data_A1CEE # _chem_comp.id A1CEE _chem_comp.name "(2S)-3-amino-2-{1-[(1R)-1-(7-ethoxynaphthalen-1-yl)ethyl]piperidin-4-yl}-N-(2-oxo-2-{[(2Z)-4,4,4-trifluorobut-2-en-1-yl]amino}ethyl)propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H37 F3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-3-amino-2-{1-[(1R)-1-(7-ethoxynaphthalen-1-yl)ethyl]piperidin-4-yl}-N-{2-oxo-2-[(4,4,4-trifluorobut-2-yn-1-yl)amino]ethyl}propanamide, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-28 _chem_comp.pdbx_modified_date 2026-02-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 534.614 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CEE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9OR4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CEE C11 C1 C 0 1 N N N N N N -7.343 -7.542 -8.393 -10.210 1.387 -0.431 C11 A1CEE 1 A1CEE C12 C2 C 0 1 N N N N N N -8.769 -7.975 -8.114 -10.295 0.042 -1.107 C12 A1CEE 2 A1CEE C22 C3 C 0 1 N N N N N N -1.026 -4.050 1.279 1.895 0.932 -0.855 C22 A1CEE 3 A1CEE C24 C4 C 0 1 N N R N N N -1.131 -1.924 0.459 4.241 0.338 -0.898 C24 A1CEE 4 A1CEE C25 C5 C 0 1 N N N N N N 0.423 -2.024 0.106 4.265 0.917 -2.314 C25 A1CEE 5 A1CEE C29 C6 C 0 1 Y N N N N N -2.451 0.185 4.210 6.934 -3.010 -0.669 C29 A1CEE 6 A1CEE C33 C7 C 0 1 Y N N N N N 1.740 -0.709 3.963 8.376 0.862 -0.022 C33 A1CEE 7 A1CEE C10 C8 C 0 1 N N N N N N -6.371 -8.026 -7.651 -9.282 1.612 0.466 C10 A1CEE 8 A1CEE C19 C9 C 0 1 N N N N N N -2.516 -4.924 -0.973 1.410 -1.180 1.067 C19 A1CEE 9 A1CEE C18 C10 C 0 1 N N N N N N -1.901 -5.911 -0.094 0.340 -0.121 0.790 C18 A1CEE 10 A1CEE C20 C11 C 0 1 N N N N N N -1.777 -3.587 -0.908 2.794 -0.578 0.813 C20 A1CEE 11 A1CEE O16 O1 O 0 1 N N N N N N -4.332 -8.362 -5.144 -5.907 -0.760 1.069 O16 A1CEE 12 A1CEE C26 C12 C 0 1 Y N N N N N -1.485 -1.147 1.863 5.195 -0.826 -0.815 C26 A1CEE 13 A1CEE C27 C13 C 0 1 Y N N N N N -2.900 -0.802 2.024 4.747 -2.094 -1.026 C27 A1CEE 14 A1CEE C30 C14 C 0 1 Y N N N N N -1.025 -0.138 4.078 7.435 -1.715 -0.451 C30 A1CEE 15 A1CEE C28 C15 C 0 1 Y N N N N N -3.371 -0.158 3.166 5.614 -3.182 -0.953 C28 A1CEE 16 A1CEE C23 C16 C 0 1 N N N N N N -1.738 -5.423 1.244 0.484 0.375 -0.652 C23 A1CEE 17 A1CEE C31 C17 C 0 1 Y N N N N N -0.545 -0.793 2.943 6.553 -0.607 -0.525 C31 A1CEE 18 A1CEE C32 C18 C 0 1 Y N N N N N 0.859 -1.080 2.888 7.050 0.687 -0.302 C32 A1CEE 19 A1CEE C35 C19 C 0 1 N N N N N N 3.520 -2.258 4.407 10.253 2.235 0.469 C35 A1CEE 20 A1CEE C36 C20 C 0 1 N N N N N N 5.016 -2.223 4.555 10.607 3.709 0.675 C36 A1CEE 21 A1CEE C37 C21 C 0 1 Y N N N N N 1.238 -0.058 5.091 9.245 -0.232 0.044 C37 A1CEE 22 A1CEE C38 C22 C 0 1 Y N N N N N -0.144 0.247 5.159 8.793 -1.498 -0.162 C38 A1CEE 23 A1CEE C02 C23 C 0 1 N N N N N N -3.076 -7.629 1.292 -1.189 -1.236 2.421 C02 A1CEE 24 A1CEE C03 C24 C 0 1 N N S N N N -2.685 -7.241 -0.127 -1.049 -0.734 0.983 C03 A1CEE 25 A1CEE C04 C25 C 0 1 N N N N N N -3.971 -7.169 -0.965 -2.101 0.309 0.710 C04 A1CEE 26 A1CEE C06 C26 C 0 1 N N N N N N -5.200 -7.252 -3.200 -4.431 1.008 0.554 C06 A1CEE 27 A1CEE C07 C27 C 0 1 N N N N N N -5.288 -8.015 -4.594 -5.798 0.403 0.744 C07 A1CEE 28 A1CEE C09 C28 C 0 1 N N N N N N -6.721 -9.024 -6.511 -8.229 0.568 0.738 C09 A1CEE 29 A1CEE F13 F1 F 0 1 N N N N N N -8.901 -9.342 -8.357 -9.156 -0.157 -1.894 F13 A1CEE 30 A1CEE F14 F2 F 0 1 N N N N N N -9.138 -7.694 -6.853 -10.373 -0.963 -0.137 F14 A1CEE 31 A1CEE F15 F3 F 0 1 N N N N N N -9.603 -7.314 -8.956 -11.435 -0.001 -1.917 F15 A1CEE 32 A1CEE N01 N1 N 0 1 N N N N N N -3.989 -8.784 1.263 -2.474 -1.932 2.575 N01 A1CEE 33 A1CEE N05 N2 N 0 1 N N N N N N -3.928 -7.334 -2.421 -3.407 -0.007 0.819 N05 A1CEE 34 A1CEE N08 N3 N 0 1 N N N N N N -6.635 -8.311 -5.214 -6.900 1.156 0.553 N08 A1CEE 35 A1CEE N21 N4 N 0 1 N N N N N N -1.665 -3.089 0.439 2.882 -0.119 -0.579 N21 A1CEE 36 A1CEE O17 O2 O 0 1 N N N N N N -5.021 -6.995 -0.453 -1.774 1.433 0.393 O17 A1CEE 37 A1CEE O34 O3 O 0 1 N N N N N N 3.107 -0.975 3.897 8.857 2.115 0.188 O34 A1CEE 38 A1CEE H2 H2 H 0 1 N N N N N N 0.013 -4.181 0.941 2.005 1.273 -1.885 H2 A1CEE 39 A1CEE H3 H3 H 0 1 N N N N N N -1.030 -3.675 2.313 2.056 1.769 -0.176 H3 A1CEE 40 A1CEE H4 H4 H 0 1 N N N N N N -1.574 -1.302 -0.333 4.542 1.106 -0.186 H4 A1CEE 41 A1CEE H5 H5 H 0 1 N N N N N N 0.870 -1.019 0.126 3.576 1.759 -2.374 H5 A1CEE 42 A1CEE H6 H6 H 0 1 N N N N N N 0.926 -2.664 0.846 5.274 1.256 -2.550 H6 A1CEE 43 A1CEE H7 H7 H 0 1 N N N N N N 0.544 -2.458 -0.897 3.964 0.149 -3.026 H7 A1CEE 44 A1CEE H8 H8 H 0 1 N N N N N N -2.809 0.684 5.099 7.594 -3.863 -0.617 H8 A1CEE 45 A1CEE H10 H10 H 0 1 N N N N N N -3.561 -4.771 -0.665 1.340 -1.506 2.104 H10 A1CEE 46 A1CEE H11 H11 H 0 1 N N N N N N -2.489 -5.299 -2.007 1.258 -2.033 0.405 H11 A1CEE 47 A1CEE H12 H12 H 0 1 N N N N N N -0.900 -6.130 -0.495 0.468 0.715 1.477 H12 A1CEE 48 A1CEE H13 H13 H 0 1 N N N N N N -0.766 -3.721 -1.321 2.951 0.266 1.484 H13 A1CEE 49 A1CEE H14 H14 H 0 1 N N N N N N -2.325 -2.850 -1.513 3.558 -1.334 0.996 H14 A1CEE 50 A1CEE H15 H15 H 0 1 N N N N N N -3.596 -1.053 1.237 3.704 -2.259 -1.253 H15 A1CEE 51 A1CEE H16 H16 H 0 1 N N N N N N -4.420 0.081 3.264 5.233 -4.178 -1.124 H16 A1CEE 52 A1CEE H17 H17 H 0 1 N N N N N N -2.730 -5.320 1.708 -0.248 1.160 -0.841 H17 A1CEE 53 A1CEE H18 H18 H 0 1 N N N N N N -1.140 -6.148 1.816 0.317 -0.454 -1.340 H18 A1CEE 54 A1CEE H19 H19 H 0 1 N N N N N N 1.263 -1.585 2.023 6.389 1.539 -0.350 H19 A1CEE 55 A1CEE H20 H20 H 0 1 N N N N N N 3.050 -2.443 5.384 10.828 1.837 -0.367 H20 A1CEE 56 A1CEE H21 H21 H 0 1 N N N N N N 3.230 -3.053 3.704 10.491 1.674 1.373 H21 A1CEE 57 A1CEE H22 H22 H 0 1 N N N N N N 5.369 -3.190 4.944 10.032 4.107 1.511 H22 A1CEE 58 A1CEE H23 H23 H 0 1 N N N N N N 5.477 -2.032 3.575 11.672 3.801 0.890 H23 A1CEE 59 A1CEE H24 H24 H 0 1 N N N N N N 5.296 -1.422 5.255 10.369 4.269 -0.229 H24 A1CEE 60 A1CEE H25 H25 H 0 1 N N N N N N 1.896 0.211 5.904 10.290 -0.069 0.266 H25 A1CEE 61 A1CEE H26 H26 H 0 1 N N N N N N -0.540 0.767 6.019 9.475 -2.333 -0.103 H26 A1CEE 62 A1CEE H27 H27 H 0 1 N N N N N N -2.172 -7.893 1.860 -0.374 -1.925 2.647 H27 A1CEE 63 A1CEE H28 H28 H 0 1 N N N N N N -3.578 -6.779 1.777 -1.150 -0.390 3.107 H28 A1CEE 64 A1CEE H29 H29 H 0 1 N N N N N N -2.034 -8.023 -0.545 -1.176 -1.569 0.293 H29 A1CEE 65 A1CEE H30 H30 H 0 1 N N N N N N -5.390 -6.187 -3.400 -4.331 1.365 -0.471 H30 A1CEE 66 A1CEE H31 H31 H 0 1 N N N N N N -5.999 -7.653 -2.559 -4.303 1.842 1.244 H31 A1CEE 67 A1CEE H32 H32 H 0 1 N N N N N N -7.742 -9.408 -6.655 -8.329 0.211 1.763 H32 A1CEE 68 A1CEE H33 H33 H 0 1 N N N N N N -6.009 -9.862 -6.521 -8.357 -0.266 0.048 H33 A1CEE 69 A1CEE H34 H34 H 0 1 N N N N N N -4.242 -9.033 2.198 -2.561 -2.681 1.905 H34 A1CEE 70 A1CEE H35 H35 H 0 1 N N N N N N -4.812 -8.545 0.748 -2.590 -2.273 3.517 H35 A1CEE 71 A1CEE H37 H37 H 0 1 N N N N N N -3.059 -7.499 -2.887 -3.669 -0.905 1.073 H37 A1CEE 72 A1CEE H38 H38 H 0 1 N N N N N N -7.472 -8.025 -4.747 -6.812 2.086 0.293 H38 A1CEE 73 A1CEE H1 H1 H 0 1 N N N N N N -7.128 -6.846 -9.190 -10.911 2.166 -0.689 H1 A1CEE 74 A1CEE H9 H9 H 0 1 N N N N N N -5.347 -7.735 -7.830 -9.271 2.545 1.009 H9 A1CEE 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CEE F15 C12 SING N N 1 A1CEE C11 C12 SING N N 2 A1CEE C11 C10 DOUB N Z 3 A1CEE F13 C12 SING N N 4 A1CEE C12 F14 SING N N 5 A1CEE C10 C09 SING N N 6 A1CEE C09 N08 SING N N 7 A1CEE N08 C07 SING N N 8 A1CEE O16 C07 DOUB N N 9 A1CEE C07 C06 SING N N 10 A1CEE C06 N05 SING N N 11 A1CEE N05 C04 SING N N 12 A1CEE C19 C20 SING N N 13 A1CEE C19 C18 SING N N 14 A1CEE C04 O17 DOUB N N 15 A1CEE C04 C03 SING N N 16 A1CEE C20 N21 SING N N 17 A1CEE C03 C18 SING N N 18 A1CEE C03 C02 SING N N 19 A1CEE C18 C23 SING N N 20 A1CEE C25 C24 SING N N 21 A1CEE N21 C24 SING N N 22 A1CEE N21 C22 SING N N 23 A1CEE C24 C26 SING N N 24 A1CEE C23 C22 SING N N 25 A1CEE N01 C02 SING N N 26 A1CEE C26 C27 DOUB Y N 27 A1CEE C26 C31 SING Y N 28 A1CEE C27 C28 SING Y N 29 A1CEE C32 C31 DOUB Y N 30 A1CEE C32 C33 SING Y N 31 A1CEE C31 C30 SING Y N 32 A1CEE C28 C29 DOUB Y N 33 A1CEE O34 C33 SING N N 34 A1CEE O34 C35 SING N N 35 A1CEE C33 C37 DOUB Y N 36 A1CEE C30 C29 SING Y N 37 A1CEE C30 C38 DOUB Y N 38 A1CEE C35 C36 SING N N 39 A1CEE C37 C38 SING Y N 40 A1CEE C22 H2 SING N N 41 A1CEE C22 H3 SING N N 42 A1CEE C24 H4 SING N N 43 A1CEE C25 H5 SING N N 44 A1CEE C25 H6 SING N N 45 A1CEE C25 H7 SING N N 46 A1CEE C29 H8 SING N N 47 A1CEE C19 H10 SING N N 48 A1CEE C19 H11 SING N N 49 A1CEE C18 H12 SING N N 50 A1CEE C20 H13 SING N N 51 A1CEE C20 H14 SING N N 52 A1CEE C27 H15 SING N N 53 A1CEE C28 H16 SING N N 54 A1CEE C23 H17 SING N N 55 A1CEE C23 H18 SING N N 56 A1CEE C32 H19 SING N N 57 A1CEE C35 H20 SING N N 58 A1CEE C35 H21 SING N N 59 A1CEE C36 H22 SING N N 60 A1CEE C36 H23 SING N N 61 A1CEE C36 H24 SING N N 62 A1CEE C37 H25 SING N N 63 A1CEE C38 H26 SING N N 64 A1CEE C02 H27 SING N N 65 A1CEE C02 H28 SING N N 66 A1CEE C03 H29 SING N N 67 A1CEE C06 H30 SING N N 68 A1CEE C06 H31 SING N N 69 A1CEE C09 H32 SING N N 70 A1CEE C09 H33 SING N N 71 A1CEE N01 H34 SING N N 72 A1CEE N01 H35 SING N N 73 A1CEE N05 H37 SING N N 74 A1CEE N08 H38 SING N N 75 A1CEE C11 H1 SING N N 76 A1CEE C10 H9 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CEE SMILES ACDLabs 14.52 "CC(c1cccc2ccc(OCC)cc21)N1CCC(CC1)C(CN)C(=O)NCC(=O)NC\C=C/C(F)(F)F" A1CEE InChI InChI 1.06 "InChI=1S/C28H37F3N4O3/c1-3-38-22-9-8-20-6-4-7-23(24(20)16-22)19(2)35-14-10-21(11-15-35)25(17-32)27(37)34-18-26(36)33-13-5-12-28(29,30)31/h4-9,12,16,19,21,25H,3,10-11,13-15,17-18,32H2,1-2H3,(H,33,36)(H,34,37)/b12-5-/t19-,25-/m1/s1" A1CEE InChIKey InChI 1.06 OGQIZZHTPOZXCR-MFKWAHDBSA-N A1CEE SMILES_CANONICAL CACTVS 3.385 "CCOc1ccc2cccc([C@@H](C)N3CCC(CC3)[C@@H](CN)C(=O)NCC(=O)NC\C=C/C(F)(F)F)c2c1" A1CEE SMILES CACTVS 3.385 "CCOc1ccc2cccc([CH](C)N3CCC(CC3)[CH](CN)C(=O)NCC(=O)NCC=CC(F)(F)F)c2c1" A1CEE SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCOc1ccc2cccc(c2c1)[C@@H](C)N3CCC(CC3)[C@@H](CN)C(=O)NCC(=O)NC/C=C\C(F)(F)F" A1CEE SMILES "OpenEye OEToolkits" 3.1.0.0 "CCOc1ccc2cccc(c2c1)C(C)N3CCC(CC3)C(CN)C(=O)NCC(=O)NCC=CC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CEE "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-3-amino-2-{1-[(1R)-1-(7-ethoxynaphthalen-1-yl)ethyl]piperidin-4-yl}-N-(2-oxo-2-{[(2Z)-4,4,4-trifluorobut-2-en-1-yl]amino}ethyl)propanamide" A1CEE "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-3-azanyl-2-[1-[(1~{R})-1-(7-ethoxynaphthalen-1-yl)ethyl]piperidin-4-yl]-~{N}-[2-oxidanylidene-2-[[(~{Z})-4,4,4-tris(fluoranyl)but-2-enyl]amino]ethyl]propanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1CEE _pdbx_chem_comp_synonyms.name "(2S)-3-amino-2-{1-[(1R)-1-(7-ethoxynaphthalen-1-yl)ethyl]piperidin-4-yl}-N-{2-oxo-2-[(4,4,4-trifluorobut-2-yn-1-yl)amino]ethyl}propanamide, bound form" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1CEE _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C10 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CEE "Create component" 2025-05-28 RCSB A1CEE "Modify value order" 2025-06-06 RCSB A1CEE "Initial release" 2026-02-25 RCSB #