data_A1CIK # _chem_comp.id A1CIK _chem_comp.name "(3S,4R)-1-{(2P)-2-(6-chloroquinolin-4-yl)-1-[(1R)-1-(naphthalen-1-yl)ethyl]-1H-1,3-benzimidazole-6-carbonyl}-N-methyl-4-[3-(trifluoromethyl)phenyl]pyrrolidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C42 H33 Cl F3 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-14 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 732.192 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CIK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9PEL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CIK C10 C1 C 0 1 Y N N N N N 147.230 146.227 118.531 4.817 -3.607 -0.116 C10 A1CIK 1 A1CIK C13 C2 C 0 1 Y N N N N N 145.710 147.015 116.844 7.120 -3.023 0.207 C13 A1CIK 2 A1CIK C17 C3 C 0 1 Y N N N N N 144.703 150.361 119.123 5.957 0.614 1.852 C17 A1CIK 3 A1CIK C20 C4 C 0 1 Y N N N N N 146.191 149.150 124.553 0.127 -0.405 2.483 C20 A1CIK 4 A1CIK C21 C5 C 0 1 Y N N N N N 147.110 149.587 125.499 -0.911 0.465 2.337 C21 A1CIK 5 A1CIK C22 C6 C 0 1 Y N N N N N 148.219 150.333 125.088 -0.705 1.731 1.771 C22 A1CIK 6 A1CIK C26 C7 C 0 1 N N R N N N 152.497 149.082 125.729 -4.552 0.698 0.249 C26 A1CIK 7 A1CIK C28 C8 C 0 1 Y N N N N N 154.183 149.572 123.919 -6.389 -0.049 1.776 C28 A1CIK 8 A1CIK C01 C9 C 0 1 N N N N N N 147.724 152.359 120.115 2.677 3.549 0.288 C01 A1CIK 9 A1CIK C02 C10 C 0 1 N N R N N N 148.359 151.039 120.559 3.677 2.430 0.587 C02 A1CIK 10 A1CIK C04 C11 C 0 1 Y N N N N N 147.469 150.182 122.761 1.628 1.232 1.498 C04 A1CIK 11 A1CIK C05 C12 C 0 1 Y N N N N N 148.401 150.630 123.738 0.569 2.111 1.352 C05 A1CIK 12 A1CIK C06 C13 C 0 1 Y N N N N N 146.258 149.683 121.024 3.528 0.104 1.573 C06 A1CIK 13 A1CIK C07 C14 C 0 1 Y N N N N N 145.643 149.471 119.642 4.955 -0.253 1.432 C07 A1CIK 14 A1CIK C08 C15 C 0 1 Y N N N N N 145.982 148.307 118.872 5.347 -1.494 0.867 C08 A1CIK 15 A1CIK C09 C16 C 0 1 Y N N N N N 146.922 147.329 119.325 4.400 -2.424 0.420 C09 A1CIK 16 A1CIK C12 C17 C 0 1 Y N N N N N 146.621 146.071 117.288 6.175 -3.905 -0.219 C12 A1CIK 17 A1CIK C14 C18 C 0 1 Y N N N N N 145.395 148.147 117.653 6.728 -1.791 0.760 C14 A1CIK 18 A1CIK C16 C19 C 0 1 Y N N N N N 144.150 150.123 117.866 7.290 0.246 1.704 C16 A1CIK 19 A1CIK C19 C20 C 0 1 Y N N N N N 146.386 149.458 123.184 1.416 -0.037 2.072 C19 A1CIK 20 A1CIK C23 C21 C 0 1 N N N N N N 149.240 150.800 126.138 -1.839 2.662 1.618 C23 A1CIK 21 A1CIK C25 C22 C 0 1 N N N N N N 151.207 149.626 125.105 -3.517 0.766 1.393 C25 A1CIK 22 A1CIK C27 C23 C 0 1 Y N N N N N 153.447 148.673 124.679 -5.674 -0.242 0.610 C27 A1CIK 23 A1CIK C29 C24 C 0 1 Y N N N N N 155.057 149.126 122.944 -7.414 -0.915 2.110 C29 A1CIK 24 A1CIK C30 C25 C 0 1 Y N N N N N 155.200 147.772 122.709 -7.722 -1.974 1.277 C30 A1CIK 25 A1CIK C31 C26 C 0 1 Y N N N N N 154.468 146.864 123.453 -7.007 -2.167 0.110 C31 A1CIK 26 A1CIK C32 C27 C 0 1 N N N N N N 154.627 145.368 123.192 -7.343 -3.322 -0.798 C32 A1CIK 27 A1CIK C36 C28 C 0 1 Y N N N N N 153.595 147.314 124.432 -5.986 -1.298 -0.226 C36 A1CIK 28 A1CIK C37 C29 C 0 1 N N S N N N 152.949 150.264 126.688 -5.086 2.139 0.108 C37 A1CIK 29 A1CIK C38 C30 C 0 1 N N N N N N 153.807 149.622 127.894 -4.786 2.676 -1.268 C38 A1CIK 30 A1CIK C40 C31 C 0 1 N N N N N N 155.932 150.964 127.412 -4.877 4.446 -2.940 C40 A1CIK 31 A1CIK C42 C32 C 0 1 N N N N N N 151.820 150.806 127.100 -4.326 2.952 1.178 C42 A1CIK 32 A1CIK C44 C33 C 0 1 Y N N N N N 148.921 150.187 119.392 4.327 1.980 -0.696 C44 A1CIK 33 A1CIK C45 C34 C 0 1 Y N N N N N 148.533 150.427 118.068 5.665 2.149 -0.880 C45 A1CIK 34 A1CIK C46 C35 C 0 1 Y N N N N N 149.040 149.666 117.021 6.284 1.734 -2.058 C46 A1CIK 35 A1CIK C47 C36 C 0 1 Y N N N N N 149.949 148.658 117.270 5.570 1.149 -3.057 C47 A1CIK 36 A1CIK C48 C37 C 0 1 Y N N N N N 150.365 148.396 118.600 4.186 0.958 -2.903 C48 A1CIK 37 A1CIK C49 C38 C 0 1 Y N N N N N 149.875 149.132 119.641 3.556 1.380 -1.706 C49 A1CIK 38 A1CIK C50 C39 C 0 1 Y N N N N N 150.333 148.815 120.960 2.173 1.185 -1.549 C50 A1CIK 39 A1CIK C51 C40 C 0 1 Y N N N N N 151.249 147.797 121.175 1.458 0.600 -2.549 C51 A1CIK 40 A1CIK C52 C41 C 0 1 Y N N N N N 151.737 147.058 120.104 2.077 0.190 -3.729 C52 A1CIK 41 A1CIK C53 C42 C 0 1 Y N N N N N 151.304 147.348 118.821 3.415 0.358 -3.913 C53 A1CIK 42 A1CIK F33 F1 F 0 1 N N N N N N 154.405 144.672 124.341 -8.405 -4.051 -0.251 F33 A1CIK 43 A1CIK F34 F2 F 0 1 N N N N N N 155.889 145.115 122.751 -7.711 -2.835 -2.056 F34 A1CIK 44 A1CIK F35 F3 F 0 1 N N N N N N 153.733 144.968 122.249 -6.225 -4.153 -0.928 F35 A1CIK 45 A1CIK N03 N1 N 0 1 Y N N N N N 147.384 150.311 121.395 2.976 1.300 1.202 N03 A1CIK 46 A1CIK N15 N2 N 0 1 Y N N N N N 144.497 149.051 117.180 7.636 -0.908 1.185 N15 A1CIK 47 A1CIK N18 N3 N 0 1 Y N N N N N 145.661 149.160 122.086 2.604 -0.670 2.089 N18 A1CIK 48 A1CIK N24 N4 N 0 1 N N N N N N 150.642 150.386 126.049 -3.083 2.183 1.420 N24 A1CIK 49 A1CIK N39 N5 N 0 1 N N N N N N 155.193 149.981 128.183 -5.168 3.924 -1.602 N39 A1CIK 50 A1CIK O41 O1 O 0 1 N N N N N N 153.305 148.797 128.584 -4.201 1.985 -2.075 O41 A1CIK 51 A1CIK O43 O2 O 0 1 N N N N N N 148.886 151.477 127.039 -1.652 3.862 1.672 O43 A1CIK 52 A1CIK CL11 CL1 CL 0 0 N N N N N N 148.403 145.008 119.101 3.642 -4.759 -0.669 CL11 A1CIK 53 A1CIK H131 H1 H 0 0 N N N N N N 145.236 146.894 115.881 8.168 -3.269 0.120 H131 A1CIK 54 A1CIK H171 H2 H 0 0 N N N N N N 144.405 151.229 119.692 5.702 1.568 2.290 H171 A1CIK 55 A1CIK H201 H3 H 0 0 N N N N N N 145.329 148.576 124.861 -0.043 -1.378 2.920 H201 A1CIK 56 A1CIK H211 H4 H 0 0 N N N N N N 146.969 149.352 126.544 -1.900 0.176 2.659 H211 A1CIK 57 A1CIK H261 H5 H 0 0 N N N N N N 152.246 148.213 126.355 -4.074 0.379 -0.677 H261 A1CIK 58 A1CIK H281 H6 H 0 0 N N N N N N 154.072 150.632 124.091 -6.145 0.776 2.429 H281 A1CIK 59 A1CIK H011 H7 H 0 0 N N N N N N 147.351 152.902 120.996 3.205 4.406 -0.130 H011 A1CIK 60 A1CIK H013 H8 H 0 0 N N N N N N 148.477 152.972 119.598 1.937 3.192 -0.429 H013 A1CIK 61 A1CIK H012 H9 H 0 0 N N N N N N 146.887 152.152 119.431 2.176 3.845 1.209 H012 A1CIK 62 A1CIK H021 H10 H 0 0 N N N N N N 149.215 151.297 121.200 4.440 2.799 1.272 H021 A1CIK 63 A1CIK H051 H11 H 0 0 N N N N N N 149.260 151.207 123.430 0.728 3.085 0.912 H051 A1CIK 64 A1CIK H091 H12 H 0 0 N N N N N N 147.396 147.446 120.288 3.345 -2.205 0.499 H091 A1CIK 65 A1CIK H121 H13 H 0 0 N N N N N N 146.859 145.216 116.672 6.482 -4.849 -0.642 H121 A1CIK 66 A1CIK H161 H14 H 0 0 N N N N N N 143.435 150.819 117.452 8.061 0.926 2.032 H161 A1CIK 67 A1CIK H252 H15 H 0 0 N N N N N N 151.436 150.228 124.214 -3.980 0.493 2.341 H252 A1CIK 68 A1CIK H251 H16 H 0 0 N N N N N N 150.537 148.799 124.826 -2.671 0.113 1.179 H251 A1CIK 69 A1CIK H291 H17 H 0 0 N N N N N N 155.628 149.837 122.366 -7.973 -0.764 3.021 H291 A1CIK 70 A1CIK H301 H18 H 0 0 N N N N N N 155.881 147.424 121.947 -8.523 -2.651 1.538 H301 A1CIK 71 A1CIK H361 H19 H 0 0 N N N N N N 153.024 146.601 125.008 -5.427 -1.449 -1.138 H361 A1CIK 72 A1CIK H371 H20 H 0 0 N N N N N N 153.589 150.961 126.127 -6.158 2.167 0.301 H371 A1CIK 73 A1CIK H402 H21 H 0 0 N N N N N N 156.949 151.061 127.819 -5.356 3.815 -3.688 H402 A1CIK 74 A1CIK H401 H22 H 0 0 N N N N N N 155.987 150.641 126.362 -5.259 5.464 -3.024 H401 A1CIK 75 A1CIK H403 H23 H 0 0 N N N N N N 155.420 151.936 127.470 -3.799 4.449 -3.102 H403 A1CIK 76 A1CIK H422 H24 H 0 0 N N N N N N 151.921 151.901 127.129 -4.090 3.947 0.803 H422 A1CIK 77 A1CIK H421 H25 H 0 0 N N N N N N 151.573 150.434 128.105 -4.916 3.021 2.092 H421 A1CIK 78 A1CIK H451 H26 H 0 0 N N N N N N 147.828 151.217 117.857 6.255 2.611 -0.103 H451 A1CIK 79 A1CIK H461 H27 H 0 0 N N N N N N 148.721 149.864 116.008 7.348 1.880 -2.179 H461 A1CIK 80 A1CIK H471 H28 H 0 0 N N N N N N 150.343 148.070 116.454 6.063 0.833 -3.964 H471 A1CIK 81 A1CIK H501 H29 H 0 0 N N N N N N 149.958 149.379 121.802 1.680 1.497 -0.641 H501 A1CIK 82 A1CIK H511 H30 H 0 0 N N N N N N 151.584 147.578 122.178 0.395 0.451 -2.427 H511 A1CIK 83 A1CIK H521 H31 H 0 0 N N N N N N 152.449 146.263 120.271 1.487 -0.272 -4.506 H521 A1CIK 84 A1CIK H531 H32 H 0 0 N N N N N N 151.680 146.777 117.985 3.882 0.032 -4.831 H531 A1CIK 85 A1CIK H391 H33 H 0 0 N N N N N N 155.654 149.529 128.947 -5.636 4.477 -0.957 H391 A1CIK 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CIK C13 C12 DOUB Y N 1 A1CIK C13 C14 SING Y N 2 A1CIK C46 C47 DOUB Y N 3 A1CIK C46 C45 SING Y N 4 A1CIK N15 C14 SING Y N 5 A1CIK N15 C16 DOUB Y N 6 A1CIK C47 C48 SING Y N 7 A1CIK C12 C10 SING Y N 8 A1CIK C14 C08 DOUB Y N 9 A1CIK C16 C17 SING Y N 10 A1CIK C45 C44 DOUB Y N 11 A1CIK C10 CL11 SING N N 12 A1CIK C10 C09 DOUB Y N 13 A1CIK C48 C53 SING Y N 14 A1CIK C48 C49 DOUB Y N 15 A1CIK C53 C52 DOUB Y N 16 A1CIK C08 C09 SING Y N 17 A1CIK C08 C07 SING Y N 18 A1CIK C17 C07 DOUB Y N 19 A1CIK C44 C49 SING Y N 20 A1CIK C44 C02 SING N N 21 A1CIK C49 C50 SING Y N 22 A1CIK C07 C06 SING N N 23 A1CIK C52 C51 SING Y N 24 A1CIK C01 C02 SING N N 25 A1CIK C02 N03 SING N N 26 A1CIK C50 C51 DOUB Y N 27 A1CIK C06 N03 SING Y N 28 A1CIK C06 N18 DOUB Y N 29 A1CIK N03 C04 SING Y N 30 A1CIK N18 C19 SING Y N 31 A1CIK F35 C32 SING N N 32 A1CIK C30 C29 DOUB Y N 33 A1CIK C30 C31 SING Y N 34 A1CIK F34 C32 SING N N 35 A1CIK C04 C19 DOUB Y N 36 A1CIK C04 C05 SING Y N 37 A1CIK C29 C28 SING Y N 38 A1CIK C19 C20 SING Y N 39 A1CIK C32 C31 SING N N 40 A1CIK C32 F33 SING N N 41 A1CIK C31 C36 DOUB Y N 42 A1CIK C05 C22 DOUB Y N 43 A1CIK C28 C27 DOUB Y N 44 A1CIK C36 C27 SING Y N 45 A1CIK C20 C21 DOUB Y N 46 A1CIK C27 C26 SING N N 47 A1CIK C22 C21 SING Y N 48 A1CIK C22 C23 SING N N 49 A1CIK C25 C26 SING N N 50 A1CIK C25 N24 SING N N 51 A1CIK C26 C37 SING N N 52 A1CIK N24 C23 SING N N 53 A1CIK N24 C42 SING N N 54 A1CIK C23 O43 DOUB N N 55 A1CIK C37 C42 SING N N 56 A1CIK C37 C38 SING N N 57 A1CIK C40 N39 SING N N 58 A1CIK C38 N39 SING N N 59 A1CIK C38 O41 DOUB N N 60 A1CIK C13 H131 SING N N 61 A1CIK C17 H171 SING N N 62 A1CIK C20 H201 SING N N 63 A1CIK C21 H211 SING N N 64 A1CIK C26 H261 SING N N 65 A1CIK C28 H281 SING N N 66 A1CIK C01 H011 SING N N 67 A1CIK C01 H013 SING N N 68 A1CIK C01 H012 SING N N 69 A1CIK C02 H021 SING N N 70 A1CIK C05 H051 SING N N 71 A1CIK C09 H091 SING N N 72 A1CIK C12 H121 SING N N 73 A1CIK C16 H161 SING N N 74 A1CIK C25 H252 SING N N 75 A1CIK C25 H251 SING N N 76 A1CIK C29 H291 SING N N 77 A1CIK C30 H301 SING N N 78 A1CIK C36 H361 SING N N 79 A1CIK C37 H371 SING N N 80 A1CIK C40 H402 SING N N 81 A1CIK C40 H401 SING N N 82 A1CIK C40 H403 SING N N 83 A1CIK C42 H422 SING N N 84 A1CIK C42 H421 SING N N 85 A1CIK C45 H451 SING N N 86 A1CIK C46 H461 SING N N 87 A1CIK C47 H471 SING N N 88 A1CIK C50 H501 SING N N 89 A1CIK C51 H511 SING N N 90 A1CIK C52 H521 SING N N 91 A1CIK C53 H531 SING N N 92 A1CIK N39 H391 SING N N 93 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CIK SMILES ACDLabs 14.52 "O=C(NC)C1CN(CC1c1cccc(c1)C(F)(F)F)C(=O)c1ccc2nc(c3ccnc4ccc(Cl)cc43)n(C(C)c3cccc4ccccc43)c2c1" A1CIK InChI InChI 1.06 "InChI=1S/C42H33ClF3N5O2/c1-24(30-12-6-8-25-7-3-4-11-31(25)30)51-38-20-27(13-15-37(38)49-39(51)32-17-18-48-36-16-14-29(43)21-33(32)36)41(53)50-22-34(35(23-50)40(52)47-2)26-9-5-10-28(19-26)42(44,45)46/h3-21,24,34-35H,22-23H2,1-2H3,(H,47,52)/t24-,34+,35-/m1/s1" A1CIK InChIKey InChI 1.06 KCZFDLCTPOKDPP-LYORWDPXSA-N A1CIK SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@@H]1CN(C[C@H]1c2cccc(c2)C(F)(F)F)C(=O)c3ccc4nc(n([C@H](C)c5cccc6ccccc56)c4c3)c7ccnc8ccc(Cl)cc78" A1CIK SMILES CACTVS 3.385 "CNC(=O)[CH]1CN(C[CH]1c2cccc(c2)C(F)(F)F)C(=O)c3ccc4nc(n([CH](C)c5cccc6ccccc56)c4c3)c7ccnc8ccc(Cl)cc78" A1CIK SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H](c1cccc2c1cccc2)n3c4cc(ccc4nc3c5ccnc6c5cc(cc6)Cl)C(=O)N7C[C@H]([C@@H](C7)C(=O)NC)c8cccc(c8)C(F)(F)F" A1CIK SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(c1cccc2c1cccc2)n3c4cc(ccc4nc3c5ccnc6c5cc(cc6)Cl)C(=O)N7CC(C(C7)C(=O)NC)c8cccc(c8)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CIK "SYSTEMATIC NAME" ACDLabs 14.52 "(3S,4R)-1-{(2P)-2-(6-chloroquinolin-4-yl)-1-[(1R)-1-(naphthalen-1-yl)ethyl]-1H-1,3-benzimidazole-6-carbonyl}-N-methyl-4-[3-(trifluoromethyl)phenyl]pyrrolidine-3-carboxamide" A1CIK "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S},4~{R})-1-[2-(6-chloranylquinolin-4-yl)-3-[(1~{R})-1-naphthalen-1-ylethyl]benzimidazol-5-yl]carbonyl-~{N}-methyl-4-[3-(trifluoromethyl)phenyl]pyrrolidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CIK "Create component" 2025-07-14 RCSB A1CIK "Initial release" 2026-08-12 RCSB #