data_A1CTF # _chem_comp.id A1CTF _chem_comp.name "2-{4-[(1R,2S)-2-{[(3S)-3-(1,1-dioxo-1lambda~6~-thiomorpholin-4-yl)pyrrolidin-1-yl]methyl}cyclopropyl]-2-methyl-1H-1,3-benzimidazol-1-yl}-N-(2,4,6-trichlorophenyl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H32 Cl3 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-15 _chem_comp.pdbx_modified_date 2026-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 625.009 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CTF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Y8V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CTF C10 C1 C 0 1 N N N N N N -10.265 -21.457 -3.430 4.799 0.278 2.221 C10 A1CTF 1 A1CTF C11 C2 C 0 1 N N S N N N -11.410 -20.621 -3.865 4.780 -0.510 0.891 C11 A1CTF 2 A1CTF C13 C3 C 0 1 N N N N N N -13.237 -22.471 -6.754 8.297 -1.744 1.284 C13 A1CTF 3 A1CTF C14 C4 C 0 1 N N N N N N -14.508 -22.740 -4.485 7.588 -1.435 -1.413 C14 A1CTF 4 A1CTF C17 C5 C 0 1 Y N N N N N -7.937 -15.179 -6.038 0.553 3.462 -1.843 C17 A1CTF 5 A1CTF C21 C6 C 0 1 N N N N N N -9.036 -11.366 -2.913 -4.451 2.361 -0.599 C21 A1CTF 6 A1CTF C27 C7 C 0 1 Y N N N N N -14.929 -11.379 -4.600 -5.993 -3.081 1.173 C27 A1CTF 7 A1CTF C28 C8 C 0 1 Y N N N N N -13.544 -11.262 -4.552 -6.005 -1.720 0.933 C28 A1CTF 8 A1CTF C1 C9 C 0 1 N N N N N N -7.627 -12.382 -0.604 -3.917 3.657 2.158 C1 A1CTF 9 A1CTF C12 C10 C 0 1 N N N N N N -12.009 -21.937 -5.835 6.780 -1.729 1.492 C12 A1CTF 10 A1CTF C15 C11 C 0 1 N N N N N N -13.244 -22.109 -3.814 6.164 -1.462 -0.849 C15 A1CTF 11 A1CTF C16 C12 C 0 1 N N N N N N -10.780 -19.373 -4.524 4.154 0.450 -0.137 C16 A1CTF 12 A1CTF C18 C13 C 0 1 Y N N N N N -8.697 -14.031 -6.336 -0.382 2.832 -2.651 C18 A1CTF 13 A1CTF C19 C14 C 0 1 Y N N N N N -8.905 -13.086 -5.365 -1.663 2.607 -2.193 C19 A1CTF 14 A1CTF C2 C15 C 0 1 Y N N N N N -7.732 -13.060 -1.961 -2.920 3.520 1.036 C2 A1CTF 15 A1CTF C20 C16 C 0 1 Y N N N N N -8.384 -13.256 -4.126 -2.018 3.015 -0.914 C20 A1CTF 16 A1CTF C22 C17 C 0 1 N N N N N N -10.546 -11.736 -2.760 -4.482 0.900 -0.231 C22 A1CTF 17 A1CTF C23 C18 C 0 1 Y N N N N N -12.954 -11.020 -3.339 -5.552 -1.226 -0.284 C23 A1CTF 18 A1CTF C24 C19 C 0 1 Y N N N N N -13.704 -10.893 -2.195 -5.087 -2.103 -1.256 C24 A1CTF 19 A1CTF C25 C20 C 0 1 Y N N N N N -15.066 -11.002 -2.229 -5.077 -3.463 -1.011 C25 A1CTF 20 A1CTF C26 C21 C 0 1 Y N N N N N -15.635 -11.246 -3.440 -5.529 -3.952 0.203 C26 A1CTF 21 A1CTF C3 C22 C 0 1 Y N N N N N -7.597 -14.427 -3.791 -1.070 3.653 -0.096 C3 A1CTF 22 A1CTF C4 C23 C 0 1 Y N N N N N -7.386 -15.351 -4.775 0.222 3.870 -0.582 C4 A1CTF 23 A1CTF C5 C24 C 0 1 N N R N N N -6.645 -16.668 -4.360 1.251 4.547 0.287 C5 A1CTF 24 A1CTF C6 C25 C 0 1 N N N N N N -6.763 -17.777 -5.394 2.582 4.931 -0.364 C6 A1CTF 25 A1CTF C7 C26 C 0 1 N N S N N N -7.311 -18.102 -4.029 2.521 3.762 0.621 C7 A1CTF 26 A1CTF C8 C27 C 0 1 N N N N N N -8.910 -18.190 -3.943 2.649 2.349 0.048 C8 A1CTF 27 A1CTF C9 C28 C 0 1 N N N N N N -9.086 -20.412 -3.242 3.705 1.353 2.002 C9 A1CTF 28 A1CTF N1 N1 N 0 1 Y N N N N N -7.191 -14.257 -2.338 -1.688 3.934 1.080 N1 A1CTF 29 A1CTF N2 N2 N 0 1 N N N N N N -9.398 -19.333 -4.271 3.867 1.717 0.571 N2 A1CTF 30 A1CTF N3 N3 N 0 1 N N N N N N -12.399 -21.307 -4.594 6.148 -0.868 0.490 N3 A1CTF 31 A1CTF N4 N4 N 0 1 Y N N N N N -8.353 -12.619 -3.008 -3.178 2.946 -0.170 N4 A1CTF 32 A1CTF N5 N5 N 0 1 N N N N N N -11.498 -10.829 -3.329 -5.564 0.153 -0.530 N5 A1CTF 33 A1CTF O1 O1 O 0 1 N N N N N N -13.631 -24.668 -5.772 8.182 -3.795 -0.378 O1 A1CTF 34 A1CTF O2 O2 O 0 1 N N N N N N -15.521 -23.439 -6.653 10.011 -2.188 -0.677 O2 A1CTF 35 A1CTF O3 O3 O 0 1 N N N N N N -10.947 -12.773 -2.245 -3.534 0.396 0.334 O3 A1CTF 36 A1CTF S1 S1 S 0 1 N N N N N N -14.329 -23.404 -5.943 8.654 -2.455 -0.350 S1 A1CTF 37 A1CTF CL1 CL1 CL 0 0 N N N N N N -12.977 -10.598 -0.661 -4.521 -1.490 -2.779 CL1 A1CTF 38 A1CTF CL2 CL2 CL 0 0 N N N N N N -17.352 -11.342 -3.456 -5.516 -5.661 0.507 CL2 A1CTF 39 A1CTF CL3 CL3 CL 0 0 N N N N N N -12.521 -11.309 -5.958 -6.587 -0.628 2.151 CL3 A1CTF 40 A1CTF H13 H1 H 0 1 N N N N N N -10.490 -21.969 -2.483 4.541 -0.371 3.057 H13 A1CTF 41 A1CTF H12 H2 H 0 1 N N N N N N -10.010 -22.202 -4.198 5.771 0.744 2.382 H12 A1CTF 42 A1CTF H14 H3 H 0 1 N N N N N N -11.887 -20.255 -2.944 4.169 -1.407 0.992 H14 A1CTF 43 A1CTF H19 H4 H 0 1 N N N N N N -12.818 -23.067 -7.578 8.683 -0.725 1.332 H19 A1CTF 44 A1CTF H20 H5 H 0 1 N N N N N N -13.766 -21.598 -7.165 8.767 -2.352 2.058 H20 A1CTF 45 A1CTF H17 H6 H 0 1 N N N N N N -15.263 -21.945 -4.576 7.587 -1.839 -2.426 H17 A1CTF 46 A1CTF H18 H7 H 0 1 N N N N N N -14.881 -23.524 -3.810 7.956 -0.410 -1.429 H18 A1CTF 47 A1CTF H25 H8 H 0 1 N N N N N N -7.782 -15.931 -6.797 1.554 3.627 -2.213 H25 A1CTF 48 A1CTF H28 H9 H 0 1 N N N N N N -8.686 -10.801 -2.036 -4.554 2.466 -1.679 H28 A1CTF 49 A1CTF H29 H10 H 0 1 N N N N N N -8.875 -10.769 -3.822 -5.273 2.878 -0.104 H29 A1CTF 50 A1CTF H32 H11 H 0 1 N N N N N N -15.435 -11.571 -5.535 -6.341 -3.465 2.120 H32 A1CTF 51 A1CTF H2 H12 H 0 1 N N N N N N -7.029 -13.008 0.074 -4.451 4.602 2.056 H2 A1CTF 52 A1CTF H3 H13 H 0 1 N N N N N N -7.142 -11.402 -0.721 -4.628 2.832 2.115 H3 A1CTF 53 A1CTF H1 H14 H 0 1 N N N N N N -8.634 -12.245 -0.184 -3.394 3.637 3.114 H1 A1CTF 54 A1CTF H22 H15 H 0 1 N N N N N N -11.366 -22.796 -5.593 6.391 -2.743 1.395 H22 A1CTF 55 A1CTF H21 H16 H 0 1 N N N N N N -11.437 -21.205 -6.423 6.554 -1.350 2.489 H21 A1CTF 56 A1CTF H15 H17 H 0 1 N N N N N N -12.635 -22.939 -3.425 5.504 -0.894 -1.504 H15 A1CTF 57 A1CTF H16 H18 H 0 1 N N N N N N -13.597 -21.489 -2.977 5.817 -2.493 -0.790 H16 A1CTF 58 A1CTF H23 H19 H 0 1 N N N N N N -11.251 -18.468 -4.112 4.855 0.631 -0.952 H23 A1CTF 59 A1CTF H24 H20 H 0 1 N N N N N N -10.949 -19.412 -5.610 3.229 0.025 -0.526 H24 A1CTF 60 A1CTF H26 H21 H 0 1 N N N N N N -9.113 -13.896 -7.323 -0.105 2.516 -3.646 H26 A1CTF 61 A1CTF H27 H22 H 0 1 N N N N N N -9.486 -12.203 -5.588 -2.388 2.117 -2.826 H27 A1CTF 62 A1CTF H31 H23 H 0 1 N N N N N N -15.663 -10.899 -1.335 -4.716 -4.145 -1.766 H31 A1CTF 63 A1CTF H4 H24 H 0 1 N N N N N N -5.646 -16.523 -3.924 0.854 5.213 1.053 H4 A1CTF 64 A1CTF H5 H25 H 0 1 N N N N N N -7.459 -17.654 -6.237 2.713 4.694 -1.419 H5 A1CTF 65 A1CTF H6 H26 H 0 1 N N N N N N -5.852 -18.286 -5.742 3.061 5.850 -0.025 H6 A1CTF 66 A1CTF H7 H27 H 0 1 N N N N N N -6.738 -18.774 -3.373 2.960 3.911 1.607 H7 A1CTF 67 A1CTF H8 H28 H 0 1 N N N N N N -9.333 -17.430 -4.616 1.780 1.759 0.338 H8 A1CTF 68 A1CTF H9 H29 H 0 1 N N N N N N -9.211 -17.972 -2.908 2.706 2.401 -1.040 H9 A1CTF 69 A1CTF H10 H30 H 0 1 N N N N N N -8.111 -20.879 -3.445 2.715 0.936 2.183 H10 A1CTF 70 A1CTF H11 H31 H 0 1 N N N N N N -9.088 -19.996 -2.224 3.881 2.217 2.644 H11 A1CTF 71 A1CTF H30 H34 H 0 1 N N N N N N -11.142 -9.997 -3.754 -6.350 0.570 -0.915 H30 A1CTF 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CTF C13 S1 SING N N 1 A1CTF C13 C12 SING N N 2 A1CTF O2 S1 DOUB N N 3 A1CTF C18 C17 DOUB Y N 4 A1CTF C18 C19 SING Y N 5 A1CTF C17 C4 SING Y N 6 A1CTF CL3 C28 SING N N 7 A1CTF S1 O1 DOUB N N 8 A1CTF S1 C14 SING N N 9 A1CTF C12 N3 SING N N 10 A1CTF C6 C5 SING N N 11 A1CTF C6 C7 SING N N 12 A1CTF C19 C20 DOUB Y N 13 A1CTF C4 C5 SING N N 14 A1CTF C4 C3 DOUB Y N 15 A1CTF C27 C28 DOUB Y N 16 A1CTF C27 C26 SING Y N 17 A1CTF N3 C11 SING N N 18 A1CTF N3 C15 SING N N 19 A1CTF C28 C23 SING Y N 20 A1CTF C16 N2 SING N N 21 A1CTF C16 C11 SING N N 22 A1CTF C14 C15 SING N N 23 A1CTF C5 C7 SING N N 24 A1CTF N2 C8 SING N N 25 A1CTF N2 C9 SING N N 26 A1CTF C20 C3 SING Y N 27 A1CTF C20 N4 SING Y N 28 A1CTF C7 C8 SING N N 29 A1CTF C11 C10 SING N N 30 A1CTF C3 N1 SING Y N 31 A1CTF CL2 C26 SING N N 32 A1CTF C26 C25 DOUB Y N 33 A1CTF C10 C9 SING N N 34 A1CTF C23 N5 SING N N 35 A1CTF C23 C24 DOUB Y N 36 A1CTF N5 C22 SING N N 37 A1CTF N4 C21 SING N N 38 A1CTF N4 C2 SING Y N 39 A1CTF C21 C22 SING N N 40 A1CTF C22 O3 DOUB N N 41 A1CTF N1 C2 DOUB Y N 42 A1CTF C25 C24 SING Y N 43 A1CTF C24 CL1 SING N N 44 A1CTF C2 C1 SING N N 45 A1CTF C10 H13 SING N N 46 A1CTF C10 H12 SING N N 47 A1CTF C11 H14 SING N N 48 A1CTF C13 H19 SING N N 49 A1CTF C13 H20 SING N N 50 A1CTF C14 H17 SING N N 51 A1CTF C14 H18 SING N N 52 A1CTF C17 H25 SING N N 53 A1CTF C21 H28 SING N N 54 A1CTF C21 H29 SING N N 55 A1CTF C27 H32 SING N N 56 A1CTF C1 H2 SING N N 57 A1CTF C1 H3 SING N N 58 A1CTF C1 H1 SING N N 59 A1CTF C12 H22 SING N N 60 A1CTF C12 H21 SING N N 61 A1CTF C15 H15 SING N N 62 A1CTF C15 H16 SING N N 63 A1CTF C16 H23 SING N N 64 A1CTF C16 H24 SING N N 65 A1CTF C18 H26 SING N N 66 A1CTF C19 H27 SING N N 67 A1CTF C25 H31 SING N N 68 A1CTF C5 H4 SING N N 69 A1CTF C6 H5 SING N N 70 A1CTF C6 H6 SING N N 71 A1CTF C7 H7 SING N N 72 A1CTF C8 H8 SING N N 73 A1CTF C8 H9 SING N N 74 A1CTF C9 H10 SING N N 75 A1CTF C9 H11 SING N N 76 A1CTF N5 H30 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CTF SMILES ACDLabs 14.52 "O=S1(=O)CCN(CC1)C1CCN(CC2CC2c2cccc3n(CC(=O)Nc4c(Cl)cc(Cl)cc4Cl)c(C)nc32)C1" A1CTF InChI InChI 1.06 "InChI=1S/C28H32Cl3N5O3S/c1-17-32-27-21(22-11-18(22)14-34-6-5-20(15-34)35-7-9-40(38,39)10-8-35)3-2-4-25(27)36(17)16-26(37)33-28-23(30)12-19(29)13-24(28)31/h2-4,12-13,18,20,22H,5-11,14-16H2,1H3,(H,33,37)/t18-,20+,22-/m1/s1" A1CTF InChIKey InChI 1.06 NSJWRHNSDCJZHU-KAGYGMCKSA-N A1CTF SMILES_CANONICAL CACTVS 3.385 "Cc1nc2c(cccc2n1CC(=O)Nc3c(Cl)cc(Cl)cc3Cl)[C@@H]4C[C@@H]4CN5CC[C@@H](C5)N6CC[S](=O)(=O)CC6" A1CTF SMILES CACTVS 3.385 "Cc1nc2c(cccc2n1CC(=O)Nc3c(Cl)cc(Cl)cc3Cl)[CH]4C[CH]4CN5CC[CH](C5)N6CC[S](=O)(=O)CC6" A1CTF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1nc2c(cccc2n1CC(=O)Nc3c(cc(cc3Cl)Cl)Cl)[C@@H]4C[C@@H]4CN5CC[C@@H](C5)N6CCS(=O)(=O)CC6" A1CTF SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1nc2c(cccc2n1CC(=O)Nc3c(cc(cc3Cl)Cl)Cl)C4CC4CN5CCC(C5)N6CCS(=O)(=O)CC6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CTF "SYSTEMATIC NAME" ACDLabs 14.52 "2-{4-[(1R,2S)-2-{[(3S)-3-(1,1-dioxo-1lambda~6~-thiomorpholin-4-yl)pyrrolidin-1-yl]methyl}cyclopropyl]-2-methyl-1H-1,3-benzimidazol-1-yl}-N-(2,4,6-trichlorophenyl)acetamide" A1CTF "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[4-[(1~{R},2~{S})-2-[[(3~{S})-3-[1,1-bis(oxidanylidene)-1,4-thiazinan-4-yl]pyrrolidin-1-yl]methyl]cyclopropyl]-2-methyl-benzimidazol-1-yl]-~{N}-[2,4,6-tris(chloranyl)phenyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CTF "Create component" 2025-09-15 RCSB A1CTF "Initial release" 2026-04-08 RCSB #