data_A1CTJ # _chem_comp.id A1CTJ _chem_comp.name "2-{2-amino-4-[(morpholin-4-yl)methyl]-1H-1,3-benzimidazol-1-yl}-N-(2,4,6-trichlorophenyl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H20 Cl3 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-15 _chem_comp.pdbx_modified_date 2026-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.764 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CTJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Y8T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CTJ CL1 CL1 CL 0 0 N N N N N N -11.671 12.338 13.335 3.504 -0.949 -2.672 CL1 A1CTJ 1 A1CTJ C8 C1 C 0 1 N N N N N N -18.264 5.520 17.140 -4.379 -1.492 -0.166 C8 A1CTJ 2 A1CTJ C9 C2 C 0 1 Y N N N N N -15.687 7.377 13.694 -3.920 2.065 1.759 C9 A1CTJ 3 A1CTJ C10 C3 C 0 1 Y N N N N N -14.716 8.239 13.242 -2.714 2.717 1.964 C10 A1CTJ 4 A1CTJ C11 C4 C 0 1 Y N N N N N -13.632 8.593 14.003 -1.703 2.627 1.029 C11 A1CTJ 5 A1CTJ C12 C5 C 0 1 Y N N N N N -13.649 8.070 15.344 -1.893 1.880 -0.123 C12 A1CTJ 6 A1CTJ C7 C6 C 0 1 N N N N N N -19.366 6.015 18.093 -4.207 -2.948 0.274 C7 A1CTJ 7 A1CTJ C2 C7 C 0 1 Y N N N N N -14.631 7.228 15.793 -3.113 1.217 -0.336 C2 A1CTJ 8 A1CTJ C3 C8 C 0 1 Y N N N N N -15.700 6.851 15.014 -4.127 1.319 0.620 C3 A1CTJ 9 A1CTJ C6 C9 C 0 1 N N N N N N -19.536 7.992 16.927 -6.404 -2.939 1.228 C6 A1CTJ 10 A1CTJ O2 O1 O 0 1 N N N N N N -13.082 10.844 16.815 0.837 0.079 -0.322 O2 A1CTJ 11 A1CTJ N1 N1 N 0 1 N N N N N N -12.423 7.397 18.577 -1.399 0.293 -3.261 N1 A1CTJ 12 A1CTJ C4 C10 C 0 1 N N N N N N -16.789 5.924 15.563 -5.439 0.609 0.409 C4 A1CTJ 13 A1CTJ C5 C11 C 0 1 N N N N N N -18.379 7.551 16.014 -6.598 -1.482 0.798 C5 A1CTJ 14 A1CTJ O1 O2 O 0 1 N N N N N N -20.199 6.887 17.442 -5.490 -3.578 0.332 O1 A1CTJ 15 A1CTJ C13 C12 C 0 1 N N N N N N -11.571 9.000 16.337 0.264 2.066 -1.459 C13 A1CTJ 16 A1CTJ C14 C13 C 0 1 N N N N N N -12.004 10.477 16.451 1.242 1.078 -0.877 C14 A1CTJ 17 A1CTJ C1 C14 C 0 1 Y N N N N N -13.188 7.488 17.372 -1.836 0.794 -2.053 C1 A1CTJ 18 A1CTJ C15 C15 C 0 1 Y N N N N N -11.182 12.760 15.947 3.473 0.442 -0.344 C15 A1CTJ 19 A1CTJ C16 C16 C 0 1 Y N N N N N -11.545 13.353 14.766 3.986 -0.651 -1.031 C16 A1CTJ 20 A1CTJ N2 N2 N 0 1 Y N N N N N -14.305 6.865 17.061 -3.016 0.573 -1.529 N2 A1CTJ 21 A1CTJ C18 C17 C 0 1 Y N N N N N -11.598 15.515 15.678 5.265 -1.263 0.900 C18 A1CTJ 22 A1CTJ C20 C18 C 0 1 Y N N N N N -11.072 13.626 16.961 3.865 0.680 0.967 C20 A1CTJ 23 A1CTJ C17 C19 C 0 1 Y N N N N N -11.764 14.688 14.649 4.881 -1.501 -0.408 C17 A1CTJ 24 A1CTJ C19 C20 C 0 1 Y N N N N N -11.260 15.006 16.908 4.760 -0.173 1.586 C19 A1CTJ 25 A1CTJ N3 N3 N 0 1 N N N N N N -17.534 6.522 16.503 -5.292 -0.809 0.763 N3 A1CTJ 26 A1CTJ N4 N4 N 0 1 Y N N N N N -12.728 8.217 16.350 -1.103 1.595 -1.225 N4 A1CTJ 27 A1CTJ N5 N5 N 0 1 N N N N N N -10.999 11.346 16.033 2.567 1.305 -0.974 N5 A1CTJ 28 A1CTJ CL2 CL2 CL 0 0 N N N N N N -11.912 17.217 15.526 6.388 -2.333 1.681 CL2 A1CTJ 29 A1CTJ CL3 CL3 CL 0 0 N N N N N N -10.601 12.977 18.528 3.232 2.049 1.828 CL3 A1CTJ 30 A1CTJ H1 H1 H 0 1 N N N N N N -18.738 4.900 16.365 -3.410 -0.993 -0.157 H1 A1CTJ 31 A1CTJ H2 H2 H 0 1 N N N N N N -17.562 4.906 17.722 -4.794 -1.462 -1.173 H2 A1CTJ 32 A1CTJ H3 H3 H 0 1 N N N N N N -16.475 7.087 13.015 -4.703 2.140 2.500 H3 A1CTJ 33 A1CTJ H4 H4 H 0 1 N N N N N N -14.811 8.653 12.249 -2.565 3.299 2.861 H4 A1CTJ 34 A1CTJ H5 H5 H 0 1 N N N N N N -12.831 9.213 13.627 -0.766 3.137 1.195 H5 A1CTJ 35 A1CTJ H6 H6 H 0 1 N N N N N N -19.950 5.154 18.452 -3.577 -3.473 -0.444 H6 A1CTJ 36 A1CTJ H7 H7 H 0 1 N N N N N N -18.903 6.526 18.950 -3.741 -2.979 1.258 H7 A1CTJ 37 A1CTJ H8 H8 H 0 1 N N N N N N -19.134 8.592 17.757 -6.003 -2.969 2.241 H8 A1CTJ 38 A1CTJ H9 H9 H 0 1 N N N N N N -20.244 8.600 16.345 -7.363 -3.457 1.201 H9 A1CTJ 39 A1CTJ H10 H10 H 0 1 N N N N N N -12.866 6.758 19.206 -1.983 -0.271 -3.792 H10 A1CTJ 40 A1CTJ H11 H11 H 0 1 N N N N N N -11.502 7.071 18.363 -0.508 0.504 -3.579 H11 A1CTJ 41 A1CTJ H12 H12 H 0 1 N N N N N N -17.444 5.616 14.734 -6.203 1.063 1.039 H12 A1CTJ 42 A1CTJ H13 H13 H 0 1 N N N N N N -16.311 5.036 16.002 -5.734 0.693 -0.637 H13 A1CTJ 43 A1CTJ H14 H14 H 0 1 N N N N N N -17.751 8.434 15.822 -7.050 -1.452 -0.194 H14 A1CTJ 44 A1CTJ H15 H15 H 0 1 N N N N N N -18.817 7.200 15.068 -7.249 -0.976 1.510 H15 A1CTJ 45 A1CTJ H16 H16 H 0 1 N N N N N N -10.927 8.731 17.187 0.401 3.037 -0.981 H16 A1CTJ 46 A1CTJ H17 H17 H 0 1 N N N N N N -11.022 8.842 15.397 0.438 2.161 -2.530 H17 A1CTJ 47 A1CTJ H18 H18 H 0 1 N N N N N N -12.081 15.088 13.697 5.280 -2.350 -0.942 H18 A1CTJ 48 A1CTJ H19 H19 H 0 1 N N N N N N -11.147 15.635 17.779 5.061 0.009 2.607 H19 A1CTJ 49 A1CTJ H21 H21 H 0 1 N N N N N N -10.110 10.963 15.782 2.894 2.066 -1.479 H21 A1CTJ 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CTJ C10 C9 DOUB Y N 1 A1CTJ C10 C11 SING Y N 2 A1CTJ CL1 C16 SING N N 3 A1CTJ C9 C3 SING Y N 4 A1CTJ C11 C12 DOUB Y N 5 A1CTJ C17 C16 DOUB Y N 6 A1CTJ C17 C18 SING Y N 7 A1CTJ C16 C15 SING Y N 8 A1CTJ C3 C4 SING N N 9 A1CTJ C3 C2 DOUB Y N 10 A1CTJ C12 C2 SING Y N 11 A1CTJ C12 N4 SING Y N 12 A1CTJ CL2 C18 SING N N 13 A1CTJ C4 N3 SING N N 14 A1CTJ C18 C19 DOUB Y N 15 A1CTJ C2 N2 SING Y N 16 A1CTJ C15 N5 SING N N 17 A1CTJ C15 C20 DOUB Y N 18 A1CTJ C5 N3 SING N N 19 A1CTJ C5 C6 SING N N 20 A1CTJ N5 C14 SING N N 21 A1CTJ C13 N4 SING N N 22 A1CTJ C13 C14 SING N N 23 A1CTJ N4 C1 SING Y N 24 A1CTJ C14 O2 DOUB N N 25 A1CTJ N3 C8 SING N N 26 A1CTJ C19 C20 SING Y N 27 A1CTJ C6 O1 SING N N 28 A1CTJ C20 CL3 SING N N 29 A1CTJ N2 C1 DOUB Y N 30 A1CTJ C8 C7 SING N N 31 A1CTJ C1 N1 SING N N 32 A1CTJ O1 C7 SING N N 33 A1CTJ C8 H1 SING N N 34 A1CTJ C8 H2 SING N N 35 A1CTJ C9 H3 SING N N 36 A1CTJ C10 H4 SING N N 37 A1CTJ C11 H5 SING N N 38 A1CTJ C7 H6 SING N N 39 A1CTJ C7 H7 SING N N 40 A1CTJ C6 H8 SING N N 41 A1CTJ C6 H9 SING N N 42 A1CTJ N1 H10 SING N N 43 A1CTJ N1 H11 SING N N 44 A1CTJ C4 H12 SING N N 45 A1CTJ C4 H13 SING N N 46 A1CTJ C5 H14 SING N N 47 A1CTJ C5 H15 SING N N 48 A1CTJ C13 H16 SING N N 49 A1CTJ C13 H17 SING N N 50 A1CTJ C17 H18 SING N N 51 A1CTJ C19 H19 SING N N 52 A1CTJ N5 H21 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CTJ SMILES ACDLabs 14.52 "Clc1cc(Cl)cc(Cl)c1NC(=O)Cn1c2cccc(CN3CCOCC3)c2nc1N" A1CTJ InChI InChI 1.06 "InChI=1S/C20H20Cl3N5O2/c21-13-8-14(22)19(15(23)9-13)25-17(29)11-28-16-3-1-2-12(18(16)26-20(28)24)10-27-4-6-30-7-5-27/h1-3,8-9H,4-7,10-11H2,(H2,24,26)(H,25,29)" A1CTJ InChIKey InChI 1.06 SLARJIAESFJVQH-UHFFFAOYSA-N A1CTJ SMILES_CANONICAL CACTVS 3.385 "Nc1nc2c(CN3CCOCC3)cccc2n1CC(=O)Nc4c(Cl)cc(Cl)cc4Cl" A1CTJ SMILES CACTVS 3.385 "Nc1nc2c(CN3CCOCC3)cccc2n1CC(=O)Nc4c(Cl)cc(Cl)cc4Cl" A1CTJ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2c(c1)n(c(n2)N)CC(=O)Nc3c(cc(cc3Cl)Cl)Cl)CN4CCOCC4" A1CTJ SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(c2c(c1)n(c(n2)N)CC(=O)Nc3c(cc(cc3Cl)Cl)Cl)CN4CCOCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CTJ "SYSTEMATIC NAME" ACDLabs 14.52 "2-{2-amino-4-[(morpholin-4-yl)methyl]-1H-1,3-benzimidazol-1-yl}-N-(2,4,6-trichlorophenyl)acetamide" A1CTJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[2-azanyl-4-(morpholin-4-ylmethyl)benzimidazol-1-yl]-~{N}-[2,4,6-tris(chloranyl)phenyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CTJ "Create component" 2025-09-15 RCSB A1CTJ "Initial release" 2026-04-08 RCSB #