data_A1CLT # _chem_comp.id A1CLT _chem_comp.name "(1R,2S)-2-(1-methyl-1H-1,3-benzimidazol-6-yl)cyclopentane-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H16 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-05 _chem_comp.pdbx_modified_date 2025-08-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.289 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CLT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7IJP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CLT N1 N1 N 0 1 Y N N N N N -2.123 15.314 2.276 3.363 -0.857 -1.196 N1 A1CLT 1 A1CLT C4 C1 C 0 1 Y N N N N N 0.365 15.068 -0.502 -0.306 -0.293 -1.261 C4 A1CLT 2 A1CLT C5 C2 C 0 1 Y N N N N N -0.540 14.943 -1.557 -0.345 0.582 -0.185 C5 A1CLT 3 A1CLT C6 C3 C 0 1 N N S N N N -0.069 14.847 -2.998 -1.662 1.161 0.262 C6 A1CLT 4 A1CLT C7 C4 C 0 1 N N N N N N 0.997 15.895 -3.382 -2.442 1.700 -0.954 C7 A1CLT 5 A1CLT C8 C5 C 0 1 N N N N N N 1.739 15.284 -4.544 -3.920 1.361 -0.638 C8 A1CLT 6 A1CLT C10 C6 C 0 1 N N R N N N 0.540 13.482 -3.451 -2.535 0.062 0.892 C10 A1CLT 7 A1CLT C13 C7 C 0 1 Y N N N N N -2.330 15.073 0.018 2.026 0.387 0.067 C13 A1CLT 8 A1CLT O O1 O 0 1 N N N N N N -0.039 11.496 -2.264 -2.015 -2.048 -0.019 O A1CLT 9 A1CLT C11 C8 C 0 1 N N N N N N 0.684 12.455 -2.350 -1.803 -1.256 0.868 C11 A1CLT 10 A1CLT O1 O2 O 0 1 N N N N N N 1.694 12.665 -1.573 -0.916 -1.549 1.832 O1 A1CLT 11 A1CLT C9 C9 C 0 1 N N N N N N 1.892 13.845 -4.108 -3.815 -0.029 0.037 C9 A1CLT 12 A1CLT C3 C10 C 0 1 Y N N N N N -0.063 15.205 0.809 0.877 -0.831 -1.681 C3 A1CLT 13 A1CLT C12 C11 C 0 1 Y N N N N N -1.908 14.941 -1.296 0.815 0.923 0.479 C12 A1CLT 14 A1CLT N N2 N 0 1 Y N N N N N -3.582 15.088 0.593 3.332 0.516 0.498 N A1CLT 15 A1CLT C C12 C 0 1 N N N N N N -4.846 14.936 -0.113 3.799 1.341 1.616 C A1CLT 16 A1CLT C2 C13 C 0 1 Y N N N N N -1.431 15.209 1.072 2.064 -0.499 -1.023 C2 A1CLT 17 A1CLT C1 C14 C 0 1 Y N N N N N -3.382 15.237 1.928 4.103 -0.263 -0.307 C1 A1CLT 18 A1CLT H7 H1 H 0 1 N N N N N N 1.424 15.058 -0.712 -1.222 -0.552 -1.772 H7 A1CLT 19 A1CLT H H2 H 0 1 N N N N N N -0.944 15.031 -3.639 -1.492 1.962 0.982 H A1CLT 20 A1CLT H8 H3 H 0 1 N N N N N N 0.521 16.840 -3.681 -2.309 2.778 -1.046 H8 A1CLT 21 A1CLT H9 H4 H 0 1 N N N N N N 1.680 16.079 -2.540 -2.122 1.197 -1.867 H9 A1CLT 22 A1CLT H10 H5 H 0 1 N N N N N N 1.155 15.359 -5.473 -4.346 2.093 0.048 H10 A1CLT 23 A1CLT H11 H6 H 0 1 N N N N N N 2.719 15.763 -4.687 -4.508 1.302 -1.555 H11 A1CLT 24 A1CLT H1 H7 H 0 1 N N N N N N -0.114 13.065 -4.231 -2.789 0.329 1.918 H1 A1CLT 25 A1CLT H14 H8 H 0 1 N N N N N N 1.764 11.956 -0.945 -0.472 -2.405 1.774 H14 A1CLT 26 A1CLT H12 H9 H 0 1 N N N N N N 2.087 13.197 -4.975 -4.684 -0.213 0.669 H12 A1CLT 27 A1CLT H13 H10 H 0 1 N N N N N N 2.713 13.746 -3.383 -3.717 -0.812 -0.715 H13 A1CLT 28 A1CLT H6 H11 H 0 1 N N N N N N 0.651 15.307 1.613 0.895 -1.511 -2.519 H6 A1CLT 29 A1CLT H15 H12 H 0 1 N N N N N N -2.623 14.839 -2.099 0.780 1.605 1.316 H15 A1CLT 30 A1CLT H2 H13 H 0 1 N N N N N N -4.655 14.838 -1.192 4.048 2.338 1.252 H2 A1CLT 31 A1CLT H3 H14 H 0 1 N N N N N N -5.363 14.036 0.251 3.013 1.413 2.368 H3 A1CLT 32 A1CLT H4 H15 H 0 1 N N N N N N -5.476 15.819 0.069 4.685 0.885 2.058 H4 A1CLT 33 A1CLT H5 H16 H 0 1 N N N N N N -4.192 15.288 2.641 5.174 -0.373 -0.219 H5 A1CLT 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CLT C N SING N N 1 A1CLT N C1 SING Y N 2 A1CLT C1 N1 DOUB Y N 3 A1CLT N1 C2 SING Y N 4 A1CLT C2 C3 DOUB Y N 5 A1CLT C3 C4 SING Y N 6 A1CLT C4 C5 DOUB Y N 7 A1CLT C5 C6 SING N N 8 A1CLT C6 C7 SING N N 9 A1CLT C7 C8 SING N N 10 A1CLT C8 C9 SING N N 11 A1CLT C9 C10 SING N N 12 A1CLT C6 C10 SING N N 13 A1CLT C10 C11 SING N N 14 A1CLT C11 O DOUB N N 15 A1CLT O1 C11 SING N N 16 A1CLT C12 C5 SING Y N 17 A1CLT C13 C12 DOUB Y N 18 A1CLT C2 C13 SING Y N 19 A1CLT N C13 SING Y N 20 A1CLT C4 H7 SING N N 21 A1CLT C6 H SING N N 22 A1CLT C7 H8 SING N N 23 A1CLT C7 H9 SING N N 24 A1CLT C8 H10 SING N N 25 A1CLT C8 H11 SING N N 26 A1CLT C10 H1 SING N N 27 A1CLT O1 H14 SING N N 28 A1CLT C9 H12 SING N N 29 A1CLT C9 H13 SING N N 30 A1CLT C3 H6 SING N N 31 A1CLT C12 H15 SING N N 32 A1CLT C H2 SING N N 33 A1CLT C H3 SING N N 34 A1CLT C H4 SING N N 35 A1CLT C1 H5 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CLT SMILES ACDLabs 14.52 "O=C(O)C1CCCC1c1ccc2ncn(C)c2c1" A1CLT InChI InChI 1.06 "InChI=1S/C14H16N2O2/c1-16-8-15-12-6-5-9(7-13(12)16)10-3-2-4-11(10)14(17)18/h5-8,10-11H,2-4H2,1H3,(H,17,18)/t10-,11-/m1/s1" A1CLT InChIKey InChI 1.06 JKQNZNKKFBLZGL-GHMZBOCLSA-N A1CLT SMILES_CANONICAL CACTVS 3.385 "Cn1cnc2ccc(cc12)[C@H]3CCC[C@H]3C(O)=O" A1CLT SMILES CACTVS 3.385 "Cn1cnc2ccc(cc12)[CH]3CCC[CH]3C(O)=O" A1CLT SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cn1cnc2c1cc(cc2)[C@H]3CCC[C@H]3C(=O)O" A1CLT SMILES "OpenEye OEToolkits" 3.1.0.0 "Cn1cnc2c1cc(cc2)C3CCCC3C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CLT "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,2S)-2-(1-methyl-1H-1,3-benzimidazol-6-yl)cyclopentane-1-carboxylic acid" A1CLT "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},2~{S})-2-(3-methylbenzimidazol-5-yl)cyclopentane-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CLT "Create component" 2025-08-05 RCSB A1CLT "Initial release" 2025-08-13 RCSB #