data_A1COG # _chem_comp.id A1COG _chem_comp.name "(4M)-4-[(4S)-3-[4-(cyclohexyloxy)phenyl]-6,7-dihydroimidazo[1,2-a]pyrimidin-1(5H)-yl]-3-ethylbenzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H30 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-21 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.553 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1COG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Q4A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1COG C1 C1 C 0 1 N N N N N N -21.985 -42.750 -20.614 -2.833 1.205 2.792 C1 A1COG 1 A1COG C2 C2 C 0 1 N N N N N N -20.495 -42.500 -20.588 -3.862 0.236 2.206 C2 A1COG 2 A1COG C3 C3 C 0 1 Y N N N N N -20.003 -41.215 -21.203 -4.336 0.752 0.872 C3 A1COG 3 A1COG C4 C4 C 0 1 Y N N N N N -20.917 -40.213 -21.495 -5.486 1.504 0.795 C4 A1COG 4 A1COG C5 C5 C 0 1 Y N N N N N -20.502 -39.013 -22.058 -5.925 1.983 -0.443 C5 A1COG 5 A1COG C6 C6 C 0 1 N N N N N N -21.468 -37.987 -22.354 -7.122 2.765 -0.527 C6 A1COG 6 A1COG N1 N1 N 0 1 N N N N N N -22.210 -37.165 -22.645 -8.071 3.386 -0.593 N1 A1COG 7 A1COG C7 C7 C 0 1 Y N N N N N -19.159 -38.802 -22.335 -5.193 1.696 -1.599 C7 A1COG 8 A1COG C8 C8 C 0 1 Y N N N N N -18.239 -39.786 -22.049 -4.043 0.944 -1.514 C8 A1COG 9 A1COG C9 C9 C 0 1 Y N N N N N -18.652 -40.984 -21.476 -3.606 0.474 -0.280 C9 A1COG 10 A1COG N2 N2 N 0 1 N N N N N N -17.677 -42.008 -21.206 -2.436 -0.283 -0.197 N2 A1COG 11 A1COG C10 C10 C 0 1 N N N N N N -17.078 -42.716 -22.218 -1.155 0.213 0.003 C10 A1COG 12 A1COG C11 C11 C 0 1 N N N N N N -16.204 -43.599 -21.660 -0.295 -0.820 0.012 C11 A1COG 13 A1COG C12 C12 C 0 1 Y N N N N N -15.354 -44.557 -22.398 1.170 -0.730 0.199 C12 A1COG 14 A1COG C13 C13 C 0 1 Y N N N N N -13.962 -44.460 -22.357 1.908 0.221 -0.507 C13 A1COG 15 A1COG C14 C14 C 0 1 Y N N N N N -13.176 -45.364 -23.060 3.273 0.302 -0.329 C14 A1COG 16 A1COG C15 C15 C 0 1 Y N N N N N -13.775 -46.372 -23.806 3.913 -0.561 0.550 C15 A1COG 17 A1COG O1 O1 O 0 1 N N N N N N -13.028 -47.264 -24.493 5.259 -0.478 0.722 O1 A1COG 18 A1COG C16 C16 C 0 1 N N N N N N -11.948 -48.052 -23.839 5.965 0.436 -0.119 C16 A1COG 19 A1COG C17 C17 C 0 1 N N N N N N -10.679 -47.229 -23.759 7.420 -0.017 -0.255 C17 A1COG 20 A1COG C18 C18 C 0 1 N N N N N N -10.095 -46.965 -25.144 8.177 0.961 -1.155 C18 A1COG 21 A1COG C19 C19 C 0 1 N N N N N N -9.864 -48.265 -25.893 8.134 2.360 -0.537 C19 A1COG 22 A1COG C20 C20 C 0 1 N N N N N N -11.133 -49.094 -25.985 6.679 2.813 -0.401 C20 A1COG 23 A1COG C21 C21 C 0 1 N N N N N N -11.744 -49.341 -24.607 5.923 1.835 0.500 C21 A1COG 24 A1COG C22 C22 C 0 1 Y N N N N N -15.158 -46.480 -23.854 3.182 -1.508 1.254 C22 A1COG 25 A1COG C23 C23 C 0 1 Y N N N N N -15.943 -45.573 -23.153 1.816 -1.592 1.086 C23 A1COG 26 A1COG N3 N3 N 0 1 N N N N N N -16.276 -43.434 -20.269 -1.021 -1.984 -0.185 N3 A1COG 27 A1COG C24 C24 C 0 1 N N N N N N -15.528 -44.153 -19.232 -0.541 -3.367 -0.278 C24 A1COG 28 A1COG C25 C25 C 0 1 N N N N N N -15.493 -43.332 -17.965 -1.571 -4.153 -1.104 C25 A1COG 29 A1COG C26 C26 C 0 1 N N N N N N -16.845 -42.710 -17.695 -2.967 -3.947 -0.513 C26 A1COG 30 A1COG N4 N4 N 0 1 N N N N N N -17.513 -42.053 -18.822 -3.304 -2.520 -0.476 N4 A1COG 31 A1COG C27 C27 C 0 1 N N N N N N -17.190 -42.463 -20.002 -2.351 -1.643 -0.293 C27 A1COG 32 A1COG H1 H1 H 0 1 N N N N N N -22.204 -43.716 -20.136 -1.985 1.289 2.113 H1 A1COG 33 A1COG H2 H2 H 0 1 N N N N N N -22.501 -41.946 -20.069 -3.291 2.185 2.924 H2 A1COG 34 A1COG H3 H3 H 0 1 N N N N N N -22.335 -42.769 -21.657 -2.490 0.831 3.757 H3 A1COG 35 A1COG H4 H4 H 0 1 N N N N N N -20.176 -42.507 -19.535 -3.404 -0.744 2.074 H4 A1COG 36 A1COG H5 H5 H 0 1 N N N N N N -20.010 -43.330 -21.123 -4.710 0.152 2.885 H5 A1COG 37 A1COG H6 H6 H 0 1 N N N N N N -21.964 -40.368 -21.282 -6.050 1.723 1.690 H6 A1COG 38 A1COG H7 H7 H 0 1 N N N N N N -18.836 -37.869 -22.773 -5.529 2.065 -2.557 H7 A1COG 39 A1COG H8 H8 H 0 1 N N N N N N -17.194 -39.627 -22.270 -3.477 0.722 -2.407 H8 A1COG 40 A1COG H9 H9 H 0 1 N N N N N N -17.267 -42.594 -23.274 -0.894 1.254 0.129 H9 A1COG 41 A1COG H10 H10 H 0 1 N N N N N N -13.494 -43.679 -21.776 1.411 0.892 -1.192 H10 A1COG 42 A1COG H11 H11 H 0 1 N N N N N N -12.100 -45.284 -23.027 3.845 1.037 -0.875 H11 A1COG 43 A1COG H12 H12 H 0 1 N N N N N N -12.264 -48.303 -22.816 5.498 0.459 -1.103 H12 A1COG 44 A1COG H13 H13 H 0 1 N N N N N N -10.907 -46.266 -23.278 7.887 -0.041 0.730 H13 A1COG 45 A1COG H14 H14 H 0 1 N N N N N N -9.937 -47.774 -23.156 7.451 -1.014 -0.695 H14 A1COG 46 A1COG H15 H15 H 0 1 N N N N N N -10.795 -46.339 -25.717 9.213 0.638 -1.253 H15 A1COG 47 A1COG H16 H16 H 0 1 N N N N N N -9.136 -46.437 -25.036 7.710 0.985 -2.140 H16 A1COG 48 A1COG H17 H17 H 0 1 N N N N N N -9.515 -48.033 -26.910 8.601 2.337 0.447 H17 A1COG 49 A1COG H18 H18 H 0 1 N N N N N N -9.095 -48.848 -25.366 8.673 3.057 -1.179 H18 A1COG 50 A1COG H19 H19 H 0 1 N N N N N N -11.864 -48.559 -26.609 6.649 3.810 0.040 H19 A1COG 51 A1COG H20 H20 H 0 1 N N N N N N -10.894 -50.063 -26.448 6.212 2.837 -1.385 H20 A1COG 52 A1COG H21 H21 H 0 1 N N N N N N -12.718 -49.837 -24.734 4.886 2.158 0.597 H21 A1COG 53 A1COG H22 H22 H 0 1 N N N N N N -11.072 -49.995 -24.032 6.390 1.811 1.484 H22 A1COG 54 A1COG H23 H23 H 0 1 N N N N N N -15.621 -47.265 -24.433 3.683 -2.178 1.937 H23 A1COG 55 A1COG H24 H24 H 0 1 N N N N N N -17.019 -45.655 -23.192 1.247 -2.326 1.638 H24 A1COG 56 A1COG H25 H25 H 0 1 N N N N N N -16.019 -45.116 -19.029 0.428 -3.391 -0.775 H25 A1COG 57 A1COG H26 H26 H 0 1 N N N N N N -14.500 -44.331 -19.580 -0.459 -3.799 0.720 H26 A1COG 58 A1COG H27 H27 H 0 1 N N N N N N -15.219 -43.982 -17.121 -1.557 -3.798 -2.134 H27 A1COG 59 A1COG H28 H28 H 0 1 N N N N N N -14.743 -42.534 -18.072 -1.321 -5.214 -1.082 H28 A1COG 60 A1COG H29 H29 H 0 1 N N N N N N -17.511 -43.508 -17.334 -3.698 -4.474 -1.126 H29 A1COG 61 A1COG H30 H30 H 0 1 N N N N N N -16.712 -41.957 -16.904 -2.992 -4.349 0.500 H30 A1COG 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1COG C1 C2 SING N N 1 A1COG C2 C3 SING N N 2 A1COG C3 C4 DOUB Y N 3 A1COG C4 C5 SING Y N 4 A1COG C5 C6 SING N N 5 A1COG C6 N1 TRIP N N 6 A1COG C5 C7 DOUB Y N 7 A1COG C7 C8 SING Y N 8 A1COG C8 C9 DOUB Y N 9 A1COG C9 N2 SING N N 10 A1COG N2 C10 SING N N 11 A1COG C10 C11 DOUB N N 12 A1COG C11 C12 SING N N 13 A1COG C12 C13 DOUB Y N 14 A1COG C13 C14 SING Y N 15 A1COG C14 C15 DOUB Y N 16 A1COG C15 O1 SING N N 17 A1COG O1 C16 SING N N 18 A1COG C16 C17 SING N N 19 A1COG C17 C18 SING N N 20 A1COG C18 C19 SING N N 21 A1COG C19 C20 SING N N 22 A1COG C20 C21 SING N N 23 A1COG C15 C22 SING Y N 24 A1COG C22 C23 DOUB Y N 25 A1COG C11 N3 SING N N 26 A1COG N3 C24 SING N N 27 A1COG C24 C25 SING N N 28 A1COG C25 C26 SING N N 29 A1COG C26 N4 SING N N 30 A1COG N4 C27 DOUB N N 31 A1COG C3 C9 SING Y N 32 A1COG N2 C27 SING N N 33 A1COG C12 C23 SING Y N 34 A1COG N3 C27 SING N N 35 A1COG C16 C21 SING N N 36 A1COG C1 H1 SING N N 37 A1COG C1 H2 SING N N 38 A1COG C1 H3 SING N N 39 A1COG C2 H4 SING N N 40 A1COG C2 H5 SING N N 41 A1COG C4 H6 SING N N 42 A1COG C7 H7 SING N N 43 A1COG C8 H8 SING N N 44 A1COG C10 H9 SING N N 45 A1COG C13 H10 SING N N 46 A1COG C14 H11 SING N N 47 A1COG C16 H12 SING N N 48 A1COG C17 H13 SING N N 49 A1COG C17 H14 SING N N 50 A1COG C18 H15 SING N N 51 A1COG C18 H16 SING N N 52 A1COG C19 H17 SING N N 53 A1COG C19 H18 SING N N 54 A1COG C20 H19 SING N N 55 A1COG C20 H20 SING N N 56 A1COG C21 H21 SING N N 57 A1COG C21 H22 SING N N 58 A1COG C22 H23 SING N N 59 A1COG C23 H24 SING N N 60 A1COG C24 H25 SING N N 61 A1COG C24 H26 SING N N 62 A1COG C25 H27 SING N N 63 A1COG C25 H28 SING N N 64 A1COG C26 H29 SING N N 65 A1COG C26 H30 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1COG SMILES ACDLabs 14.52 "N#Cc1ccc(c(CC)c1)N1C=C(N2CCCN=C21)c1ccc(OC2CCCCC2)cc1" A1COG InChI InChI 1.06 "InChI=1S/C27H30N4O/c1-2-21-17-20(18-28)9-14-25(21)31-19-26(30-16-6-15-29-27(30)31)22-10-12-24(13-11-22)32-23-7-4-3-5-8-23/h9-14,17,19,23H,2-8,15-16H2,1H3" A1COG InChIKey InChI 1.06 KXXDLXDVGGIDAV-UHFFFAOYSA-N A1COG SMILES_CANONICAL CACTVS 3.385 "CCc1cc(ccc1N2C=C(N3CCCN=C23)c4ccc(OC5CCCCC5)cc4)C#N" A1COG SMILES CACTVS 3.385 "CCc1cc(ccc1N2C=C(N3CCCN=C23)c4ccc(OC5CCCCC5)cc4)C#N" A1COG SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCc1cc(ccc1N2C=C(N3C2=NCCC3)c4ccc(cc4)OC5CCCCC5)C#N" A1COG SMILES "OpenEye OEToolkits" 3.1.0.0 "CCc1cc(ccc1N2C=C(N3C2=NCCC3)c4ccc(cc4)OC5CCCCC5)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1COG "SYSTEMATIC NAME" ACDLabs 14.52 "(4M)-4-[(4S)-3-[4-(cyclohexyloxy)phenyl]-6,7-dihydroimidazo[1,2-a]pyrimidin-1(5H)-yl]-3-ethylbenzonitrile" A1COG "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[3-(4-cyclohexyloxyphenyl)-6,7-dihydro-5~{H}-imidazo[1,2-a]pyrimidin-1-yl]-3-ethyl-benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1COG "Create component" 2025-08-21 RCSB A1COG "Initial release" 2026-08-26 RCSB #