data_A1CTN # _chem_comp.id A1CTN _chem_comp.name "4-[2-(2-amino-4-methyl-1H-1,3-benzimidazol-1-yl)acetamido]-N-benzyl-3-chloro-2-methylbenzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 Cl N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-15 _chem_comp.pdbx_modified_date 2026-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.943 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CTN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Y8S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CTN C1 C1 C 0 1 N N N N N N -11.914 15.598 14.858 3.046 3.864 0.130 C1 A1CTN 1 A1CTN C2 C2 C 0 1 Y N N N N N -11.616 14.536 15.894 2.131 2.688 -0.093 C2 A1CTN 2 A1CTN C3 C3 C 0 1 Y N N N N N -11.333 14.892 17.214 2.644 1.389 -0.076 C3 A1CTN 3 A1CTN C4 C4 C 0 1 N N N N N N -11.500 16.278 17.722 4.084 1.165 0.160 C4 A1CTN 4 A1CTN O1 O1 O 0 1 N N N N N N -12.572 16.883 17.604 4.813 2.107 0.406 O1 A1CTN 5 A1CTN N1 N1 N 0 1 N N N N N N -10.487 16.769 18.390 4.590 -0.082 0.104 N1 A1CTN 6 A1CTN C5 C5 C 0 1 N N N N N N -10.580 18.020 19.124 6.019 -0.304 0.338 C5 A1CTN 7 A1CTN C6 C6 C 0 1 Y N N N N N -10.021 19.140 18.281 6.326 -1.775 0.218 C6 A1CTN 8 A1CTN C7 C7 C 0 1 Y N N N N N -8.700 19.515 18.400 6.680 -2.309 -1.006 C7 A1CTN 9 A1CTN C8 C8 C 0 1 Y N N N N N -8.190 20.553 17.623 6.961 -3.658 -1.116 C8 A1CTN 10 A1CTN C9 C9 C 0 1 Y N N N N N -8.992 21.210 16.713 6.887 -4.473 -0.002 C9 A1CTN 11 A1CTN C10 C10 C 0 1 Y N N N N N -10.300 20.817 16.553 6.533 -3.938 1.223 C10 A1CTN 12 A1CTN C11 C11 C 0 1 Y N N N N N -10.808 19.776 17.331 6.259 -2.588 1.334 C11 A1CTN 13 A1CTN C12 C12 C 0 1 Y N N N N N -11.013 13.917 18.165 1.792 0.301 -0.283 C12 A1CTN 14 A1CTN C13 C13 C 0 1 Y N N N N N -10.914 12.599 17.805 0.449 0.512 -0.503 C13 A1CTN 15 A1CTN C14 C14 C 0 1 Y N N N N N -11.156 12.241 16.503 -0.060 1.806 -0.519 C14 A1CTN 16 A1CTN N2 N2 N 0 1 N N N N N N -11.085 10.889 16.101 -1.421 2.017 -0.742 N2 A1CTN 17 A1CTN C15 C15 C 0 1 N N N N N N -11.960 9.953 16.473 -2.324 1.128 -0.283 C15 A1CTN 18 A1CTN O2 O2 O 0 1 N N N N N N -13.007 10.217 17.071 -1.951 0.101 0.243 O2 A1CTN 19 A1CTN C16 C16 C 0 1 N N N N N N -11.621 8.540 16.074 -3.798 1.410 -0.423 C16 A1CTN 20 A1CTN N3 N3 N 0 1 Y N N N N N -12.845 7.788 15.882 -4.564 0.301 0.149 N3 A1CTN 21 A1CTN C17 C17 C 0 1 Y N N N N N -13.342 6.967 16.830 -4.985 0.190 1.443 C17 A1CTN 22 A1CTN N4 N4 N 0 1 N N N N N N -12.787 6.783 18.039 -4.752 1.120 2.434 N4 A1CTN 23 A1CTN N5 N5 N 0 1 Y N N N N N -14.434 6.414 16.432 -5.644 -0.931 1.602 N5 A1CTN 24 A1CTN C18 C18 C 0 1 Y N N N N N -14.668 6.884 15.162 -5.686 -1.607 0.424 C18 A1CTN 25 A1CTN C19 C19 C 0 1 Y N N N N N -15.676 6.543 14.349 -6.247 -2.826 0.037 C19 A1CTN 26 A1CTN C20 C20 C 0 1 N N N N N N -16.757 5.620 14.847 -6.989 -3.670 1.041 C20 A1CTN 27 A1CTN C21 C21 C 0 1 Y N N N N N -15.658 7.158 13.117 -6.119 -3.255 -1.266 C21 A1CTN 28 A1CTN C22 C22 C 0 1 Y N N N N N -14.689 8.072 12.699 -5.438 -2.485 -2.196 C22 A1CTN 29 A1CTN C23 C23 C 0 1 Y N N N N N -13.632 8.413 13.531 -4.879 -1.278 -1.830 C23 A1CTN 30 A1CTN C24 C24 C 0 1 Y N N N N N -13.660 7.770 14.761 -5.002 -0.828 -0.524 C24 A1CTN 31 A1CTN C25 C25 C 0 1 Y N N N N N -11.503 13.211 15.571 0.785 2.893 -0.308 C25 A1CTN 32 A1CTN CL1 CL1 CL 0 0 N N N N N N -11.796 12.711 13.945 0.144 4.506 -0.321 CL1 A1CTN 33 A1CTN H1 H1 H 0 1 N N N N N N -13.000 15.765 14.805 3.543 4.120 -0.806 H1 A1CTN 34 A1CTN H2 H2 H 0 1 N N N N N N -11.412 16.536 15.139 2.464 4.718 0.477 H2 A1CTN 35 A1CTN H3 H3 H 0 1 N N N N N N -11.546 15.266 13.876 3.794 3.606 0.880 H3 A1CTN 36 A1CTN H4 H4 H 0 1 N N N N N N -9.622 16.268 18.395 4.009 -0.834 -0.092 H4 A1CTN 37 A1CTN H6 H5 H 0 1 N N N N N N -10.004 17.941 20.058 6.599 0.249 -0.401 H6 A1CTN 38 A1CTN H5 H6 H 0 1 N N N N N N -11.634 18.229 19.360 6.281 0.041 1.338 H5 A1CTN 39 A1CTN H7 H7 H 0 1 N N N N N N -8.057 19.001 19.099 6.738 -1.673 -1.877 H7 A1CTN 40 A1CTN H8 H8 H 0 1 N N N N N N -7.157 20.846 17.734 7.238 -4.076 -2.073 H8 A1CTN 41 A1CTN H9 H9 H 0 1 N N N N N N -8.595 22.028 16.130 7.107 -5.527 -0.088 H9 A1CTN 42 A1CTN H10 H10 H 0 1 N N N N N N -10.931 21.311 15.829 6.475 -4.575 2.094 H10 A1CTN 43 A1CTN H11 H11 H 0 1 N N N N N N -11.831 19.460 17.192 5.982 -2.170 2.291 H11 A1CTN 44 A1CTN H12 H12 H 0 1 N N N N N N -10.843 14.206 19.192 2.186 -0.704 -0.271 H12 A1CTN 45 A1CTN H13 H13 H 0 1 N N N N N N -10.649 11.851 18.537 -0.210 -0.328 -0.663 H13 A1CTN 46 A1CTN H14 H14 H 0 1 N N N N N N -10.333 10.617 15.501 -1.717 2.802 -1.228 H14 A1CTN 47 A1CTN H16 H15 H 0 1 N N N N N N -11.021 8.069 16.866 -4.043 2.332 0.105 H16 A1CTN 48 A1CTN H15 H16 H 0 1 N N N N N N -11.046 8.551 15.136 -4.048 1.519 -1.479 H15 A1CTN 49 A1CTN H18 H17 H 0 1 N N N N N N -13.352 6.155 18.574 -4.254 1.927 2.234 H18 A1CTN 50 A1CTN H17 H18 H 0 1 N N N N N N -11.871 6.397 17.930 -5.086 0.966 3.332 H17 A1CTN 51 A1CTN H19 H19 H 0 1 N N N N N N -16.491 4.580 14.607 -8.044 -3.394 1.039 H19 A1CTN 52 A1CTN H20 H20 H 0 1 N N N N N N -16.859 5.730 15.937 -6.889 -4.723 0.776 H20 A1CTN 53 A1CTN H21 H21 H 0 1 N N N N N N -17.710 5.876 14.361 -6.572 -3.504 2.034 H21 A1CTN 54 A1CTN H22 H22 H 0 1 N N N N N N -16.450 6.916 12.424 -6.552 -4.198 -1.564 H22 A1CTN 55 A1CTN H23 H23 H 0 1 N N N N N N -14.763 8.518 11.718 -5.344 -2.832 -3.215 H23 A1CTN 56 A1CTN H24 H24 H 0 1 N N N N N N -12.860 9.113 13.248 -4.349 -0.683 -2.559 H24 A1CTN 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CTN C22 C21 SING Y N 1 A1CTN C22 C23 DOUB Y N 2 A1CTN C21 C19 DOUB Y N 3 A1CTN C23 C24 SING Y N 4 A1CTN CL1 C25 SING N N 5 A1CTN C19 C20 SING N N 6 A1CTN C19 C18 SING Y N 7 A1CTN C24 C18 DOUB Y N 8 A1CTN C24 N3 SING Y N 9 A1CTN C1 C2 SING N N 10 A1CTN C18 N5 SING Y N 11 A1CTN C25 C2 DOUB Y N 12 A1CTN C25 C14 SING Y N 13 A1CTN N3 C16 SING N N 14 A1CTN N3 C17 SING Y N 15 A1CTN C2 C3 SING Y N 16 A1CTN C16 C15 SING N N 17 A1CTN N2 C15 SING N N 18 A1CTN N2 C14 SING N N 19 A1CTN N5 C17 DOUB Y N 20 A1CTN C15 O2 DOUB N N 21 A1CTN C14 C13 DOUB Y N 22 A1CTN C10 C9 DOUB Y N 23 A1CTN C10 C11 SING Y N 24 A1CTN C9 C8 SING Y N 25 A1CTN C17 N4 SING N N 26 A1CTN C3 C4 SING N N 27 A1CTN C3 C12 DOUB Y N 28 A1CTN C11 C6 DOUB Y N 29 A1CTN O1 C4 DOUB N N 30 A1CTN C8 C7 DOUB Y N 31 A1CTN C4 N1 SING N N 32 A1CTN C13 C12 SING Y N 33 A1CTN C6 C7 SING Y N 34 A1CTN C6 C5 SING N N 35 A1CTN N1 C5 SING N N 36 A1CTN C1 H1 SING N N 37 A1CTN C1 H2 SING N N 38 A1CTN C1 H3 SING N N 39 A1CTN N1 H4 SING N N 40 A1CTN C5 H6 SING N N 41 A1CTN C5 H5 SING N N 42 A1CTN C7 H7 SING N N 43 A1CTN C8 H8 SING N N 44 A1CTN C9 H9 SING N N 45 A1CTN C10 H10 SING N N 46 A1CTN C11 H11 SING N N 47 A1CTN C12 H12 SING N N 48 A1CTN C13 H13 SING N N 49 A1CTN N2 H14 SING N N 50 A1CTN C16 H16 SING N N 51 A1CTN C16 H15 SING N N 52 A1CTN N4 H18 SING N N 53 A1CTN N4 H17 SING N N 54 A1CTN C20 H19 SING N N 55 A1CTN C20 H20 SING N N 56 A1CTN C20 H21 SING N N 57 A1CTN C21 H22 SING N N 58 A1CTN C22 H23 SING N N 59 A1CTN C23 H24 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CTN SMILES ACDLabs 14.52 "O=C(NCc1ccccc1)c1ccc(NC(=O)Cn2c3cccc(C)c3nc2N)c(Cl)c1C" A1CTN InChI InChI 1.06 "InChI=1S/C25H24ClN5O2/c1-15-7-6-10-20-23(15)30-25(27)31(20)14-21(32)29-19-12-11-18(16(2)22(19)26)24(33)28-13-17-8-4-3-5-9-17/h3-12H,13-14H2,1-2H3,(H2,27,30)(H,28,33)(H,29,32)" A1CTN InChIKey InChI 1.06 JLEQCAJZZGMRCS-UHFFFAOYSA-N A1CTN SMILES_CANONICAL CACTVS 3.385 "Cc1cccc2n(CC(=O)Nc3ccc(c(C)c3Cl)C(=O)NCc4ccccc4)c(N)nc12" A1CTN SMILES CACTVS 3.385 "Cc1cccc2n(CC(=O)Nc3ccc(c(C)c3Cl)C(=O)NCc4ccccc4)c(N)nc12" A1CTN SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1cccc2c1nc(n2CC(=O)Nc3ccc(c(c3Cl)C)C(=O)NCc4ccccc4)N" A1CTN SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1cccc2c1nc(n2CC(=O)Nc3ccc(c(c3Cl)C)C(=O)NCc4ccccc4)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CTN "SYSTEMATIC NAME" ACDLabs 14.52 "4-[2-(2-amino-4-methyl-1H-1,3-benzimidazol-1-yl)acetamido]-N-benzyl-3-chloro-2-methylbenzamide" A1CTN "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "4-[2-(2-azanyl-4-methyl-benzimidazol-1-yl)ethanoylamino]-3-chloranyl-2-methyl-~{N}-(phenylmethyl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CTN "Create component" 2025-09-15 RCSB A1CTN "Initial release" 2026-04-08 RCSB #