data_A1CTK # _chem_comp.id A1CTK _chem_comp.name "2-(4-{[(3S)-3-(4-cyanopiperidin-1-yl)pyrrolidin-1-yl]methyl}-2-methyl-1H-1,3-benzimidazol-1-yl)-N-(2,4,6-trichlorophenyl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H29 Cl3 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-15 _chem_comp.pdbx_modified_date 2026-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 559.918 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CTK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Y8U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CTK C1 C1 C 0 1 N N N N N N -12.334 7.339 18.789 0.605 -1.225 3.215 C1 A1CTK 1 A1CTK C2 C2 C 0 1 Y N N N N N -12.960 7.606 17.466 0.312 -1.822 1.863 C2 A1CTK 2 A1CTK C3 C3 C 0 1 Y N N N N N -14.290 7.454 15.703 -0.780 -2.519 0.117 C3 A1CTK 3 A1CTK C4 C4 C 0 1 Y N N N N N -15.291 7.189 14.779 -1.717 -2.874 -0.857 C4 A1CTK 4 A1CTK C5 C5 C 0 1 N N N N N N -16.537 6.416 15.167 -3.183 -2.614 -0.623 C5 A1CTK 5 A1CTK C6 C6 C 0 1 N N N N N N -18.675 6.576 16.235 -2.938 -0.326 0.157 C6 A1CTK 6 A1CTK C12 C7 C 0 1 N N N N N N -22.430 13.226 13.810 -10.174 2.492 0.770 C12 A1CTK 7 A1CTK C13 C8 C 0 1 N N N N N N -22.152 11.179 15.151 -7.732 2.638 0.959 C13 A1CTK 8 A1CTK C14 C9 C 0 1 N N N N N N -21.200 10.297 15.977 -6.419 2.342 0.230 C14 A1CTK 9 A1CTK C15 C10 C 0 1 N N N N N N -17.894 8.487 15.222 -4.946 -0.962 -0.918 C15 A1CTK 10 A1CTK C16 C11 C 0 1 Y N N N N N -15.130 7.731 13.501 -1.302 -3.456 -2.021 C16 A1CTK 11 A1CTK C17 C12 C 0 1 Y N N N N N -14.065 8.583 13.173 0.045 -3.701 -2.249 C17 A1CTK 12 A1CTK C25 C13 C 0 1 Y N N N N N -11.701 15.590 15.678 6.406 2.524 -0.812 C25 A1CTK 13 A1CTK C26 C14 C 0 1 Y N N N N N -11.366 15.117 16.947 6.801 2.072 0.435 C26 A1CTK 14 A1CTK C27 C15 C 0 1 Y N N N N N -11.075 13.777 17.100 6.221 0.941 0.978 C27 A1CTK 15 A1CTK C10 C16 C 0 1 N N N N N N -20.260 11.939 13.813 -8.797 0.786 -0.332 C10 A1CTK 16 A1CTK C11 C17 C 0 1 N N N N N N -21.436 12.355 14.592 -8.909 2.264 0.053 C11 A1CTK 17 A1CTK C18 C18 C 0 1 Y N N N N N -13.118 8.888 14.095 0.987 -3.360 -1.302 C18 A1CTK 18 A1CTK C19 C19 C 0 1 Y N N N N N -13.224 8.297 15.366 0.585 -2.763 -0.116 C19 A1CTK 19 A1CTK C20 C20 C 0 1 N N N N N N -11.266 9.191 16.569 2.697 -2.348 1.233 C20 A1CTK 20 A1CTK C21 C21 C 0 1 N N N N N N -11.733 10.659 16.578 3.320 -1.077 0.715 C21 A1CTK 21 A1CTK C22 C22 C 0 1 Y N N N N N -11.128 12.927 16.008 5.240 0.258 0.270 C22 A1CTK 22 A1CTK C23 C23 C 0 1 Y N N N N N -11.434 13.455 14.762 4.845 0.713 -0.982 C23 A1CTK 23 A1CTK C24 C24 C 0 1 Y N N N N N -11.734 14.788 14.568 5.429 1.845 -1.519 C24 A1CTK 24 A1CTK C7 C25 C 0 1 N N N N N N -19.752 7.706 16.436 -3.918 0.851 0.315 C7 A1CTK 25 A1CTK C8 C26 C 0 1 N N S N N N -19.153 8.937 15.986 -5.056 0.567 -0.693 C8 A1CTK 26 A1CTK C9 C27 C 0 1 N N N N N N -19.329 11.021 14.667 -7.454 0.544 -1.023 C9 A1CTK 27 A1CTK N1 N1 N 0 1 Y N N N N N -14.075 7.029 16.996 -0.875 -1.941 1.342 N1 A1CTK 28 A1CTK N2 N2 N 0 1 N N N N N N -17.458 7.230 15.944 -3.481 -1.203 -0.903 N2 A1CTK 29 A1CTK N3 N3 N 0 1 N N N N N N -19.989 9.817 15.204 -6.361 0.916 -0.116 N3 A1CTK 30 A1CTK N4 N4 N 0 1 N N N N N N -23.234 13.945 13.306 -11.150 2.667 1.324 N4 A1CTK 31 A1CTK N5 N5 N 0 1 Y N N N N N -12.433 8.364 16.476 1.250 -2.309 1.006 N5 A1CTK 32 A1CTK N6 N6 N 0 1 N N N N N N -10.812 11.521 16.106 4.651 -0.889 0.817 N6 A1CTK 33 A1CTK O1 O1 O 0 1 N N N N N N -12.837 10.983 16.982 2.624 -0.223 0.207 O1 A1CTK 34 A1CTK CL1 CL1 CL 0 0 N N N N N N -11.399 12.412 13.396 3.621 -0.138 -1.870 CL1 A1CTK 35 A1CTK CL2 CL2 CL 0 0 N N N N N N -12.116 17.262 15.513 7.132 3.949 -1.488 CL2 A1CTK 36 A1CTK CL3 CL3 CL 0 0 N N N N N N -10.685 13.171 18.625 6.718 0.375 2.542 CL3 A1CTK 37 A1CTK H1 H1 H 0 1 N N N N N N -12.928 6.589 19.332 0.581 -2.010 3.971 H1 A1CTK 38 A1CTK H2 H2 H 0 1 N N N N N N -11.312 6.960 18.641 1.592 -0.763 3.202 H2 A1CTK 39 A1CTK H3 H3 H 0 1 N N N N N N -12.299 8.271 19.373 -0.146 -0.471 3.450 H3 A1CTK 40 A1CTK H4 H4 H 0 1 N N N N N N -17.046 6.078 14.252 -3.774 -3.249 -1.284 H4 A1CTK 41 A1CTK H5 H5 H 0 1 N N N N N N -16.242 5.542 15.766 -3.431 -2.839 0.414 H5 A1CTK 42 A1CTK H6 H6 H 0 1 N N N N N N -18.963 5.920 15.400 -1.956 0.045 -0.135 H6 A1CTK 43 A1CTK H7 H7 H 0 1 N N N N N N -18.575 5.978 17.153 -2.863 -0.876 1.095 H7 A1CTK 44 A1CTK H8 H8 H 0 1 N N N N N N -22.970 11.530 15.798 -7.779 2.051 1.877 H8 A1CTK 45 A1CTK H9 H9 H 0 1 N N N N N N -22.567 10.584 14.324 -7.782 3.699 1.202 H9 A1CTK 46 A1CTK H10 H10 H 0 1 N N N N N N -20.851 10.879 16.843 -6.367 2.939 -0.680 H10 A1CTK 47 A1CTK H11 H11 H 0 1 N N N N N N -21.759 9.417 16.328 -5.580 2.593 0.878 H11 A1CTK 48 A1CTK H12 H12 H 0 1 N N N N N N -17.111 9.258 15.271 -5.434 -1.505 -0.109 H12 A1CTK 49 A1CTK H13 H13 H 0 1 N N N N N N -18.131 8.271 14.170 -5.372 -1.240 -1.882 H13 A1CTK 50 A1CTK H14 H14 H 0 1 N N N N N N -15.853 7.485 12.737 -2.029 -3.729 -2.771 H14 A1CTK 51 A1CTK H15 H15 H 0 1 N N N N N N -13.999 8.999 12.179 0.357 -4.162 -3.175 H15 A1CTK 52 A1CTK H16 H16 H 0 1 N N N N N N -11.335 15.787 17.794 7.564 2.604 0.984 H16 A1CTK 53 A1CTK H17 H17 H 0 1 N N N N N N -20.594 11.386 12.922 -8.861 0.171 0.565 H17 A1CTK 54 A1CTK H18 H18 H 0 1 N N N N N N -19.699 12.832 13.501 -9.608 0.525 -1.012 H18 A1CTK 55 A1CTK H19 H19 H 0 1 N N N N N N -21.079 12.959 15.439 -8.885 2.879 -0.847 H19 A1CTK 56 A1CTK H20 H20 H 0 1 N N N N N N -12.309 9.563 13.860 2.034 -3.553 -1.485 H20 A1CTK 57 A1CTK H21 H21 H 0 1 N N N N N N -10.720 8.966 17.497 3.124 -3.202 0.708 H21 A1CTK 58 A1CTK H22 H22 H 0 1 N N N N N N -10.610 9.012 15.705 2.894 -2.441 2.301 H22 A1CTK 59 A1CTK H23 H23 H 0 1 N N N N N N -11.982 15.178 13.592 5.123 2.200 -2.492 H23 A1CTK 60 A1CTK H24 H24 H 0 1 N N N N N N -20.025 7.784 17.499 -4.312 0.881 1.331 H24 A1CTK 61 A1CTK H25 H25 H 0 1 N N N N N N -20.650 7.483 15.842 -3.422 1.791 0.074 H25 A1CTK 62 A1CTK H26 H26 H 0 1 N N N N N N -18.808 9.492 16.871 -4.888 1.107 -1.625 H26 A1CTK 63 A1CTK H27 H27 H 0 1 N N N N N N -18.488 10.700 14.035 -7.365 -0.510 -1.286 H27 A1CTK 64 A1CTK H28 H28 H 0 1 N N N N N N -18.947 11.610 15.513 -7.396 1.150 -1.928 H28 A1CTK 65 A1CTK H31 H31 H 0 1 N N N N N N -9.912 11.189 15.824 5.200 -1.548 1.270 H31 A1CTK 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CTK C17 C16 DOUB Y N 1 A1CTK C17 C18 SING Y N 2 A1CTK N4 C12 TRIP N N 3 A1CTK CL1 C23 SING N N 4 A1CTK C16 C4 SING Y N 5 A1CTK C12 C11 SING N N 6 A1CTK C10 C11 SING N N 7 A1CTK C10 C9 SING N N 8 A1CTK C18 C19 DOUB Y N 9 A1CTK C24 C23 DOUB Y N 10 A1CTK C24 C25 SING Y N 11 A1CTK C11 C13 SING N N 12 A1CTK C9 N3 SING N N 13 A1CTK C23 C22 SING Y N 14 A1CTK C4 C5 SING N N 15 A1CTK C4 C3 DOUB Y N 16 A1CTK C13 C14 SING N N 17 A1CTK C5 N2 SING N N 18 A1CTK N3 C14 SING N N 19 A1CTK N3 C8 SING N N 20 A1CTK C15 N2 SING N N 21 A1CTK C15 C8 SING N N 22 A1CTK C19 C3 SING Y N 23 A1CTK C19 N5 SING Y N 24 A1CTK CL2 C25 SING N N 25 A1CTK C25 C26 DOUB Y N 26 A1CTK C3 N1 SING Y N 27 A1CTK N2 C6 SING N N 28 A1CTK C8 C7 SING N N 29 A1CTK C22 N6 SING N N 30 A1CTK C22 C27 DOUB Y N 31 A1CTK N6 C21 SING N N 32 A1CTK C6 C7 SING N N 33 A1CTK N5 C20 SING N N 34 A1CTK N5 C2 SING Y N 35 A1CTK C20 C21 SING N N 36 A1CTK C21 O1 DOUB N N 37 A1CTK C26 C27 SING Y N 38 A1CTK N1 C2 DOUB Y N 39 A1CTK C27 CL3 SING N N 40 A1CTK C2 C1 SING N N 41 A1CTK C1 H1 SING N N 42 A1CTK C1 H2 SING N N 43 A1CTK C1 H3 SING N N 44 A1CTK C5 H4 SING N N 45 A1CTK C5 H5 SING N N 46 A1CTK C6 H6 SING N N 47 A1CTK C6 H7 SING N N 48 A1CTK C13 H8 SING N N 49 A1CTK C13 H9 SING N N 50 A1CTK C14 H10 SING N N 51 A1CTK C14 H11 SING N N 52 A1CTK C15 H12 SING N N 53 A1CTK C15 H13 SING N N 54 A1CTK C16 H14 SING N N 55 A1CTK C17 H15 SING N N 56 A1CTK C26 H16 SING N N 57 A1CTK C10 H17 SING N N 58 A1CTK C10 H18 SING N N 59 A1CTK C11 H19 SING N N 60 A1CTK C18 H20 SING N N 61 A1CTK C20 H21 SING N N 62 A1CTK C20 H22 SING N N 63 A1CTK C24 H23 SING N N 64 A1CTK C7 H24 SING N N 65 A1CTK C7 H25 SING N N 66 A1CTK C8 H26 SING N N 67 A1CTK C9 H27 SING N N 68 A1CTK C9 H28 SING N N 69 A1CTK N6 H31 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CTK SMILES ACDLabs 14.52 "Clc1cc(Cl)cc(Cl)c1NC(=O)Cn1c2cccc(CN3CC(CC3)N3CCC(CC3)C#N)c2nc1C" A1CTK InChI InChI 1.06 "InChI=1S/C27H29Cl3N6O/c1-17-32-26-19(14-34-8-7-21(15-34)35-9-5-18(13-31)6-10-35)3-2-4-24(26)36(17)16-25(37)33-27-22(29)11-20(28)12-23(27)30/h2-4,11-12,18,21H,5-10,14-16H2,1H3,(H,33,37)/t21-/m0/s1" A1CTK InChIKey InChI 1.06 ATPHIBZQRPBNHJ-NRFANRHFSA-N A1CTK SMILES_CANONICAL CACTVS 3.385 "Cc1nc2c(CN3CC[C@@H](C3)N4CCC(CC4)C#N)cccc2n1CC(=O)Nc5c(Cl)cc(Cl)cc5Cl" A1CTK SMILES CACTVS 3.385 "Cc1nc2c(CN3CC[CH](C3)N4CCC(CC4)C#N)cccc2n1CC(=O)Nc5c(Cl)cc(Cl)cc5Cl" A1CTK SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1nc2c(cccc2n1CC(=O)Nc3c(cc(cc3Cl)Cl)Cl)CN4CC[C@@H](C4)N5CCC(CC5)C#N" A1CTK SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1nc2c(cccc2n1CC(=O)Nc3c(cc(cc3Cl)Cl)Cl)CN4CCC(C4)N5CCC(CC5)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CTK "SYSTEMATIC NAME" ACDLabs 14.52 "2-(4-{[(3S)-3-(4-cyanopiperidin-1-yl)pyrrolidin-1-yl]methyl}-2-methyl-1H-1,3-benzimidazol-1-yl)-N-(2,4,6-trichlorophenyl)acetamide" A1CTK "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[4-[[(3~{S})-3-(4-cyanopiperidin-1-yl)pyrrolidin-1-yl]methyl]-2-methyl-benzimidazol-1-yl]-~{N}-[2,4,6-tris(chloranyl)phenyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CTK "Create component" 2025-09-15 RCSB A1CTK "Initial release" 2026-04-08 RCSB #