data_A1CIF # _chem_comp.id A1CIF _chem_comp.name "(3R,4R)-4-({(4M)-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-1,3-benzimidazol-6-yl]pyrimidin-2-yl}amino)-1-(methanesulfonyl)piperidin-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 F2 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-14 _chem_comp.pdbx_modified_date 2025-12-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.531 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CIF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9PE9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CIF F1 F1 F 0 1 N N N N N N 128.528 4.063 127.035 -2.187 -3.525 1.113 F1 A1CIF 1 A1CIF C12 C1 C 0 1 Y N N N N N 129.016 3.410 128.102 -1.222 -2.676 0.698 C12 A1CIF 2 A1CIF C13 C2 C 0 1 Y N N N N N 130.355 3.106 128.091 0.117 -3.017 0.802 C13 A1CIF 3 A1CIF N2 N1 N 0 1 Y N N N N N 130.963 2.486 129.104 1.037 -2.162 0.384 N2 A1CIF 4 A1CIF C14 C3 C 0 1 Y N N N N N 130.181 2.186 130.157 0.696 -0.989 -0.129 C14 A1CIF 5 A1CIF N4 N2 N 0 1 N N N N N N 130.812 1.640 131.215 1.691 -0.124 -0.554 N4 A1CIF 6 A1CIF C15 C4 C 0 1 N N R N N N 130.252 1.427 132.537 3.099 -0.511 -0.432 C15 A1CIF 7 A1CIF C19 C5 C 0 1 N N R N N N 129.467 0.122 132.668 3.928 0.247 -1.472 C19 A1CIF 8 A1CIF O O1 O 0 1 N N N N N N 128.297 0.263 131.865 3.437 -0.051 -2.781 O A1CIF 9 A1CIF C18 C6 C 0 1 N N N N N N 128.980 -0.063 134.093 5.394 -0.186 -1.364 C18 A1CIF 10 A1CIF N5 N3 N 0 1 N N N N N N 130.149 -0.045 134.991 5.843 0.006 0.021 N5 A1CIF 11 A1CIF S S1 S 0 1 N N N N N N 129.989 -0.783 136.429 7.201 0.895 0.352 S A1CIF 12 A1CIF O2 O2 O 0 1 N N N N N N 131.285 -0.803 137.025 7.986 0.786 -0.827 O2 A1CIF 13 A1CIF C20 C7 C 0 1 N N N N N N 128.948 0.224 137.412 6.593 2.591 0.558 C20 A1CIF 14 A1CIF O1 O3 O 0 1 N N N N N N 129.320 -2.020 136.183 7.665 0.377 1.592 O1 A1CIF 15 A1CIF C17 C8 C 0 1 N N N N N N 130.855 1.251 134.987 5.064 -0.604 1.107 C17 A1CIF 16 A1CIF C16 C9 C 0 1 N N N N N N 131.373 1.504 133.578 3.602 -0.167 0.972 C16 A1CIF 17 A1CIF N3 N4 N 0 1 Y N N N N N 128.856 2.409 130.267 -0.570 -0.622 -0.248 N3 A1CIF 18 A1CIF C11 C10 C 0 1 Y N N N N N 128.228 3.022 129.244 -1.551 -1.433 0.146 C11 A1CIF 19 A1CIF C8 C11 C 0 1 Y N N N N N 126.757 3.193 129.404 -2.968 -1.022 0.007 C8 A1CIF 20 A1CIF C9 C12 C 0 1 Y N N N N N 125.979 3.661 128.335 -3.945 -1.978 -0.293 C9 A1CIF 21 A1CIF C10 C13 C 0 1 Y N N N N N 124.622 3.835 128.502 -5.254 -1.613 -0.424 C10 A1CIF 22 A1CIF F F2 F 0 1 N N N N N N 123.904 4.392 127.510 -6.188 -2.545 -0.713 F A1CIF 23 A1CIF C2 C14 C 0 1 Y N N N N N 123.974 3.550 129.681 -5.628 -0.273 -0.259 C2 A1CIF 24 A1CIF N N5 N 0 1 Y N N N N N 122.642 3.661 130.071 -6.816 0.379 -0.331 N A1CIF 25 A1CIF C7 C15 C 0 1 Y N N N N N 126.128 2.910 130.621 -3.323 0.311 0.179 C7 A1CIF 26 A1CIF C3 C16 C 0 1 Y N N N N N 124.753 3.100 130.735 -4.650 0.690 0.042 C3 A1CIF 27 A1CIF N1 N6 N 0 1 Y N N N N N 123.863 2.956 131.808 -5.319 1.894 0.141 N1 A1CIF 28 A1CIF C4 C17 C 0 1 N N N N N N 124.196 2.607 133.209 -4.721 3.198 0.442 C4 A1CIF 29 A1CIF C6 C18 C 0 1 N N N N N N 125.139 3.627 133.822 -4.032 3.141 1.807 C6 A1CIF 30 A1CIF C5 C19 C 0 1 N N N N N N 124.702 1.182 133.317 -3.692 3.547 -0.635 C5 A1CIF 31 A1CIF C1 C20 C 0 1 Y N N N N N 122.615 3.295 131.332 -6.634 1.647 -0.101 C1 A1CIF 32 A1CIF C C21 C 0 1 N N N N N N 121.389 3.215 132.168 -7.724 2.688 -0.096 C A1CIF 33 A1CIF H14 H1 H 0 1 N N N N N N 130.941 3.380 127.226 0.406 -3.970 1.219 H14 A1CIF 34 A1CIF H15 H2 H 0 1 N N N N N N 131.102 0.734 130.906 1.456 0.738 -0.932 H15 A1CIF 35 A1CIF H H3 H 0 1 N N N N N N 129.554 2.250 132.750 3.197 -1.583 -0.600 H A1CIF 36 A1CIF H1 H4 H 0 1 N N N N N N 130.084 -0.733 132.354 3.850 1.318 -1.289 H1 A1CIF 37 A1CIF H22 H5 H 0 1 N N N N N N 128.548 0.382 130.957 3.917 0.396 -3.492 H22 A1CIF 38 A1CIF H20 H6 H 0 1 N N N N N N 128.456 -1.026 134.184 5.485 -1.238 -1.636 H20 A1CIF 39 A1CIF H21 H7 H 0 1 N N N N N N 128.294 0.754 134.360 6.003 0.419 -2.036 H21 A1CIF 40 A1CIF H23 H8 H 0 1 N N N N N N 128.813 -0.241 138.399 5.876 2.623 1.379 H23 A1CIF 41 A1CIF H24 H9 H 0 1 N N N N N N 129.407 1.216 137.534 7.430 3.253 0.782 H24 A1CIF 42 A1CIF H25 H10 H 0 1 N N N N N N 127.970 0.331 136.920 6.107 2.918 -0.361 H25 A1CIF 43 A1CIF H18 H11 H 0 1 N N N N N N 131.697 1.219 135.694 5.129 -1.690 1.038 H18 A1CIF 44 A1CIF H19 H12 H 0 1 N N N N N N 130.162 2.054 135.279 5.459 -0.275 2.069 H19 A1CIF 45 A1CIF H16 H13 H 0 1 N N N N N N 132.135 0.748 133.338 3.528 0.909 1.132 H16 A1CIF 46 A1CIF H17 H14 H 0 1 N N N N N N 131.826 2.506 133.540 2.997 -0.688 1.714 H17 A1CIF 47 A1CIF H13 H15 H 0 1 N N N N N N 126.441 3.884 127.385 -3.661 -3.012 -0.422 H13 A1CIF 48 A1CIF H12 H16 H 0 1 N N N N N N 126.702 2.549 131.462 -2.570 1.048 0.415 H12 A1CIF 49 A1CIF H5 H17 H 0 1 N N N N N N 123.261 2.655 133.786 -5.501 3.960 0.460 H5 A1CIF 50 A1CIF H10 H18 H 0 1 N N N N N N 125.366 3.340 134.859 -3.193 2.447 1.761 H10 A1CIF 51 A1CIF H11 H19 H 0 1 N N N N N N 126.071 3.662 133.239 -3.669 4.134 2.072 H11 A1CIF 52 A1CIF H9 H20 H 0 1 N N N N N N 124.663 4.619 133.812 -4.744 2.801 2.559 H9 A1CIF 53 A1CIF H6 H21 H 0 1 N N N N N N 124.940 0.955 134.367 -4.183 3.588 -1.607 H6 A1CIF 54 A1CIF H7 H22 H 0 1 N N N N N N 123.926 0.489 132.959 -3.247 4.517 -0.412 H7 A1CIF 55 A1CIF H8 H23 H 0 1 N N N N N N 125.608 1.067 132.703 -2.912 2.786 -0.653 H8 A1CIF 56 A1CIF H2 H24 H 0 1 N N N N N N 120.515 3.509 131.568 -8.073 2.845 0.924 H2 A1CIF 57 A1CIF H3 H25 H 0 1 N N N N N N 121.257 2.184 132.527 -7.333 3.624 -0.494 H3 A1CIF 58 A1CIF H4 H26 H 0 1 N N N N N N 121.487 3.893 133.028 -8.554 2.348 -0.716 H4 A1CIF 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CIF C C1 SING N N 1 A1CIF C1 N DOUB Y N 2 A1CIF N C2 SING Y N 3 A1CIF C2 C3 DOUB Y N 4 A1CIF N1 C3 SING Y N 5 A1CIF C1 N1 SING Y N 6 A1CIF C4 N1 SING N N 7 A1CIF C5 C4 SING N N 8 A1CIF C6 C4 SING N N 9 A1CIF C3 C7 SING Y N 10 A1CIF C7 C8 DOUB Y N 11 A1CIF C9 C8 SING Y N 12 A1CIF C10 C9 DOUB Y N 13 A1CIF C2 C10 SING Y N 14 A1CIF F C10 SING N N 15 A1CIF C8 C11 SING N N 16 A1CIF C11 C12 DOUB Y N 17 A1CIF C13 C12 SING Y N 18 A1CIF N2 C13 DOUB Y N 19 A1CIF C14 N2 SING Y N 20 A1CIF N3 C14 DOUB Y N 21 A1CIF C11 N3 SING Y N 22 A1CIF N4 C14 SING N N 23 A1CIF C15 N4 SING N N 24 A1CIF C15 C16 SING N N 25 A1CIF C16 C17 SING N N 26 A1CIF C17 N5 SING N N 27 A1CIF N5 C18 SING N N 28 A1CIF C18 C19 SING N N 29 A1CIF C19 C15 SING N N 30 A1CIF O C19 SING N N 31 A1CIF S N5 SING N N 32 A1CIF O1 S DOUB N N 33 A1CIF O2 S DOUB N N 34 A1CIF C20 S SING N N 35 A1CIF C12 F1 SING N N 36 A1CIF C13 H14 SING N N 37 A1CIF N4 H15 SING N N 38 A1CIF C15 H SING N N 39 A1CIF C19 H1 SING N N 40 A1CIF O H22 SING N N 41 A1CIF C18 H20 SING N N 42 A1CIF C18 H21 SING N N 43 A1CIF C20 H23 SING N N 44 A1CIF C20 H24 SING N N 45 A1CIF C20 H25 SING N N 46 A1CIF C17 H18 SING N N 47 A1CIF C17 H19 SING N N 48 A1CIF C16 H16 SING N N 49 A1CIF C16 H17 SING N N 50 A1CIF C9 H13 SING N N 51 A1CIF C7 H12 SING N N 52 A1CIF C4 H5 SING N N 53 A1CIF C6 H10 SING N N 54 A1CIF C6 H11 SING N N 55 A1CIF C6 H9 SING N N 56 A1CIF C5 H6 SING N N 57 A1CIF C5 H7 SING N N 58 A1CIF C5 H8 SING N N 59 A1CIF C H2 SING N N 60 A1CIF C H3 SING N N 61 A1CIF C H4 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CIF SMILES ACDLabs 14.52 "OC1CN(CCC1Nc1nc(c2cc(F)c3nc(C)n(C(C)C)c3c2)c(F)cn1)S(=O)(C)=O" A1CIF InChI InChI 1.06 "InChI=1S/C21H26F2N6O3S/c1-11(2)29-12(3)25-20-14(22)7-13(8-17(20)29)19-15(23)9-24-21(27-19)26-16-5-6-28(10-18(16)30)33(4,31)32/h7-9,11,16,18,30H,5-6,10H2,1-4H3,(H,24,26,27)/t16-,18-/m1/s1" A1CIF InChIKey InChI 1.06 UKVZKVRVVNTCMR-SJLPKXTDSA-N A1CIF SMILES_CANONICAL CACTVS 3.385 "CC(C)n1c(C)nc2c(F)cc(cc12)c3nc(N[C@@H]4CCN(C[C@H]4O)[S](C)(=O)=O)ncc3F" A1CIF SMILES CACTVS 3.385 "CC(C)n1c(C)nc2c(F)cc(cc12)c3nc(N[CH]4CCN(C[CH]4O)[S](C)(=O)=O)ncc3F" A1CIF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1nc2c(n1C(C)C)cc(cc2F)c3c(cnc(n3)N[C@@H]4CCN(C[C@H]4O)S(=O)(=O)C)F" A1CIF SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1nc2c(n1C(C)C)cc(cc2F)c3c(cnc(n3)NC4CCN(CC4O)S(=O)(=O)C)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CIF "SYSTEMATIC NAME" ACDLabs 14.52 "(3R,4R)-4-({(4M)-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-1,3-benzimidazol-6-yl]pyrimidin-2-yl}amino)-1-(methanesulfonyl)piperidin-3-ol" A1CIF "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R},4~{R})-4-[[5-fluoranyl-4-(7-fluoranyl-2-methyl-3-propan-2-yl-benzimidazol-5-yl)pyrimidin-2-yl]amino]-1-methylsulfonyl-piperidin-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CIF "Create component" 2025-07-14 RCSB A1CIF "Initial release" 2025-12-17 RCSB #