data_A1CLL # _chem_comp.id A1CLL _chem_comp.name "(7M)-8-methyl-1'-{[5-(4-methylpiperazin-1-yl)pyridin-2-yl]methyl}-7-(2-methylpyridin-4-yl)-3,4-dihydrospiro[[1]benzopyran-2,4'-piperidine]" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H39 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-04 _chem_comp.pdbx_modified_date 2026-01-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 497.674 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CLL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9PVK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CLL C10 C1 C 0 1 N N N N N N 4.157 42.468 -16.835 1.467 2.923 0.367 C10 A1CLL 1 A1CLL C15 C2 C 0 1 Y N N N N N 3.419 38.572 -19.870 -2.998 1.102 -1.483 C15 A1CLL 2 A1CLL C17 C3 C 0 1 Y N N N N N 3.324 37.687 -22.121 -5.294 1.262 -0.848 C17 A1CLL 3 A1CLL C20 C4 C 0 1 N N N N N N 1.362 36.794 -24.257 -5.927 -1.956 0.820 C20 A1CLL 4 A1CLL C21 C5 C 0 1 N N N N N N 0.209 36.623 -25.261 -7.127 -2.551 1.560 C21 A1CLL 5 A1CLL C24 C6 C 0 1 N N N N N N -0.508 38.817 -25.016 -8.628 -1.281 0.148 C24 A1CLL 6 A1CLL C26 C7 C 0 1 Y N N N N N 1.358 38.654 -21.033 -3.962 -0.677 -0.382 C26 A1CLL 7 A1CLL C28 C8 C 0 1 N N N N N N 3.734 41.042 -18.901 0.123 3.146 -1.725 C28 A1CLL 8 A1CLL C01 C9 C 0 1 N N N N N N 12.252 44.901 -19.182 8.986 -3.061 -0.237 C01 A1CLL 9 A1CLL C02 C10 C 0 1 Y N N N N N 10.932 45.214 -19.925 7.502 -2.879 -0.425 C02 A1CLL 10 A1CLL C03 C11 C 0 1 Y N N N N N 9.735 45.261 -19.205 6.863 -1.821 0.189 C03 A1CLL 11 A1CLL C04 C12 C 0 1 Y N N N N N 8.532 45.555 -19.861 5.486 -1.663 0.006 C04 A1CLL 12 A1CLL C05 C13 C 0 1 Y N N N N N 7.190 45.554 -19.082 4.757 -0.541 0.646 C05 A1CLL 13 A1CLL C06 C14 C 0 1 Y N N N N N 6.776 44.296 -18.616 3.912 0.265 -0.109 C06 A1CLL 14 A1CLL C07 C15 C 0 1 N N N N N N 7.514 42.949 -18.797 3.736 -0.003 -1.582 C07 A1CLL 15 A1CLL C08 C16 C 0 1 Y N N N N N 5.572 44.199 -17.912 3.229 1.316 0.491 C08 A1CLL 16 A1CLL C11 C17 C 0 1 N N N N N N 3.572 41.515 -15.950 0.345 2.066 0.955 C11 A1CLL 17 A1CLL C12 C18 C 0 1 N N N N N N 4.280 40.293 -16.644 -0.395 1.352 -0.179 C12 A1CLL 18 A1CLL C14 C19 C 0 1 N N N N N N 4.151 38.926 -18.512 -1.780 1.705 -2.134 C14 A1CLL 19 A1CLL C16 C20 C 0 1 Y N N N N N 4.078 37.962 -20.941 -4.178 1.822 -1.447 C16 A1CLL 20 A1CLL C18 C21 C 0 1 Y N N N N N 1.956 38.041 -22.126 -5.181 -0.014 -0.301 C18 A1CLL 21 A1CLL C23 C22 C 0 1 N N N N N N -1.045 37.660 -26.816 -9.430 -3.254 1.301 C23 A1CLL 22 A1CLL C25 C23 C 0 1 N N N N N N 0.555 39.047 -23.925 -7.428 -0.686 -0.592 C25 A1CLL 23 A1CLL C29 C24 C 0 1 N N N N N N 3.522 42.358 -18.183 0.877 3.915 -0.637 C29 A1CLL 24 A1CLL C30 C25 C 0 1 N N N N N N 3.504 43.640 -16.014 2.168 3.691 1.492 C30 A1CLL 25 A1CLL C31 C26 C 0 1 N N N N N N 3.472 44.945 -16.811 2.658 2.683 2.533 C31 A1CLL 26 A1CLL C32 C27 C 0 1 Y N N N N N 4.748 45.208 -17.617 3.388 1.556 1.845 C32 A1CLL 27 A1CLL C33 C28 C 0 1 Y N N N N N 5.129 46.531 -18.078 4.232 0.754 2.598 C33 A1CLL 28 A1CLL C34 C29 C 0 1 Y N N N N N 6.350 46.661 -18.812 4.915 -0.289 2.009 C34 A1CLL 29 A1CLL C35 C30 C 0 1 Y N N N N N 8.582 45.765 -21.243 4.815 -2.590 -0.796 C35 A1CLL 30 A1CLL C36 C31 C 0 1 Y N N N N N 9.819 45.711 -21.897 5.532 -3.619 -1.373 C36 A1CLL 31 A1CLL N13 N1 N 0 1 N N N N N N 3.667 39.926 -17.962 -0.945 2.347 -1.109 N13 A1CLL 32 A1CLL N19 N2 N 0 1 N N N N N N 1.058 37.829 -23.286 -6.277 -0.619 0.319 N19 A1CLL 33 A1CLL N22 N3 N 0 1 N N N N N N -0.143 37.816 -25.893 -8.278 -2.618 0.649 N22 A1CLL 34 A1CLL N27 N4 N 0 1 Y N N N N N 2.121 38.882 -19.968 -2.925 -0.106 -0.961 N27 A1CLL 35 A1CLL N37 N5 N 0 1 Y N N N N N 10.941 45.447 -21.239 6.832 -3.730 -1.179 N37 A1CLL 36 A1CLL O09 O1 O 0 1 N N N N N N 5.346 42.837 -17.549 2.424 2.089 -0.284 O09 A1CLL 37 A1CLL H171 H1 H 0 0 N N N N N N 3.784 37.224 -22.982 -6.229 1.801 -0.805 H171 A1CLL 38 A1CLL H201 H2 H 0 0 N N N N N N 2.276 37.070 -24.803 -5.081 -1.879 1.502 H201 A1CLL 39 A1CLL H202 H3 H 0 0 N N N N N N 1.524 35.842 -23.729 -5.661 -2.600 -0.018 H202 A1CLL 40 A1CLL H211 H4 H 0 0 N N N N N N 0.517 35.897 -26.028 -6.880 -3.554 1.907 H211 A1CLL 41 A1CLL H212 H5 H 0 0 N N N N N N -0.670 36.238 -24.723 -7.376 -1.922 2.415 H212 A1CLL 42 A1CLL H241 H6 H 0 0 N N N N N N -0.645 39.751 -25.581 -8.894 -0.637 0.986 H241 A1CLL 43 A1CLL H242 H7 H 0 0 N N N N N N -1.457 38.538 -24.534 -9.474 -1.358 -0.534 H242 A1CLL 44 A1CLL H261 H8 H 0 0 N N N N N N 0.315 38.934 -21.047 -3.863 -1.666 0.039 H261 A1CLL 45 A1CLL H281 H9 H 0 0 N N N N N N 4.722 41.049 -19.384 -0.313 3.851 -2.432 H281 A1CLL 46 A1CLL H282 H10 H 0 0 N N N N N N 2.953 40.918 -19.666 0.814 2.486 -2.249 H282 A1CLL 47 A1CLL H011 H11 H 0 0 N N N N N N 13.088 44.914 -19.897 9.521 -2.515 -1.014 H011 A1CLL 48 A1CLL H012 H12 H 0 0 N N N N N N 12.423 45.659 -18.404 9.278 -2.679 0.741 H012 A1CLL 49 A1CLL H013 H13 H 0 0 N N N N N N 12.184 43.907 -18.716 9.233 -4.121 -0.302 H013 A1CLL 50 A1CLL H031 H14 H 0 0 N N N N N N 9.737 45.071 -18.142 7.418 -1.127 0.802 H031 A1CLL 51 A1CLL H071 H15 H 0 0 N N N N N N 8.198 42.789 -17.951 2.908 -0.696 -1.729 H071 A1CLL 52 A1CLL H072 H16 H 0 0 N N N N N N 6.780 42.131 -18.835 3.522 0.933 -2.098 H072 A1CLL 53 A1CLL H073 H17 H 0 0 N N N N N N 8.089 42.969 -19.734 4.651 -0.438 -1.984 H073 A1CLL 54 A1CLL H111 H18 H 0 0 N N N N N N 2.475 41.477 -16.015 0.770 1.327 1.634 H111 A1CLL 55 A1CLL H112 H19 H 0 0 N N N N N N 3.872 41.654 -14.901 -0.352 2.703 1.500 H112 A1CLL 56 A1CLL H121 H20 H 0 0 N N N N N N 5.337 40.549 -16.809 0.298 0.701 -0.712 H121 A1CLL 57 A1CLL H122 H21 H 0 0 N N N N N N 4.214 39.424 -15.973 -1.207 0.755 0.236 H122 A1CLL 58 A1CLL H141 H22 H 0 0 N N N N N N 4.062 38.069 -17.828 -1.207 0.922 -2.630 H141 A1CLL 59 A1CLL H142 H23 H 0 0 N N N N N N 5.213 39.118 -18.723 -2.090 2.449 -2.867 H142 A1CLL 60 A1CLL H161 H24 H 0 0 N N N N N N 5.125 37.707 -20.878 -4.229 2.809 -1.881 H161 A1CLL 61 A1CLL H231 H25 H 0 0 N N N N N N -1.276 38.634 -27.272 -10.245 -3.352 0.584 H231 A1CLL 62 A1CLL H232 H26 H 0 0 N N N N N N -0.665 36.975 -27.588 -9.144 -4.242 1.662 H232 A1CLL 63 A1CLL H233 H27 H 0 0 N N N N N N -1.958 37.239 -26.369 -9.757 -2.641 2.141 H233 A1CLL 64 A1CLL H251 H28 H 0 0 N N N N N N 1.408 39.569 -24.384 -7.179 -1.316 -1.446 H251 A1CLL 65 A1CLL H252 H29 H 0 0 N N N N N N 0.112 39.684 -23.145 -7.675 0.317 -0.940 H252 A1CLL 66 A1CLL H291 H30 H 0 0 N N N N N N 3.932 43.159 -18.816 0.189 4.587 -0.124 H291 A1CLL 67 A1CLL H292 H31 H 0 0 N N N N N N 2.439 42.506 -18.060 1.681 4.494 -1.092 H292 A1CLL 68 A1CLL H301 H32 H 0 0 N N N N N N 2.474 43.359 -15.750 3.017 4.242 1.086 H301 A1CLL 69 A1CLL H302 H33 H 0 0 N N N N N N 4.087 43.799 -15.095 1.467 4.386 1.954 H302 A1CLL 70 A1CLL H311 H34 H 0 0 N N N N N N 2.623 44.904 -17.509 3.333 3.180 3.230 H311 A1CLL 71 A1CLL H312 H35 H 0 0 N N N N N N 3.328 45.778 -16.107 1.805 2.282 3.079 H312 A1CLL 72 A1CLL H331 H36 H 0 0 N N N N N N 4.509 47.391 -17.873 4.355 0.947 3.653 H331 A1CLL 73 A1CLL H341 H37 H 0 0 N N N N N N 6.641 47.637 -19.172 5.571 -0.909 2.601 H341 A1CLL 74 A1CLL H351 H38 H 0 0 N N N N N N 7.678 45.966 -21.799 3.752 -2.503 -0.961 H351 A1CLL 75 A1CLL H361 H39 H 0 0 N N N N N N 9.861 45.888 -22.962 5.023 -4.340 -1.994 H361 A1CLL 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CLL C02 C01 SING N N 1 A1CLL C03 C02 DOUB Y N 2 A1CLL C04 C03 SING Y N 3 A1CLL C06 C05 DOUB Y N 4 A1CLL C07 C06 SING N N 5 A1CLL C08 C06 SING Y N 6 A1CLL C10 O09 SING N N 7 A1CLL C12 C11 SING N N 8 A1CLL N13 C12 SING N N 9 A1CLL C15 C14 SING N N 10 A1CLL C16 C15 DOUB Y N 11 A1CLL C17 C16 SING Y N 12 A1CLL C18 C17 DOUB Y N 13 A1CLL C20 N19 SING N N 14 A1CLL C21 C20 SING N N 15 A1CLL N22 C21 SING N N 16 A1CLL C23 N22 SING N N 17 A1CLL C24 N22 SING N N 18 A1CLL C25 C24 SING N N 19 A1CLL N19 C18 SING N N 20 A1CLL C26 C18 SING Y N 21 A1CLL N27 C26 DOUB Y N 22 A1CLL C14 N13 SING N N 23 A1CLL C28 N13 SING N N 24 A1CLL C29 C28 SING N N 25 A1CLL C11 C10 SING N N 26 A1CLL C30 C10 SING N N 27 A1CLL C31 C30 SING N N 28 A1CLL O09 C08 SING N N 29 A1CLL C32 C08 DOUB Y N 30 A1CLL C33 C32 SING Y N 31 A1CLL C34 C33 DOUB Y N 32 A1CLL C05 C04 SING N N 33 A1CLL C35 C04 DOUB Y N 34 A1CLL C36 C35 SING Y N 35 A1CLL N37 C36 DOUB Y N 36 A1CLL C02 N37 SING Y N 37 A1CLL C05 C34 SING Y N 38 A1CLL C10 C29 SING N N 39 A1CLL C15 N27 SING Y N 40 A1CLL N19 C25 SING N N 41 A1CLL C31 C32 SING N N 42 A1CLL C17 H171 SING N N 43 A1CLL C20 H201 SING N N 44 A1CLL C20 H202 SING N N 45 A1CLL C21 H211 SING N N 46 A1CLL C21 H212 SING N N 47 A1CLL C24 H241 SING N N 48 A1CLL C24 H242 SING N N 49 A1CLL C26 H261 SING N N 50 A1CLL C28 H281 SING N N 51 A1CLL C28 H282 SING N N 52 A1CLL C01 H011 SING N N 53 A1CLL C01 H012 SING N N 54 A1CLL C01 H013 SING N N 55 A1CLL C03 H031 SING N N 56 A1CLL C07 H071 SING N N 57 A1CLL C07 H072 SING N N 58 A1CLL C07 H073 SING N N 59 A1CLL C11 H111 SING N N 60 A1CLL C11 H112 SING N N 61 A1CLL C12 H121 SING N N 62 A1CLL C12 H122 SING N N 63 A1CLL C14 H141 SING N N 64 A1CLL C14 H142 SING N N 65 A1CLL C16 H161 SING N N 66 A1CLL C23 H231 SING N N 67 A1CLL C23 H232 SING N N 68 A1CLL C23 H233 SING N N 69 A1CLL C25 H251 SING N N 70 A1CLL C25 H252 SING N N 71 A1CLL C29 H291 SING N N 72 A1CLL C29 H292 SING N N 73 A1CLL C30 H301 SING N N 74 A1CLL C30 H302 SING N N 75 A1CLL C31 H311 SING N N 76 A1CLL C31 H312 SING N N 77 A1CLL C33 H331 SING N N 78 A1CLL C34 H341 SING N N 79 A1CLL C35 H351 SING N N 80 A1CLL C36 H361 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CLL SMILES ACDLabs 14.52 "CN1CCN(CC1)c1ccc(nc1)CN1CCC2(CC1)CCc1ccc(c3ccnc(C)c3)c(C)c1O2" A1CLL InChI InChI 1.06 "InChI=1S/C31H39N5O/c1-23-20-26(9-13-32-23)29-7-4-25-8-10-31(37-30(25)24(29)2)11-14-35(15-12-31)22-27-5-6-28(21-33-27)36-18-16-34(3)17-19-36/h4-7,9,13,20-21H,8,10-12,14-19,22H2,1-3H3" A1CLL InChIKey InChI 1.06 ZTGXWRPQUDBLTI-UHFFFAOYSA-N A1CLL SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)c2ccc(CN3CCC4(CC3)CCc5ccc(c(C)c5O4)c6ccnc(C)c6)nc2" A1CLL SMILES CACTVS 3.385 "CN1CCN(CC1)c2ccc(CN3CCC4(CC3)CCc5ccc(c(C)c5O4)c6ccnc(C)c6)nc2" A1CLL SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1cc(ccn1)c2ccc3c(c2C)OC4(CC3)CCN(CC4)Cc5ccc(cn5)N6CCN(CC6)C" A1CLL SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1cc(ccn1)c2ccc3c(c2C)OC4(CC3)CCN(CC4)Cc5ccc(cn5)N6CCN(CC6)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CLL "SYSTEMATIC NAME" ACDLabs 14.52 "(7M)-8-methyl-1'-{[5-(4-methylpiperazin-1-yl)pyridin-2-yl]methyl}-7-(2-methylpyridin-4-yl)-3,4-dihydrospiro[[1]benzopyran-2,4'-piperidine]" A1CLL "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "8-methyl-1'-[[5-(4-methylpiperazin-1-yl)pyridin-2-yl]methyl]-7-(2-methylpyridin-4-yl)spiro[3,4-dihydrochromene-2,4'-piperidine]" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CLL "Create component" 2025-08-04 RCSB A1CLL "Initial release" 2026-01-21 RCSB #