data_A1CNP # _chem_comp.id A1CNP _chem_comp.name "(3S)-3-[5-(1-benzyl-4-hydroxypiperidin-4-yl)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-15 _chem_comp.pdbx_modified_date 2025-09-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 433.500 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CNP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Q22 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CNP N1 N1 N 0 1 N N N N N N -33.599 100.006 47.020 -6.569 -1.044 0.916 N1 A1CNP 1 A1CNP N3 N2 N 0 1 N N N N N N -34.294 94.238 56.086 4.485 -0.977 -0.450 N3 A1CNP 2 A1CNP C4 C1 C 0 1 Y N N N N N -34.170 93.226 49.465 -0.753 2.154 -0.438 C4 A1CNP 3 A1CNP C5 C2 C 0 1 Y N N N N N -34.146 92.835 50.793 0.428 1.460 -0.271 C5 A1CNP 4 A1CNP C6 C3 C 0 1 Y N N N N N -36.717 94.431 58.362 7.210 -0.193 1.140 C6 A1CNP 5 A1CNP C7 C4 C 0 1 Y N N N N N -35.222 96.286 58.517 7.443 0.133 -1.220 C7 A1CNP 6 A1CNP C8 C5 C 0 1 Y N N N N N -34.084 95.113 51.477 -0.800 -0.539 0.236 C8 A1CNP 7 A1CNP C10 C6 C 0 1 Y N N N N N -34.070 93.768 51.825 0.407 0.118 0.064 C10 A1CNP 8 A1CNP C13 C7 C 0 1 N N N N N N -34.269 95.281 47.841 -3.371 1.960 -0.366 C13 A1CNP 9 A1CNP C15 C8 C 0 1 N N N N N N -33.286 98.702 47.334 -6.241 0.250 1.046 C15 A1CNP 10 A1CNP C17 C9 C 0 1 N N N N N N -35.759 99.445 46.018 -5.868 -1.044 -1.466 C17 A1CNP 11 A1CNP C20 C10 C 0 1 N N N N N N -35.383 93.690 53.949 2.787 0.330 0.737 C20 A1CNP 12 A1CNP C21 C11 C 0 1 N N N N N N -33.009 93.778 55.558 3.482 -1.940 -0.923 C21 A1CNP 13 A1CNP C22 C12 C 0 1 N N N N N N -35.365 93.467 55.452 4.113 -0.423 0.858 C22 A1CNP 14 A1CNP C24 C13 C 0 1 N N N N N N -34.044 93.335 53.288 1.703 -0.632 0.243 C24 A1CNP 15 A1CNP C1 C14 C 0 1 Y N N N N N -37.501 96.523 59.227 8.745 1.444 0.303 C1 A1CNP 16 A1CNP C2 C15 C 0 1 Y N N N N N -37.736 95.208 58.891 8.158 0.787 1.369 C2 A1CNP 17 A1CNP C3 C16 C 0 1 Y N N N N N -36.244 97.062 59.042 8.391 1.113 -0.992 C3 A1CNP 18 A1CNP C9 C17 C 0 1 Y N N N N N -34.192 94.580 49.144 -1.973 1.501 -0.261 C9 A1CNP 19 A1CNP C11 C18 C 0 1 Y N N N N N -34.159 95.521 50.155 -1.982 0.147 0.083 C11 A1CNP 20 A1CNP C12 C19 C 0 1 Y N N N N N -35.448 94.962 58.163 6.853 -0.520 -0.154 C12 A1CNP 21 A1CNP C14 C20 C 0 1 N N N N N N -34.749 100.469 46.433 -6.425 -1.714 -0.238 C14 A1CNP 22 A1CNP C16 C21 C 0 1 N N N N N N -34.200 96.899 49.564 -3.432 -0.255 0.198 C16 A1CNP 23 A1CNP C18 C22 C 0 1 N N N N N N -35.765 98.236 46.945 -6.218 0.452 -1.422 C18 A1CNP 24 A1CNP C19 C23 C 0 1 N N N N N N -32.916 94.030 54.063 2.136 -1.232 -1.098 C19 A1CNP 25 A1CNP C23 C24 C 0 1 N N S N N N -34.353 97.645 47.099 -5.679 1.034 -0.111 C23 A1CNP 26 A1CNP C25 C25 C 0 1 N N N N N N -34.348 94.127 57.549 5.820 -1.588 -0.403 C25 A1CNP 27 A1CNP N2 N3 N 0 1 N N N N N N -34.258 96.615 48.125 -4.216 0.949 -0.102 N2 A1CNP 28 A1CNP O1 O1 O 0 1 N N N N N N -34.341 94.804 46.722 -3.711 3.092 -0.651 O1 A1CNP 29 A1CNP O2 O2 O 0 1 N N N N N N -34.937 101.672 46.303 -6.750 -2.881 -0.292 O2 A1CNP 30 A1CNP O3 O3 O 0 1 N N N N N N -32.161 98.402 47.729 -6.400 0.799 2.115 O3 A1CNP 31 A1CNP O4 O4 O 0 1 N N N N N N -33.848 91.925 53.417 1.521 -1.678 1.199 O4 A1CNP 32 A1CNP H26 H1 H 0 1 N N N N N N -32.909 100.694 47.246 -6.921 -1.516 1.687 H26 A1CNP 33 A1CNP H4 H3 H 0 1 N N N N N N -34.172 92.483 48.681 -0.732 3.202 -0.700 H4 A1CNP 34 A1CNP H5 H4 H 0 1 N N N N N N -34.187 91.783 51.034 1.373 1.966 -0.404 H5 A1CNP 35 A1CNP H6 H5 H 0 1 N N N N N N -36.911 93.401 58.101 6.753 -0.706 1.973 H6 A1CNP 36 A1CNP H7 H6 H 0 1 N N N N N N -34.240 96.715 58.382 7.167 -0.126 -2.232 H7 A1CNP 37 A1CNP H8 H7 H 0 1 N N N N N N -34.035 95.859 52.256 -0.813 -1.587 0.497 H8 A1CNP 38 A1CNP H11 H8 H 0 1 N N N N N N -36.757 99.906 46.031 -4.786 -1.172 -1.491 H11 A1CNP 39 A1CNP H12 H9 H 0 1 N N N N N N -35.524 99.108 44.998 -6.309 -1.492 -2.357 H12 A1CNP 40 A1CNP H18 H10 H 0 1 N N N N N N -35.604 94.749 53.752 2.503 0.728 1.711 H18 A1CNP 41 A1CNP H17 H11 H 0 1 N N N N N N -36.172 93.062 53.508 2.897 1.150 0.027 H17 A1CNP 42 A1CNP H19 H12 H 0 1 N N N N N N -32.907 92.699 55.749 3.800 -2.356 -1.879 H19 A1CNP 43 A1CNP H20 H13 H 0 1 N N N N N N -32.197 94.319 56.066 3.377 -2.743 -0.194 H20 A1CNP 44 A1CNP H21 H14 H 0 1 N N N N N N -36.331 93.781 55.873 4.006 -1.234 1.579 H21 A1CNP 45 A1CNP H22 H15 H 0 1 N N N N N N -35.206 92.398 55.655 4.890 0.263 1.196 H22 A1CNP 46 A1CNP H1 H16 H 0 1 N N N N N N -38.297 97.130 59.633 9.485 2.210 0.482 H1 A1CNP 47 A1CNP H2 H17 H 0 1 N N N N N N -38.717 94.781 59.040 8.441 1.040 2.380 H2 A1CNP 48 A1CNP H3 H18 H 0 1 N N N N N N -36.056 98.092 59.307 8.855 1.620 -1.825 H3 A1CNP 49 A1CNP H10 H19 H 0 1 N N N N N N -33.297 97.471 49.822 -3.661 -1.040 -0.523 H10 A1CNP 50 A1CNP H9 H20 H 0 1 N N N N N N -35.091 97.450 49.898 -3.646 -0.601 1.209 H9 A1CNP 51 A1CNP H13 H21 H 0 1 N N N N N N -36.135 98.544 47.934 -5.749 0.963 -2.263 H13 A1CNP 52 A1CNP H14 H22 H 0 1 N N N N N N -36.432 97.467 46.528 -7.299 0.577 -1.471 H14 A1CNP 53 A1CNP H16 H23 H 0 1 N N N N N N -31.950 93.651 53.699 2.236 -0.437 -1.837 H16 A1CNP 54 A1CNP H15 H24 H 0 1 N N N N N N -32.976 95.113 53.882 1.388 -1.950 -1.434 H15 A1CNP 55 A1CNP H23 H25 H 0 1 N N N N N N -34.112 97.168 46.137 -5.984 2.076 -0.021 H23 A1CNP 56 A1CNP H25 H26 H 0 1 N N N N N N -34.518 93.073 57.815 5.855 -2.323 0.401 H25 A1CNP 57 A1CNP H24 H27 H 0 1 N N N N N N -33.384 94.459 57.962 6.028 -2.080 -1.353 H24 A1CNP 58 A1CNP H27 H28 H 0 1 N N N N N N -33.837 91.689 54.337 0.848 -2.327 0.949 H27 A1CNP 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CNP C17 C14 SING N N 1 A1CNP C17 C18 SING N N 2 A1CNP O2 C14 DOUB N N 3 A1CNP C14 N1 SING N N 4 A1CNP O1 C13 DOUB N N 5 A1CNP C18 C23 SING N N 6 A1CNP N1 C15 SING N N 7 A1CNP C23 C15 SING N N 8 A1CNP C23 N2 SING N N 9 A1CNP C15 O3 DOUB N N 10 A1CNP C13 N2 SING N N 11 A1CNP C13 C9 SING N N 12 A1CNP N2 C16 SING N N 13 A1CNP C9 C4 DOUB Y N 14 A1CNP C9 C11 SING Y N 15 A1CNP C4 C5 SING Y N 16 A1CNP C16 C11 SING N N 17 A1CNP C11 C8 DOUB Y N 18 A1CNP C5 C10 DOUB Y N 19 A1CNP C8 C10 SING Y N 20 A1CNP C10 C24 SING N N 21 A1CNP C24 O4 SING N N 22 A1CNP C24 C20 SING N N 23 A1CNP C24 C19 SING N N 24 A1CNP C20 C22 SING N N 25 A1CNP C19 C21 SING N N 26 A1CNP C22 N3 SING N N 27 A1CNP C21 N3 SING N N 28 A1CNP N3 C25 SING N N 29 A1CNP C25 C12 SING N N 30 A1CNP C12 C6 DOUB Y N 31 A1CNP C12 C7 SING Y N 32 A1CNP C6 C2 SING Y N 33 A1CNP C7 C3 DOUB Y N 34 A1CNP C2 C1 DOUB Y N 35 A1CNP C3 C1 SING Y N 36 A1CNP N1 H26 SING N N 37 A1CNP C4 H4 SING N N 38 A1CNP C5 H5 SING N N 39 A1CNP C6 H6 SING N N 40 A1CNP C7 H7 SING N N 41 A1CNP C8 H8 SING N N 42 A1CNP C17 H11 SING N N 43 A1CNP C17 H12 SING N N 44 A1CNP C20 H18 SING N N 45 A1CNP C20 H17 SING N N 46 A1CNP C21 H19 SING N N 47 A1CNP C21 H20 SING N N 48 A1CNP C22 H21 SING N N 49 A1CNP C22 H22 SING N N 50 A1CNP C1 H1 SING N N 51 A1CNP C2 H2 SING N N 52 A1CNP C3 H3 SING N N 53 A1CNP C16 H10 SING N N 54 A1CNP C16 H9 SING N N 55 A1CNP C18 H13 SING N N 56 A1CNP C18 H14 SING N N 57 A1CNP C19 H16 SING N N 58 A1CNP C19 H15 SING N N 59 A1CNP C23 H23 SING N N 60 A1CNP C25 H25 SING N N 61 A1CNP C25 H24 SING N N 62 A1CNP O4 H27 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CNP SMILES ACDLabs 14.52 "O=C1NC(=O)CCC1N1Cc2cc(ccc2C1=O)C1(O)CCN(Cc2ccccc2)CC1" A1CNP InChI InChI 1.06 "InChI=1S/C25H27N3O4/c29-22-9-8-21(23(30)26-22)28-16-18-14-19(6-7-20(18)24(28)31)25(32)10-12-27(13-11-25)15-17-4-2-1-3-5-17/h1-7,14,21,32H,8-13,15-16H2,(H,26,29,30)/t21-/m0/s1" A1CNP InChIKey InChI 1.06 JLBQVXKEOWCSBT-NRFANRHFSA-N A1CNP SMILES_CANONICAL CACTVS 3.385 "OC1(CCN(CC1)Cc2ccccc2)c3ccc4C(=O)N(Cc4c3)[C@H]5CCC(=O)NC5=O" A1CNP SMILES CACTVS 3.385 "OC1(CCN(CC1)Cc2ccccc2)c3ccc4C(=O)N(Cc4c3)[CH]5CCC(=O)NC5=O" A1CNP SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CN2CCC(CC2)(c3ccc4c(c3)CN(C4=O)[C@H]5CCC(=O)NC5=O)O" A1CNP SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CN2CCC(CC2)(c3ccc4c(c3)CN(C4=O)C5CCC(=O)NC5=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CNP "SYSTEMATIC NAME" ACDLabs 14.52 "(3S)-3-[5-(1-benzyl-4-hydroxypiperidin-4-yl)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione" A1CNP "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{S})-3-[3-oxidanylidene-6-[4-oxidanyl-1-(phenylmethyl)piperidin-4-yl]-1~{H}-isoindol-2-yl]piperidine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CNP "Create component" 2025-08-15 RCSB A1CNP "Initial release" 2025-10-01 RCSB #