data_A1CGY # _chem_comp.id A1CGY _chem_comp.name "(1R,3S)-3-{(5M)-5-{2-[2-methyl-5-(propan-2-yl)phenoxy]pyrimidin-4-yl}-4-[4-(trifluoromethyl)phenyl]-1H-imidazol-1-yl}cyclopentan-1-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H30 F3 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-06-16 _chem_comp.pdbx_modified_date 2026-06-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 521.577 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CGY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9P34 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CGY N1 N1 N 0 1 Y N N N N N 14.201 1.331 11.644 0.890 -2.004 1.063 N1 A1CGY 1 A1CGY N3 N2 N 0 1 Y N N N N N 12.577 7.048 9.271 -4.017 1.631 -0.495 N3 A1CGY 2 A1CGY C4 C1 C 0 1 Y N N N N N 13.133 0.247 6.209 4.790 -2.897 -0.580 C4 A1CGY 3 A1CGY C5 C2 C 0 1 Y N N N N N 13.177 0.238 7.592 3.664 -2.143 -0.845 C5 A1CGY 4 A1CGY C6 C3 C 0 1 Y N N N N N 14.354 0.448 8.253 3.213 -1.219 0.088 C6 A1CGY 5 A1CGY C7 C4 C 0 1 Y N N N N N 14.105 1.503 10.333 0.915 -0.925 0.297 C7 A1CGY 6 A1CGY C8 C5 C 0 1 Y N N N N N 13.971 2.412 12.399 -0.252 -2.476 1.541 C8 A1CGY 7 A1CGY C10 C6 C 0 1 Y N N N N N 13.606 3.703 10.434 -1.376 -0.689 0.419 C10 A1CGY 8 A1CGY C13 C7 C 0 1 N N S N N N 14.691 4.619 7.616 -4.253 -1.891 0.129 C13 A1CGY 9 A1CGY C15 C8 C 0 1 N N R N N N 16.106 4.582 5.760 -6.129 -3.331 -0.467 C15 A1CGY 10 A1CGY C17 C9 C 0 1 N N N N N N 13.864 4.041 6.452 -5.173 -2.020 1.356 C17 A1CGY 11 A1CGY C20 C10 C 0 1 Y N N N N N 11.377 7.432 11.878 -1.630 3.438 -1.123 C20 A1CGY 12 A1CGY C21 C11 C 0 1 Y N N N N N 10.535 7.597 12.958 -0.605 4.361 -1.111 C21 A1CGY 13 A1CGY C22 C12 C 0 1 Y N N N N N 9.917 6.503 13.523 0.426 4.242 -0.197 C22 A1CGY 14 A1CGY C24 C13 C 0 1 Y N N N N N 10.107 5.245 12.982 0.438 3.197 0.709 C24 A1CGY 15 A1CGY C26 C14 C 0 1 Y N N N N N 15.531 0.679 7.568 3.897 -1.056 1.284 C26 A1CGY 16 A1CGY C28 C15 C 0 1 Y N N N N N 15.490 0.696 6.175 5.023 -1.813 1.544 C28 A1CGY 17 A1CGY C1 C16 C 0 1 N N N N N N 11.202 1.333 5.009 6.702 -3.537 -2.024 C1 A1CGY 18 A1CGY C11 C17 C 0 1 Y N N N N N 13.288 4.974 9.778 -2.607 0.038 0.060 C11 A1CGY 19 A1CGY C12 C18 C 0 1 Y N N N N N 13.341 6.608 8.306 -4.698 0.522 -0.408 C12 A1CGY 20 A1CGY C14 C19 C 0 1 N N N N N N 15.768 5.468 6.951 -5.061 -2.395 -1.084 C14 A1CGY 21 A1CGY C16 C20 C 0 1 N N N N N N 14.755 4.145 5.209 -6.509 -2.598 0.845 C16 A1CGY 22 A1CGY C18 C21 C 0 1 Y N N N N N 12.517 6.032 10.203 -2.724 1.389 -0.216 C18 A1CGY 23 A1CGY C19 C22 C 0 1 Y N N N N N 11.639 6.173 11.371 -1.627 2.385 -0.208 C19 A1CGY 24 A1CGY C2 C23 C 0 1 N N N N N N 11.832 0.017 5.471 5.280 -3.900 -1.593 C2 A1CGY 25 A1CGY C23 C24 C 0 1 N N N N N N 8.963 6.690 14.655 1.543 5.255 -0.190 C23 A1CGY 26 A1CGY C25 C25 C 0 1 Y N N N N N 10.956 5.088 11.900 -0.581 2.267 0.707 C25 A1CGY 27 A1CGY C27 C26 C 0 1 N N N N N N 16.817 0.914 8.301 3.411 -0.054 2.300 C27 A1CGY 28 A1CGY C29 C27 C 0 1 Y N N N N N 14.301 0.479 5.507 5.473 -2.728 0.610 C29 A1CGY 29 A1CGY C3 C28 C 0 1 N N N N N N 10.831 -0.809 6.250 5.276 -5.297 -0.970 C3 A1CGY 30 A1CGY C9 C29 C 0 1 Y N N N N N 13.695 3.635 11.825 -1.434 -1.829 1.232 C9 A1CGY 31 A1CGY F1 F1 F 0 1 N N N N N N 7.696 6.719 14.236 2.723 4.645 0.250 F1 A1CGY 32 A1CGY F2 F2 F 0 1 N N N N N N 8.968 5.674 15.508 1.730 5.753 -1.483 F2 A1CGY 33 A1CGY F3 F3 F 0 1 N N N N N N 9.104 7.847 15.303 1.213 6.306 0.672 F3 A1CGY 34 A1CGY N2 N3 N 0 1 Y N N N N N 13.819 5.358 8.545 -3.873 -0.490 -0.068 N2 A1CGY 35 A1CGY N4 N4 N 0 1 Y N N N N N 13.817 2.613 9.673 -0.188 -0.273 -0.025 N4 A1CGY 36 A1CGY N5 N5 N 0 1 N N N N N N 16.904 5.283 4.753 -7.292 -3.452 -1.357 N5 A1CGY 37 A1CGY O1 O1 O 0 1 N N N N N N 14.368 0.383 9.645 2.105 -0.476 -0.170 O1 A1CGY 38 A1CGY H8 H1 H 0 1 N N N N N N 12.272 0.063 8.155 3.134 -2.271 -1.777 H8 A1CGY 39 A1CGY H9 H2 H 0 1 N N N N N N 14.002 2.325 13.475 -0.260 -3.358 2.165 H9 A1CGY 40 A1CGY H12 H3 H 0 1 N N N N N N 15.174 3.787 8.150 -3.361 -2.504 0.265 H12 A1CGY 41 A1CGY H15 H4 H 0 1 N N N N N N 16.651 3.695 6.116 -5.706 -4.312 -0.252 H15 A1CGY 42 A1CGY H19 H5 H 0 1 N N N N N N 12.942 4.624 6.311 -4.729 -2.696 2.086 H19 A1CGY 43 A1CGY H18 H6 H 0 1 N N N N N N 13.606 2.990 6.651 -5.336 -1.041 1.805 H18 A1CGY 44 A1CGY H20 H7 H 0 1 N N N N N N 11.837 8.297 11.423 -2.435 3.532 -1.837 H20 A1CGY 45 A1CGY H21 H8 H 0 1 N N N N N N 10.360 8.584 13.361 -0.609 5.179 -1.817 H21 A1CGY 46 A1CGY H22 H9 H 0 1 N N N N N N 9.596 4.390 13.401 1.246 3.109 1.420 H22 A1CGY 47 A1CGY H27 H10 H 0 1 N N N N N N 16.394 0.880 5.614 5.555 -1.686 2.475 H27 A1CGY 48 A1CGY H1 H11 H 0 1 N N N N N N 10.261 1.124 4.479 7.359 -3.548 -1.154 H1 A1CGY 49 A1CGY H3 H12 H 0 1 N N N N N N 10.996 1.968 5.884 7.056 -4.262 -2.756 H3 A1CGY 50 A1CGY H2 H13 H 0 1 N N N N N N 11.896 1.854 4.333 6.705 -2.541 -2.468 H2 A1CGY 51 A1CGY H11 H14 H 0 1 N N N N N N 13.568 7.176 7.416 -5.760 0.428 -0.580 H11 A1CGY 52 A1CGY H13 H15 H 0 1 N N N N N N 16.637 5.615 7.610 -5.536 -1.560 -1.599 H13 A1CGY 53 A1CGY H14 H16 H 0 1 N N N N N N 15.378 6.447 6.634 -4.418 -2.949 -1.768 H14 A1CGY 54 A1CGY H17 H17 H 0 1 N N N N N N 14.359 4.892 4.506 -7.219 -1.796 0.642 H17 A1CGY 55 A1CGY H16 H18 H 0 1 N N N N N N 14.835 3.172 4.703 -6.923 -3.300 1.569 H16 A1CGY 56 A1CGY H4 H19 H 0 1 N N N N N N 12.077 -0.552 4.562 4.622 -3.888 -2.463 H4 A1CGY 57 A1CGY H23 H20 H 0 1 N N N N N N 11.088 4.109 11.463 -0.569 1.449 1.412 H23 A1CGY 58 A1CGY H24 H21 H 0 1 N N N N N N 16.937 1.990 8.496 2.707 -0.536 2.978 H24 A1CGY 59 A1CGY H26 H22 H 0 1 N N N N N N 16.800 0.368 9.256 4.259 0.328 2.867 H26 A1CGY 60 A1CGY H25 H23 H 0 1 N N N N N N 17.658 0.556 7.689 2.915 0.771 1.788 H25 A1CGY 61 A1CGY H28 H24 H 0 1 N N N N N N 14.284 0.491 4.427 6.353 -3.319 0.815 H28 A1CGY 62 A1CGY H6 H25 H 0 1 N N N N N N 11.302 -1.749 6.573 5.933 -5.308 -0.100 H6 A1CGY 63 A1CGY H5 H26 H 0 1 N N N N N N 10.498 -0.244 7.133 4.263 -5.556 -0.663 H5 A1CGY 64 A1CGY H7 H27 H 0 1 N N N N N N 9.965 -1.034 5.611 5.630 -6.022 -1.702 H7 A1CGY 65 A1CGY H10 H28 H 0 1 N N N N N N 13.552 4.515 12.434 -2.378 -2.193 1.608 H10 A1CGY 66 A1CGY H29 H29 H 0 1 N N N N N N 17.781 5.553 5.151 -7.991 -4.061 -0.958 H29 A1CGY 67 A1CGY H30 H30 H 0 1 N N N N N N 17.064 4.677 3.974 -7.681 -2.545 -1.568 H30 A1CGY 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CGY N5 C15 SING N N 1 A1CGY C1 C2 SING N N 2 A1CGY C16 C15 SING N N 3 A1CGY C16 C17 SING N N 4 A1CGY C2 C4 SING N N 5 A1CGY C2 C3 SING N N 6 A1CGY C29 C28 DOUB Y N 7 A1CGY C29 C4 SING Y N 8 A1CGY C15 C14 SING N N 9 A1CGY C28 C26 SING Y N 10 A1CGY C4 C5 DOUB Y N 11 A1CGY C17 C13 SING N N 12 A1CGY C14 C13 SING N N 13 A1CGY C26 C6 DOUB Y N 14 A1CGY C26 C27 SING N N 15 A1CGY C5 C6 SING Y N 16 A1CGY C13 N2 SING N N 17 A1CGY C6 O1 SING N N 18 A1CGY C12 N2 SING Y N 19 A1CGY C12 N3 DOUB Y N 20 A1CGY N2 C11 SING Y N 21 A1CGY N3 C18 SING Y N 22 A1CGY O1 C7 SING N N 23 A1CGY N4 C7 DOUB Y N 24 A1CGY N4 C10 SING Y N 25 A1CGY C11 C18 DOUB Y N 26 A1CGY C11 C10 SING N N 27 A1CGY C18 C19 SING N N 28 A1CGY C7 N1 SING Y N 29 A1CGY C10 C9 DOUB Y N 30 A1CGY C19 C20 DOUB Y N 31 A1CGY C19 C25 SING Y N 32 A1CGY N1 C8 DOUB Y N 33 A1CGY C9 C8 SING Y N 34 A1CGY C20 C21 SING Y N 35 A1CGY C25 C24 DOUB Y N 36 A1CGY C21 C22 DOUB Y N 37 A1CGY C24 C22 SING Y N 38 A1CGY C22 C23 SING N N 39 A1CGY F1 C23 SING N N 40 A1CGY C23 F3 SING N N 41 A1CGY C23 F2 SING N N 42 A1CGY C5 H8 SING N N 43 A1CGY C8 H9 SING N N 44 A1CGY C13 H12 SING N N 45 A1CGY C15 H15 SING N N 46 A1CGY C17 H19 SING N N 47 A1CGY C17 H18 SING N N 48 A1CGY C20 H20 SING N N 49 A1CGY C21 H21 SING N N 50 A1CGY C24 H22 SING N N 51 A1CGY C28 H27 SING N N 52 A1CGY C1 H1 SING N N 53 A1CGY C1 H3 SING N N 54 A1CGY C1 H2 SING N N 55 A1CGY C12 H11 SING N N 56 A1CGY C14 H13 SING N N 57 A1CGY C14 H14 SING N N 58 A1CGY C16 H17 SING N N 59 A1CGY C16 H16 SING N N 60 A1CGY C2 H4 SING N N 61 A1CGY C25 H23 SING N N 62 A1CGY C27 H24 SING N N 63 A1CGY C27 H26 SING N N 64 A1CGY C27 H25 SING N N 65 A1CGY C29 H28 SING N N 66 A1CGY C3 H6 SING N N 67 A1CGY C3 H5 SING N N 68 A1CGY C3 H7 SING N N 69 A1CGY C9 H10 SING N N 70 A1CGY N5 H29 SING N N 71 A1CGY N5 H30 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CGY SMILES ACDLabs 14.52 "CC(C)c1cc(Oc2nccc(n2)c2c(ncn2C2CC(N)CC2)c2ccc(cc2)C(F)(F)F)c(C)cc1" A1CGY InChI InChI 1.06 "InChI=1S/C29H30F3N5O/c1-17(2)20-5-4-18(3)25(14-20)38-28-34-13-12-24(36-28)27-26(19-6-8-21(9-7-19)29(30,31)32)35-16-37(27)23-11-10-22(33)15-23/h4-9,12-14,16-17,22-23H,10-11,15,33H2,1-3H3/t22-,23+/m1/s1" A1CGY InChIKey InChI 1.06 QWXTUUVVXCVDTF-PKTZIBPZSA-N A1CGY SMILES_CANONICAL CACTVS 3.385 "CC(C)c1ccc(C)c(Oc2nccc(n2)c3n(cnc3c4ccc(cc4)C(F)(F)F)[C@H]5CC[C@@H](N)C5)c1" A1CGY SMILES CACTVS 3.385 "CC(C)c1ccc(C)c(Oc2nccc(n2)c3n(cnc3c4ccc(cc4)C(F)(F)F)[CH]5CC[CH](N)C5)c1" A1CGY SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(cc1Oc2nccc(n2)c3c(ncn3[C@H]4CC[C@H](C4)N)c5ccc(cc5)C(F)(F)F)C(C)C" A1CGY SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1ccc(cc1Oc2nccc(n2)c3c(ncn3C4CCC(C4)N)c5ccc(cc5)C(F)(F)F)C(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CGY "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,3S)-3-{(5M)-5-{2-[2-methyl-5-(propan-2-yl)phenoxy]pyrimidin-4-yl}-4-[4-(trifluoromethyl)phenyl]-1H-imidazol-1-yl}cyclopentan-1-amine" A1CGY "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},3~{S})-3-[5-[2-(2-methyl-5-propan-2-yl-phenoxy)pyrimidin-4-yl]-4-[4-(trifluoromethyl)phenyl]imidazol-1-yl]cyclopentan-1-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CGY "Create component" 2025-06-16 RCSB A1CGY "Initial release" 2026-06-17 RCSB #