 13.034 -10.769 2.612 -1.877 H50 A1CDL 112 A1CDL H51 H51 H 0 1 N N N N N N -14.526 24.232 14.331 -10.699 4.561 -3.461 H51 A1CDL 113 A1CDL H52 H52 H 0 1 N N N N N N -14.586 23.185 12.872 -9.351 5.237 -2.514 H52 A1CDL 114 A1CDL H53 H53 H 0 1 N N N N N N -8.304 22.450 4.494 -3.099 -1.974 -1.425 H53 A1CDL 115 A1CDL H54 H54 H 0 1 N N N N N N -5.709 21.797 3.969 -0.717 -3.006 -1.859 H54 A1CDL 116 A1CDL H55 H55 H 0 1 N N N N N N -7.752 19.985 2.557 -2.487 -5.151 -0.644 H55 A1CDL 117 A1CDL H56 H56 H 0 1 N N N N N N -5.572 19.234 1.483 -1.131 -6.217 -2.633 H56 A1CDL 118 A1CDL H57 H57 H 0 1 N N N N N N -4.693 20.560 2.316 0.152 -5.034 -2.282 H57 A1CDL 119 A1CDL H58 H58 H 0 1 N N N N N N -6.216 22.131 0.779 0.421 -5.999 -0.013 H58 A1CDL 120 A1CDL H59 H59 H 0 1 N N N N N N -6.360 20.654 -0.234 -0.861 -7.182 -0.364 H59 A1CDL 121 A1CDL H60 H60 H 0 1 N N N N N N -4.072 20.635 -0.772 0.484 -8.083 -2.242 H60 A1CDL 122 A1CDL H61 H61 H 0 1 N N N N N N -4.282 22.402 -0.529 1.767 -6.900 -1.891 H61 A1CDL 123 A1CDL H62 H62 H 0 1 N N N N N N -3.228 22.386 1.558 2.036 -7.865 0.377 H62 A1CDL 124 A1CDL H63 H63 H 0 1 N N N N N N -3.742 20.704 1.922 0.753 -9.048 0.026 H63 A1CDL 125 A1CDL H64 H64 H 0 1 N N N N N N -2.032 19.820 0.371 2.099 -9.949 -1.852 H64 A1CDL 126 A1CDL H65 H65 H 0 1 N N N N N N -1.546 21.492 -0.073 3.381 -8.766 -1.501 H65 A1CDL 127 A1CDL H66 H66 H 0 1 N N N N N N -0.819 19.864 2.306 3.651 -9.731 0.767 H66 A1CDL 128 A1CDL H67 H67 H 0 1 N N N N N N 0.008 21.288 1.588 2.368 -10.914 0.416 H67 A1CDL 129 A1CDL H68 H68 H 0 1 N N N N N N -2.114 22.589 2.632 3.714 -11.815 -1.462 H68 A1CDL 130 A1CDL H69 H69 H 0 1 N N N N N N -2.135 21.170 3.734 4.996 -10.632 -1.110 H69 A1CDL 131 A1CDL H70 H70 H 0 1 N N N N N N -0.234 23.454 3.604 5.266 -11.597 1.158 H70 A1CDL 132 A1CDL H71 H71 H 0 1 N N N N N N -0.591 22.327 4.957 3.983 -12.780 0.807 H71 A1CDL 133 A1CDL H72 H72 H 0 1 N N N N N N 0.731 20.857 2.830 5.328 -13.682 -1.071 H72 A1CDL 134 A1CDL H73 H73 H 0 1 N N N N N N 1.289 21.148 4.513 6.611 -12.498 -0.720 H73 A1CDL 135 A1CDL H74 H74 H 0 1 N N N N N N 3.031 22.139 3.356 6.880 -13.463 1.548 H74 A1CDL 136 A1CDL H75 H75 H 0 1 N N N N N N 1.994 22.592 1.961 5.598 -14.646 1.197 H75 A1CDL 137 A1CDL H76 H76 H 0 1 N N N N N N 2.534 24.075 4.528 6.943 -15.548 -0.681 H76 A1CDL 138 A1CDL H77 H77 H 0 1 N N N N N N 0.858 24.161 3.889 8.226 -14.364 -0.330 H77 A1CDL 139 A1CDL H78 H78 H 0 1 N N N N N N 3.329 25.429 2.872 8.495 -15.329 1.938 H78 A1CDL 140 A1CDL H79 H79 H 0 1 N N N N N N 1.614 25.791 2.481 7.213 -16.513 1.587 H79 A1CDL 141 A1CDL H80 H80 H 0 1 N N N N N N 2.854 25.024 0.456 9.458 -17.506 1.242 H80 A1CDL 142 A1CDL H81 H81 H 0 1 N N N N N N 3.281 23.495 1.296 8.558 -17.414 -0.291 H81 A1CDL 143 A1CDL H82 H82 H 0 1 N N N N N N 1.565 23.856 0.905 9.841 -16.230 0.060 H82 A1CDL 144 A1CDL H83 H83 H 0 1 N N N N N N -5.447 21.168 6.035 -1.071 -0.579 -1.468 H83 A1CDL 145 A1CDL H84 H84 H 0 1 N N N N N N -8.626 28.255 9.791 -7.430 -1.184 4.236 H84 A1CDL 146 A1CDL H85 H85 H 0 1 N N N N N N -15.953 25.047 12.699 -8.576 3.900 -4.336 H85 A1CDL 147 A1CDL H86 H86 H 0 1 N N N N N N -12.861 26.847 15.173 -11.517 6.267 -0.085 H86 A1CDL 148 A1CDL H87 H87 H 0 1 N N N N N N -10.687 26.610 15.720 -13.149 4.092 1.913 H87 A1CDL 149 A1CDL H88 H88 H 0 1 N N N N N N -9.280 27.600 12.877 -10.325 2.506 3.054 H88 A1CDL 150 A1CDL H89 H89 H 0 1 N N N N N N -12.451 23.785 10.308 -6.647 3.679 -1.742 H89 A1CDL 151 A1CDL H90 H90 H 0 1 N N N N N N -12.869 22.326 7.552 -3.697 1.921 -1.767 H90 A1CDL 152 A1CDL H91 H91 H 0 1 N N N N N N -9.559 20.550 4.968 -3.074 -3.751 0.869 H91 A1CDL 153 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CDL C91 C90 SING N N 1 A1CDL C91 C92 SING N N 2 A1CDL C90 C89 SING N N 3 A1CDL C93 C92 SING N N 4 A1CDL C93 C94 SING N N 5 A1CDL CA1 CA0 SING N N 6 A1CDL C89 C88 SING N N 7 A1CDL C94 C95 SING N N 8 A1CDL CA0 C99 SING N N 9 A1CDL C88 C87 DOUB N E 10 A1CDL C98 C97 SING N N 11 A1CDL C98 C99 SING N N 12 A1CDL C95 C96 SING N N 13 A1CDL C97 C96 SING N N 14 A1CDL C87 C86 SING N N 15 A1CDL OA2 C86 SING N N 16 A1CDL C86 C21 SING N N 17 A1CDL O23 C24 SING N N 18 A1CDL O23 C22 SING N N 19 A1CDL C21 N20 SING N N 20 A1CDL C21 C22 SING N N 21 A1CDL C24 O29 SING N N 22 A1CDL C24 C25 SING N N 23 A1CDL N20 C18 SING N N 24 A1CDL O85 C25 SING N N 25 A1CDL O29 C28 SING N N 26 A1CDL C16 C17 SING N N 27 A1CDL C16 C15 SING N N 28 A1CDL C18 C17 SING N N 29 A1CDL C18 O19 DOUB N N 30 A1CDL C25 C26 SING N N 31 A1CDL C13 C14 SING N N 32 A1CDL C13 C12 SING N N 33 A1CDL C28 C30 SING N N 34 A1CDL C28 C27 SING N N 35 A1CDL C14 C15 SING N N 36 A1CDL C26 C27 SING N N 37 A1CDL C26 O84 SING N N 38 A1CDL C30 O31 SING N N 39 A1CDL C12 C11 SING N N 40 A1CDL C27 O32 SING N N 41 A1CDL C11 C10 SING N N 42 A1CDL O32 C33 SING N N 43 A1CDL C10 C09 SING N N 44 A1CDL C33 O38 SING N N 45 A1CDL C33 C34 SING N N 46 A1CDL O38 C37 SING N N 47 A1CDL C09 C08 SING N N 48 A1CDL O83 C34 SING N N 49 A1CDL C34 C35 SING N N 50 A1CDL O40 C39 SING N N 51 A1CDL C37 C39 SING N N 52 A1CDL C37 C36 SING N N 53 A1CDL C08 C07 SING N N 54 A1CDL C35 C36 SING N N 55 A1CDL C35 O42 SING N N 56 A1CDL C36 O41 SING N N 57 A1CDL C07 C06 SING N N 58 A1CDL C06 C05 SING N N 59 A1CDL C05 C04 SING N N 60 A1CDL C04 C03 SING N N 61 A1CDL C02 C03 SING N N 62 A1CDL C02 C01 SING N N 63 A1CDL C01 H1 SING N N 64 A1CDL C01 H2 SING N N 65 A1CDL C01 H3 SING N N 66 A1CDL C02 H4 SING N N 67 A1CDL C02 H5 SING N N 68 A1CDL C03 H6 SING N N 69 A1CDL C03 H7 SING N N 70 A1CDL C04 H8 SING N N 71 A1CDL C04 H9 SING N N 72 A1CDL C05 H10 SING N N 73 A1CDL C05 H11 SING N N 74 A1CDL C06 H12 SING N N 75 A1CDL C06 H13 SING N N 76 A1CDL C07 H14 SING N N 77 A1CDL C07 H15 SING N N 78 A1CDL C08 H16 SING N N 79 A1CDL C08 H17 SING N N 80 A1CDL C09 H18 SING N N 81 A1CDL C09 H19 SING N N 82 A1CDL C10 H20 SING N N 83 A1CDL C10 H21 SING N N 84 A1CDL C11 H22 SING N N 85 A1CDL C11 H23 SING N N 86 A1CDL C12 H24 SING N N 87 A1CDL C12 H25 SING N N 88 A1CDL C13 H26 SING N N 89 A1CDL C13 H27 SING N N 90 A1CDL C14 H28 SING N N 91 A1CDL C14 H29 SING N N 92 A1CDL C15 H30 SING N N 93 A1CDL C15 H31 SING N N 94 A1CDL C16 H32 SING N N 95 A1CDL C16 H33 SING N N 96 A1CDL C17 H34 SING N N 97 A1CDL C17 H35 SING N N 98 A1CDL C21 H36 SING N N 99 A1CDL C22 H37 SING N N 100 A1CDL C22 H38 SING N N 101 A1CDL C24 H39 SING N N 102 A1CDL C25 H40 SING N N 103 A1CDL C26 H41 SING N N 104 A1CDL C27 H42 SING N N 105 A1CDL C28 H43 SING N N 106 A1CDL C30 H44 SING N N 107 A1CDL C30 H45 SING N N 108 A1CDL C33 H46 SING N N 109 A1CDL C34 H47 SING N N 110 A1CDL C35 H48 SING N N 111 A1CDL C36 H49 SING N N 112 A1CDL C37 H50 SING N N 113 A1CDL C39 H51 SING N N 114 A1CDL C39 H52 SING N N 115 A1CDL C86 H53 SING N N 116 A1CDL C87 H54 SING N N 117 A1CDL C88 H55 SING N N 118 A1CDL C89 H56 SING N N 119 A1CDL C89 H57 SING N N 120 A1CDL C90 H58 SING N N 121 A1CDL C90 H59 SING N N 122 A1CDL C91 H60 SING N N 123 A1CDL C91 H61 SING N N 124 A1CDL C92 H62 SING N N 125 A1CDL C92 H63 SING N N 126 A1CDL C93 H64 SING N N 127 A1CDL C93 H65 SING N N 128 A1CDL C94 H66 SING N N 129 A1CDL C94 H67 SING N N 130 A1CDL C95 H68 SING N N 131 A1CDL C95 H69 SING N N 132 A1CDL C96 H70 SING N N 133 A1CDL C96 H71 SING N N 134 A1CDL C97 H72 SING N N 135 A1CDL C97 H73 SING N N 136 A1CDL C98 H74 SING N N 137 A1CDL C98 H75 SING N N 138 A1CDL C99 H76 SING N N 139 A1CDL C99 H77 SING N N 140 A1CDL CA0 H78 SING N N 141 A1CDL CA0 H79 SING N N 142 A1CDL CA1 H80 SING N N 143 A1CDL CA1 H81 SING N N 144 A1CDL CA1 H82 SING N N 145 A1CDL N20 H83 SING N N 146 A1CDL O31 H84 SING N N 147 A1CDL O40 H85 SING N N 148 A1CDL O41 H86 SING N N 149 A1CDL O42 H87 SING N N 150 A1CDL O83 H88 SING N N 151 A1CDL O84 H89 SING N N 152 A1CDL O85 H90 SING N N 153 A1CDL OA2 H91 SING N N 154 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CDL SMILES ACDLabs 14.52 "CCCCCCCCCCCCC\C=C\C(O)C(COC1OC(CO)C(OC2OC(CO)C(O)C(O)C2O)C(O)C1O)NC(=O)CCCCCCCCCCCCCCCCC" A1CDL InChI InChI 1.06 "InChI=1S/C48H91NO13/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-40(53)49-36(37(52)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2)35-59-47-45(58)43(56)46(39(34-51)61-47)62-48-44(57)42(55)41(54)38(33-50)60-48/h29,31,36-39,41-48,50-52,54-58H,3-28,30,32-35H2,1-2H3,(H,49,53)/b31-29+/t36-,37+,38+,39+,41-,42-,43+,44+,45+,46+,47+,48-/m0/s1" A1CDL InChIKey InChI 1.06 VOZHMDQUIRUFQW-LOTHNZFDSA-N A1CDL SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)[C@H](O)/C=C/CCCCCCCCCCCCC" A1CDL SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCCCC(=O)N[CH](CO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O)[CH](O)C=CCCCCCCCCCCCCC" A1CDL SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)[C@@H](/C=C/CCCCCCCCCCCCC)O" A1CDL SMILES "OpenEye OEToolkits" 3.1.0.0 "CCCCCCCCCCCCCCCCCC(=O)NC(COC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O)C(C=CCCCCCCCCCCCCC)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CDL "SYSTEMATIC NAME" ACDLabs 14.52 "N-{(2S,3R,4E)-1-[(4-O-beta-D-galactopyranosyl-beta-D-glucopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}octadecanamide" A1CDL "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[(~{E},2~{S},3~{R})-1-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-octadec-4-en-2-yl]octadecanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CDL "Create component" 2025-05-21 RCSB A1CDL "Initial release" 2025-11-19 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1CDL _pdbx_chem_comp_synonyms.name "ganglioside GD3 isomer fragment" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #