data_A1CIM # _chem_comp.id A1CIM _chem_comp.name "(2S,4S,5S,6S)-5-carbamoyl-4-hydroxy-6-{(1S)-1-hydroxy-1-[(2R,4S,5R)-4,5,6-trihydroxy-2-methoxyhexanamido]ethyl}-2-methoxyoxane-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H30 N2 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-15 _chem_comp.pdbx_modified_date 2026-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 454.426 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CIM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9PIM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CIM C1 C1 C 0 1 N N N N N N 220.138 231.591 104.023 -2.941 1.634 3.398 C1 A1CIM 1 A1CIM C2 C2 C 0 1 N N R N N N 221.658 233.272 104.661 -2.184 1.247 1.157 C2 A1CIM 2 A1CIM C3 C3 C 0 1 N N N N N N 221.086 234.245 103.621 -3.460 1.188 0.315 C3 A1CIM 3 A1CIM C4 C4 C 0 1 N N S N N N 221.859 235.572 103.552 -3.943 -0.260 0.222 C4 A1CIM 4 A1CIM C5 C5 C 0 1 N N R N N N 221.782 236.248 102.181 -5.287 -0.304 -0.508 C5 A1CIM 5 A1CIM C6 C6 C 0 1 N N N N N N 221.374 235.297 101.061 -5.771 -1.752 -0.601 C6 A1CIM 6 A1CIM C7 C7 C 0 1 N N N N N N 222.852 232.440 104.151 -1.096 0.457 0.476 C7 A1CIM 7 A1CIM C8 C8 C 0 1 N N S N N N 224.678 232.087 102.397 0.379 0.046 -1.419 C8 A1CIM 8 A1CIM C9 C9 C 0 1 N N N N N N 225.441 232.956 101.395 -0.131 -1.392 -1.539 C9 A1CIM 9 A1CIM C10 C10 C 0 1 N N S N N N 224.224 230.764 101.760 1.693 0.057 -0.635 C10 A1CIM 10 A1CIM C11 C11 C 0 1 N N S N N N 223.686 228.450 102.483 3.586 -1.306 -0.078 C11 A1CIM 11 A1CIM C12 C12 C 0 1 N N N N N N 222.283 228.612 101.905 4.562 -0.241 -0.584 C12 A1CIM 12 A1CIM C13 C13 C 0 1 N N S N N N 222.121 229.642 100.874 3.929 1.143 -0.414 C13 A1CIM 13 A1CIM C14 C14 C 0 1 N N S N N N 222.846 230.898 101.104 2.593 1.176 -1.163 C14 A1CIM 14 A1CIM C15 C15 C 0 1 N N N N N N 222.995 231.569 99.743 1.924 2.509 -0.941 C15 A1CIM 15 A1CIM C16 C16 C 0 1 N N N N N N 224.591 227.695 101.524 3.331 -1.097 1.393 C16 A1CIM 16 A1CIM N1 N1 N 0 1 N N N N N N 223.539 232.838 102.917 -0.616 0.860 -0.717 N1 A1CIM 17 A1CIM N2 N2 N 0 1 N N N N N N 224.112 231.227 98.889 2.102 3.508 -1.827 N2 A1CIM 18 A1CIM O1 O1 O 0 1 N N N N N N 220.643 232.392 105.053 -2.439 0.692 2.448 O1 A1CIM 19 A1CIM O10 O2 O 0 1 N N N N N N 224.882 228.130 100.381 2.200 -0.969 1.798 O10 A1CIM 20 A1CIM O11 O3 O 0 1 N N N N N N 225.080 226.590 101.884 4.361 -1.052 2.253 O11 A1CIM 21 A1CIM O2 O4 O 0 1 N N N N N N 221.301 236.451 104.486 -2.985 -1.037 -0.500 O2 A1CIM 22 A1CIM O3 O5 O 0 1 N N N N N N 220.825 237.267 102.257 -6.246 0.473 0.213 O3 A1CIM 23 A1CIM O4 O6 O 0 1 N N N N N N 221.449 235.991 99.847 -6.966 -1.806 -1.383 O4 A1CIM 24 A1CIM O5 O7 O 0 1 N N N N N N 223.209 231.486 104.758 -0.653 -0.542 1.002 O5 A1CIM 25 A1CIM O6 O8 O 0 1 N N N N N N 225.552 231.815 103.451 0.599 0.584 -2.725 O6 A1CIM 26 A1CIM O7 O9 O 0 1 N N N N N N 224.282 229.744 102.811 2.354 -1.200 -0.794 O7 A1CIM 27 A1CIM O8 O10 O 0 1 N N N N N N 222.468 229.092 99.629 3.707 1.401 0.974 O8 A1CIM 28 A1CIM O9 O11 O 0 1 N N N N N N 222.196 232.366 99.382 1.226 2.681 0.036 O9 A1CIM 29 A1CIM H11 H1 H 0 1 N N N N N N 219.350 230.935 104.421 -3.836 2.111 2.997 H11 A1CIM 30 A1CIM H12 H2 H 0 1 N N N N N N 219.718 232.231 103.233 -3.188 1.119 4.326 H12 A1CIM 31 A1CIM H13 H3 H 0 1 N N N N N N 220.949 230.977 103.605 -2.183 2.392 3.593 H13 A1CIM 32 A1CIM H21 H4 H 0 1 N N N N N N 221.999 233.859 105.526 -1.867 2.284 1.264 H21 A1CIM 33 A1CIM H31 H5 H 0 1 N N N N N N 220.040 234.462 103.882 -4.232 1.799 0.782 H31 A1CIM 34 A1CIM H32 H6 H 0 1 N N N N N N 221.125 233.764 102.632 -3.253 1.567 -0.686 H32 A1CIM 35 A1CIM H41 H7 H 0 1 N N N N N N 222.915 235.376 103.790 -4.061 -0.669 1.225 H41 A1CIM 36 A1CIM H51 H8 H 0 1 N N N N N N 222.770 236.668 101.942 -5.169 0.105 -1.512 H51 A1CIM 37 A1CIM H61 H9 H 0 1 N N N N N N 222.056 234.434 101.039 -5.000 -2.363 -1.073 H61 A1CIM 38 A1CIM H62 H10 H 0 1 N N N N N N 220.344 234.947 101.227 -5.974 -2.133 0.400 H62 A1CIM 39 A1CIM H91 H11 H 0 1 N N N N N N 226.300 232.394 101.001 -1.067 -1.400 -2.098 H91 A1CIM 40 A1CIM H92 H12 H 0 1 N N N N N N 224.773 233.233 100.566 0.609 -1.998 -2.062 H92 A1CIM 41 A1CIM H93 H13 H 0 1 N N N N N N 225.799 233.867 101.897 -0.299 -1.802 -0.543 H93 A1CIM 42 A1CIM H101 H14 H 0 0 N N N N N N 224.948 230.503 100.974 1.484 0.227 0.421 H101 A1CIM 43 A1CIM O12 H15 O 0 1 N Y N N N N 223.589 227.883 103.385 4.147 -2.604 -0.284 O12 A1CIM 44 A1CIM H121 H16 H 0 0 N N N N N N 221.605 228.859 102.735 5.487 -0.292 -0.008 H121 A1CIM 45 A1CIM H122 H17 H 0 0 N N N N N N 221.988 227.648 101.465 4.779 -0.417 -1.637 H122 A1CIM 46 A1CIM H131 H18 H 0 0 N N N N N N 221.051 229.894 100.840 4.596 1.902 -0.824 H131 A1CIM 47 A1CIM H141 H19 H 0 0 N N N N N N 222.230 231.551 101.740 2.769 1.030 -2.229 H141 A1CIM 48 A1CIM H14 H20 H 0 1 N N N N N N 223.219 233.644 102.419 -0.929 1.689 -1.111 H14 A1CIM 49 A1CIM H23 H21 H 0 1 N N N N N N 224.209 231.663 97.994 2.661 3.371 -2.608 H23 A1CIM 50 A1CIM H24 H22 H 0 1 N N N N N N 224.787 230.554 99.193 1.671 4.366 -1.684 H24 A1CIM 51 A1CIM H2 H23 H 0 1 N N N N N N 225.625 226.242 101.188 4.148 -0.916 3.186 H2 A1CIM 52 A1CIM H22 H24 H 0 1 N N N N N N 221.766 237.279 104.459 -2.829 -0.729 -1.403 H22 A1CIM 53 A1CIM H33 H25 H 0 1 N N N N N N 220.759 237.703 101.416 -6.402 0.165 1.116 H33 A1CIM 54 A1CIM H42 H26 H 0 1 N N N N N N 221.198 235.414 99.136 -7.329 -2.697 -1.485 H42 A1CIM 55 A1CIM H63 H27 H 0 1 N N N N N N 225.052 231.616 104.234 0.821 1.525 -2.730 H63 A1CIM 56 A1CIM H81 H28 H 0 1 N N N N N N 223.325 228.687 99.689 4.512 1.388 1.509 H81 A1CIM 57 A1CIM C17 C17 C 0 1 N Y N N N N ? ? ? 3.265 -3.678 0.050 C17 A1CIM 58 A1CIM H1 H1 H 0 1 N N N N N N ? ? ? 3.765 -4.629 -0.134 H1 A1CIM 59 A1CIM H3 H3 H 0 1 N N N N N N ? ? ? 2.992 -3.609 1.103 H3 A1CIM 60 A1CIM H4 H4 H 0 1 N N N N N N ? ? ? 2.366 -3.615 -0.563 H4 A1CIM 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CIM O1 C1 SING N N 1 A1CIM C2 O1 SING N N 2 A1CIM C4 C3 SING N N 3 A1CIM O2 C4 SING N N 4 A1CIM C5 C4 SING N N 5 A1CIM O3 C5 SING N N 6 A1CIM C6 C5 SING N N 7 A1CIM O4 C6 SING N N 8 A1CIM C3 C2 SING N N 9 A1CIM C7 C2 SING N N 10 A1CIM O5 C7 DOUB N N 11 A1CIM N1 C7 SING N N 12 A1CIM C8 N1 SING N N 13 A1CIM C9 C8 SING N N 14 A1CIM O6 C8 SING N N 15 A1CIM C10 C8 SING N N 16 A1CIM O7 C10 SING N N 17 A1CIM C11 O7 SING N N 18 A1CIM C13 C12 SING N N 19 A1CIM O8 C13 SING N N 20 A1CIM C14 C13 SING N N 21 A1CIM C15 C14 SING N N 22 A1CIM N2 C15 SING N N 23 A1CIM O9 C15 DOUB N N 24 A1CIM C12 C11 SING N N 25 A1CIM C16 C11 SING N N 26 A1CIM O11 C16 SING N N 27 A1CIM O10 C16 DOUB N N 28 A1CIM C10 C14 SING N N 29 A1CIM C1 H11 SING N N 30 A1CIM C1 H12 SING N N 31 A1CIM C1 H13 SING N N 32 A1CIM C2 H21 SING N N 33 A1CIM C3 H31 SING N N 34 A1CIM C3 H32 SING N N 35 A1CIM C4 H41 SING N N 36 A1CIM C5 H51 SING N N 37 A1CIM C6 H61 SING N N 38 A1CIM C6 H62 SING N N 39 A1CIM C9 H91 SING N N 40 A1CIM C9 H92 SING N N 41 A1CIM C9 H93 SING N N 42 A1CIM C10 H101 SING N N 43 A1CIM C11 O12 SING N N 44 A1CIM C12 H121 SING N N 45 A1CIM C12 H122 SING N N 46 A1CIM C13 H131 SING N N 47 A1CIM C14 H141 SING N N 48 A1CIM N1 H14 SING N N 49 A1CIM N2 H23 SING N N 50 A1CIM N2 H24 SING N N 51 A1CIM O11 H2 SING N N 52 A1CIM O2 H22 SING N N 53 A1CIM O3 H33 SING N N 54 A1CIM O4 H42 SING N N 55 A1CIM O6 H63 SING N N 56 A1CIM O8 H81 SING N N 57 A1CIM O12 C17 SING N N 58 A1CIM C17 H1 SING N N 59 A1CIM C17 H3 SING N N 60 A1CIM C17 H4 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CIM SMILES ACDLabs 14.52 "COC1(CC(O)C(C(O1)C(C)(O)NC(=O)C(CC(O)C(O)CO)OC)C(N)=O)C(=O)O" A1CIM InChI InChI 1.06 "InChI=1S/C17H30N2O12/c1-16(28,19-14(25)10(29-2)4-7(21)9(23)6-20)12-11(13(18)24)8(22)5-17(30-3,31-12)15(26)27/h7-12,20-23,28H,4-6H2,1-3H3,(H2,18,24)(H,19,25)(H,26,27)/t7-,8-,9+,10+,11-,12-,16-,17-/m0/s1" A1CIM InChIKey InChI 1.06 NLOSFORGRBCEDF-JGMMATJMSA-N A1CIM SMILES_CANONICAL CACTVS 3.385 "CO[C@H](C[C@H](O)[C@H](O)CO)C(=O)N[C@@](C)(O)[C@H]1O[C@](C[C@H](O)[C@@H]1C(N)=O)(OC)C(O)=O" A1CIM SMILES CACTVS 3.385 "CO[CH](C[CH](O)[CH](O)CO)C(=O)N[C](C)(O)[CH]1O[C](C[CH](O)[CH]1C(N)=O)(OC)C(O)=O" A1CIM SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@]([C@@H]1[C@H]([C@H](C[C@](O1)(C(=O)O)OC)O)C(=O)N)(NC(=O)[C@@H](C[C@@H]([C@@H](CO)O)O)OC)O" A1CIM SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C1C(C(CC(O1)(C(=O)O)OC)O)C(=O)N)(NC(=O)C(CC(C(CO)O)O)OC)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CIM "SYSTEMATIC NAME" ACDLabs 14.52 "(2S,4S,5S,6S)-5-carbamoyl-4-hydroxy-6-{(1S)-1-hydroxy-1-[(2R,4S,5R)-4,5,6-trihydroxy-2-methoxyhexanamido]ethyl}-2-methoxyoxane-2-carboxylic acid (non-preferred name)" A1CIM "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S},4~{S},5~{S},6~{S})-5-aminocarbonyl-2-methoxy-6-[(1~{S})-1-[[(2~{R},4~{S},5~{R})-2-methoxy-4,5,6-tris(oxidanyl)hexanoyl]amino]-1-oxidanyl-ethyl]-4-oxidanyl-oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CIM "Create component" 2025-07-15 RCSB A1CIM "Modify PCM" 2025-07-15 RCSB A1CIM "Initial release" 2026-07-22 RCSB # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 A1CIM SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" C11 OG ? ? 2 A1CIM THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" C11 OG1 ? ? #