data_A1CII # _chem_comp.id A1CII _chem_comp.name "1-[(4aR,10P,13R)-10-[5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl]-11-chloro-9-fluoro-1,2,4a,5-tetrahydropyrazino[1',2':4,5][1,4]oxazino[2,3-c]quinolin-3(4H)-yl]prop-2-en-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H20 Cl F5 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-14 _chem_comp.pdbx_modified_date 2026-03-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 538.897 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CII _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9PIZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CII C4 C1 C 0 1 Y N N N N N -8.421 27.183 42.846 3.296 -0.199 -0.467 C4 A1CII 1 A1CII C5 C2 C 0 1 Y N N N N N -8.506 26.163 41.887 4.032 -0.674 -1.550 C5 A1CII 2 A1CII C6 C3 C 0 1 Y N N N N N -7.408 25.402 41.501 5.386 -0.392 -1.641 C6 A1CII 3 A1CII C7 C4 C 0 1 Y N N N N N -6.174 25.666 42.098 6.006 0.364 -0.650 C7 A1CII 4 A1CII C10 C5 C 0 1 Y N N N N N -9.705 27.908 43.119 1.847 -0.497 -0.365 C10 A1CII 5 A1CII C13 C6 C 0 1 Y N N N N N -12.139 29.287 43.515 -0.877 -1.023 -0.196 C13 A1CII 6 A1CII C15 C7 C 0 1 Y N N N N N -10.544 27.522 44.150 1.427 -1.643 0.288 C15 A1CII 7 A1CII C20 C8 C 0 1 Y N N N N N -13.370 29.971 43.740 -2.256 -1.314 -0.099 C20 A1CII 8 A1CII C22 C9 C 0 1 N N N N N N -13.160 32.288 43.438 -3.419 0.668 0.309 C22 A1CII 9 A1CII C26 C10 C 0 1 N N R N N N -15.246 31.115 42.969 -4.429 -1.145 -0.958 C26 A1CII 10 A1CII C1 C11 C 0 1 N N N N N N -4.691 26.902 43.640 5.951 1.653 1.495 C1 A1CII 11 A1CII C11 C12 C 0 1 Y N N N N N -10.093 28.974 42.284 0.913 0.389 -0.926 C11 A1CII 12 A1CII C12 C13 C 0 1 Y N N N N N -11.266 29.644 42.472 -0.421 0.135 -0.845 C12 A1CII 13 A1CII C14 C14 C 0 1 Y N N N N N -11.770 28.209 44.365 0.052 -1.923 0.382 C14 A1CII 14 A1CII C18 C15 C 0 1 Y N N N N N -13.727 28.473 45.592 -1.662 -3.310 1.090 C18 A1CII 15 A1CII C19 C16 C 0 1 Y N N N N N -14.156 29.541 44.800 -2.641 -2.473 0.550 C19 A1CII 16 A1CII C2 C17 C 0 1 Y N N N N N -6.062 26.670 43.045 5.274 0.835 0.425 C2 A1CII 17 A1CII C23 C18 C 0 1 N N N N N N -13.618 33.526 42.655 -4.398 1.681 -0.286 C23 A1CII 18 A1CII C25 C19 C 0 1 N N N N N N -15.744 32.279 42.124 -5.485 -0.205 -1.521 C25 A1CII 19 A1CII C27 C20 C 0 1 N N N N N N -15.750 31.306 44.391 -4.926 -1.843 0.310 C27 A1CII 20 A1CII C29 C21 C 0 1 N N N N N N -15.833 34.665 42.766 -6.838 1.372 -0.231 C29 A1CII 21 A1CII C3 C22 C 0 1 Y N N N N N -7.165 27.431 43.432 3.926 0.553 0.524 C3 A1CII 22 A1CII C31 C23 C 0 1 N N N N N N -17.324 34.619 42.611 -6.963 2.619 0.540 C31 A1CII 23 A1CII C32 C24 C 0 1 N N N N N N -17.989 35.679 43.097 -8.167 3.073 0.878 C32 A1CII 24 A1CII C34 C25 C 0 1 N N N N N N -6.939 28.508 44.457 3.134 1.063 1.700 C34 A1CII 25 A1CII F16 F1 F 0 1 N N N N N N -10.156 26.496 44.940 2.332 -2.487 0.830 F16 A1CII 26 A1CII F35 F2 F 0 1 N N N N N N -5.918 29.342 43.981 1.809 1.286 1.309 F35 A1CII 27 A1CII F36 F3 F 0 1 N N N N N N -8.068 29.307 44.649 3.163 0.115 2.728 F36 A1CII 28 A1CII F37 F4 F 0 1 N N N N N N -6.548 27.910 45.661 3.694 2.261 2.155 F37 A1CII 29 A1CII F8 F5 F 0 1 N N N N N N -5.065 24.960 41.765 7.326 0.638 -0.738 F8 A1CII 30 A1CII N17 N1 N 0 1 Y N N N N N -12.589 27.853 45.367 -0.384 -3.024 1.003 N17 A1CII 31 A1CII N21 N2 N 0 1 N N N N N N -13.773 31.032 42.957 -3.187 -0.430 -0.644 N21 A1CII 32 A1CII N24 N3 N 0 1 N N N N N N -15.089 33.537 42.541 -5.628 0.964 -0.661 N24 A1CII 33 A1CII N9 N4 N 0 1 N N N N N N -7.555 24.393 40.529 6.128 -0.867 -2.726 N9 A1CII 34 A1CII O28 O1 O 0 1 N N N N N N -15.362 30.124 45.110 -3.950 -2.830 0.667 O28 A1CII 35 A1CII O30 O2 O 0 1 N N N N N N -15.254 35.698 43.085 -7.827 0.710 -0.481 O30 A1CII 36 A1CII CL3 CL1 CL 0 0 N N N N N N -9.044 29.455 40.984 1.467 1.824 -1.731 CL3 A1CII 37 A1CII H1 H1 H 0 1 N N N N N N -9.463 25.960 41.430 3.549 -1.260 -2.318 H1 A1CII 38 A1CII H2 H2 H 0 1 N N N N N N -12.067 32.201 43.346 -2.473 1.163 0.527 H2 A1CII 39 A1CII H3 H3 H 0 1 N N N N N N -13.429 32.425 44.496 -3.836 0.263 1.232 H3 A1CII 40 A1CII H4 H4 H 0 1 N N N N N N -15.667 30.181 42.567 -4.209 -1.906 -1.707 H4 A1CII 41 A1CII H5 H5 H 0 1 N N N N N N -4.148 27.643 43.034 5.900 2.709 1.231 H5 A1CII 42 A1CII H6 H6 H 0 1 N N N N N N -4.797 27.276 44.669 5.448 1.492 2.448 H6 A1CII 43 A1CII H7 H7 H 0 1 N N N N N N -4.131 25.955 43.650 6.994 1.349 1.579 H7 A1CII 44 A1CII H8 H8 H 0 1 N N N N N N -11.527 30.458 41.812 -1.130 0.824 -1.281 H8 A1CII 45 A1CII H9 H9 H 0 1 N N N N N N -14.348 28.147 46.413 -1.965 -4.210 1.602 H9 A1CII 46 A1CII H10 H10 H 0 1 N N N N N N -13.175 33.504 41.648 -4.630 2.448 0.454 H10 A1CII 47 A1CII H11 H11 H 0 1 N N N N N N -13.287 34.433 43.182 -3.957 2.144 -1.169 H11 A1CII 48 A1CII H12 H12 H 0 1 N N N N N N -16.832 32.378 42.250 -5.189 0.113 -2.520 H12 A1CII 49 A1CII H13 H13 H 0 1 N N N N N N -15.513 32.084 41.066 -6.437 -0.734 -1.576 H13 A1CII 50 A1CII H14 H14 H 0 1 N N N N N N -15.290 32.197 44.843 -5.031 -1.116 1.115 H14 A1CII 51 A1CII H15 H15 H 0 1 N N N N N N -16.845 31.415 44.397 -5.885 -2.324 0.116 H15 A1CII 52 A1CII H16 H16 H 0 1 N N N N N N -17.829 33.789 42.140 -6.078 3.165 0.831 H16 A1CII 53 A1CII H17 H17 H 0 1 N N N N N N -19.066 35.721 43.024 -9.052 2.527 0.587 H17 A1CII 54 A1CII H18 H18 H 0 1 N N N N N N -17.447 36.490 43.561 -8.258 3.989 1.444 H18 A1CII 55 A1CII H19 H19 H 0 1 N N N N N N -6.673 23.949 40.373 5.696 -1.394 -3.416 H19 A1CII 56 A1CII H20 H20 H 0 1 N N N N N N -8.217 23.716 40.849 7.076 -0.669 -2.789 H20 A1CII 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CII N9 C6 SING N N 1 A1CII CL3 C11 SING N N 2 A1CII C6 C5 DOUB Y N 3 A1CII C6 C7 SING Y N 4 A1CII F8 C7 SING N N 5 A1CII C5 C4 SING Y N 6 A1CII C7 C2 DOUB Y N 7 A1CII C25 N24 SING N N 8 A1CII C25 C26 SING N N 9 A1CII C11 C12 DOUB Y N 10 A1CII C11 C10 SING Y N 11 A1CII C12 C13 SING Y N 12 A1CII N24 C23 SING N N 13 A1CII N24 C29 SING N N 14 A1CII C31 C29 SING N N 15 A1CII C31 C32 DOUB N N 16 A1CII C23 C22 SING N N 17 A1CII C29 O30 DOUB N N 18 A1CII C4 C10 SING N N 19 A1CII C4 C3 DOUB Y N 20 A1CII N21 C26 SING N N 21 A1CII N21 C22 SING N N 22 A1CII N21 C20 SING N N 23 A1CII C26 C27 SING N N 24 A1CII C2 C3 SING Y N 25 A1CII C2 C1 SING N N 26 A1CII C10 C15 DOUB Y N 27 A1CII C3 C34 SING N N 28 A1CII C13 C20 DOUB Y N 29 A1CII C13 C14 SING Y N 30 A1CII C20 C19 SING Y N 31 A1CII F35 C34 SING N N 32 A1CII C15 C14 SING Y N 33 A1CII C15 F16 SING N N 34 A1CII C14 N17 DOUB Y N 35 A1CII C27 O28 SING N N 36 A1CII C34 F36 SING N N 37 A1CII C34 F37 SING N N 38 A1CII C19 O28 SING N N 39 A1CII C19 C18 DOUB Y N 40 A1CII N17 C18 SING Y N 41 A1CII C5 H1 SING N N 42 A1CII C22 H2 SING N N 43 A1CII C22 H3 SING N N 44 A1CII C26 H4 SING N N 45 A1CII C1 H5 SING N N 46 A1CII C1 H6 SING N N 47 A1CII C1 H7 SING N N 48 A1CII C12 H8 SING N N 49 A1CII C18 H9 SING N N 50 A1CII C23 H10 SING N N 51 A1CII C23 H11 SING N N 52 A1CII C25 H12 SING N N 53 A1CII C25 H13 SING N N 54 A1CII C27 H14 SING N N 55 A1CII C27 H15 SING N N 56 A1CII C31 H16 SING N N 57 A1CII C32 H17 SING N N 58 A1CII C32 H18 SING N N 59 A1CII N9 H19 SING N N 60 A1CII N9 H20 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CII SMILES ACDLabs 14.52 "FC(F)(F)c1c(C)c(F)c(N)cc1c1c(Cl)cc2c3c(cnc2c1F)OCC1CN(CCN13)C(=O)C=C" A1CII InChI InChI 1.06 "InChI=1S/C25H20ClF5N4O2/c1-3-18(36)34-4-5-35-12(9-34)10-37-17-8-33-23-14(24(17)35)6-15(26)19(22(23)28)13-7-16(32)21(27)11(2)20(13)25(29,30)31/h3,6-8,12H,1,4-5,9-10,32H2,2H3/t12-/m1/s1" A1CII InChIKey InChI 1.06 DNDDKPAWCOTOAU-GFCCVEGCSA-N A1CII SMILES_CANONICAL CACTVS 3.385 "Cc1c(F)c(N)cc(c2c(Cl)cc3c(ncc4OC[C@H]5CN(CCN5c34)C(=O)C=C)c2F)c1C(F)(F)F" A1CII SMILES CACTVS 3.385 "Cc1c(F)c(N)cc(c2c(Cl)cc3c(ncc4OC[CH]5CN(CCN5c34)C(=O)C=C)c2F)c1C(F)(F)F" A1CII SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(cc(c1F)N)c2c(cc3c(c2F)ncc4c3N5CCN(C[C@@H]5CO4)C(=O)C=C)Cl)C(F)(F)F" A1CII SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(cc(c1F)N)c2c(cc3c(c2F)ncc4c3N5CCN(CC5CO4)C(=O)C=C)Cl)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CII "SYSTEMATIC NAME" ACDLabs 14.52 "1-[(4aR,10P,13R)-10-[5-amino-4-fluoro-3-methyl-2-(trifluoromethyl)phenyl]-11-chloro-9-fluoro-1,2,4a,5-tetrahydropyrazino[1',2':4,5][1,4]oxazino[2,3-c]quinolin-3(4H)-yl]prop-2-en-1-one" A1CII "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-[(7~{R})-15-[5-azanyl-4-fluoranyl-3-methyl-2-(trifluoromethyl)phenyl]-16-chloranyl-14-fluoranyl-9-oxa-2,5,12-triazatetracyclo[8.8.0.0^{2,7}.0^{13,18}]octadeca-1(18),10,12,14,16-pentaen-5-yl]prop-2-en-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CII "Create component" 2025-07-14 RCSB A1CII "Modify PCM" 2025-07-14 RCSB A1CII "Initial release" 2026-03-11 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1CII _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C32 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #