data_A1CTO # _chem_comp.id A1CTO _chem_comp.name "2-(2-amino-4-methyl-1H-1,3-benzimidazol-1-yl)-N-(2,6-dichloro-4-{[(propan-2-yl)oxy]methyl}phenyl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 Cl2 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-15 _chem_comp.pdbx_modified_date 2026-04-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.320 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CTO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9Y8Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CTO C1 C1 C 0 1 N N N N N N -16.759 5.867 15.035 7.098 -0.496 2.190 C1 A1CTO 1 A1CTO C2 C2 C 0 1 Y N N N N N -15.675 6.819 14.622 6.038 -0.952 1.221 C2 A1CTO 2 A1CTO C3 C3 C 0 1 Y N N N N N -15.578 7.375 13.350 5.928 -2.285 0.894 C3 A1CTO 3 A1CTO C4 C4 C 0 1 Y N N N N N -14.576 8.261 12.975 4.955 -2.714 0.004 C4 A1CTO 4 A1CTO C5 C5 C 0 1 Y N N N N N -13.605 8.637 13.854 4.083 -1.810 -0.568 C5 A1CTO 5 A1CTO C6 C6 C 0 1 Y N N N N N -13.672 8.093 15.133 4.180 -0.463 -0.250 C6 A1CTO 6 A1CTO C7 C7 C 0 1 Y N N N N N -14.674 7.213 15.513 5.160 -0.025 0.655 C7 A1CTO 7 A1CTO N1 N1 N 0 1 Y N N N N N -14.450 6.810 16.831 5.016 1.321 0.779 N1 A1CTO 8 A1CTO N2 N2 N 0 1 N N N N N N -12.756 7.316 18.434 3.605 3.037 -0.091 N2 A1CTO 9 A1CTO N3 N3 N 0 1 Y N N N N N -12.848 8.222 16.239 3.480 0.668 -0.638 N3 A1CTO 10 A1CTO C8 C8 C 0 1 Y N N N N N -13.347 7.428 17.234 4.026 1.729 0.025 C8 A1CTO 11 A1CTO C9 C9 C 0 1 N N N N N N -11.650 9.066 16.291 2.354 0.714 -1.574 C9 A1CTO 12 A1CTO C10 C10 C 0 1 N N N N N N -12.057 10.537 16.362 1.063 0.540 -0.816 C10 A1CTO 13 A1CTO O1 O1 O 0 1 N N N N N N -13.156 10.885 16.798 1.082 0.392 0.388 O1 A1CTO 14 A1CTO N4 N4 N 0 1 N N N N N N -11.115 11.404 15.975 -0.112 0.549 -1.475 N4 A1CTO 15 A1CTO C11 C11 C 0 1 Y N N N N N -11.273 12.813 15.988 -1.303 0.283 -0.788 C11 A1CTO 16 A1CTO C12 C12 C 0 1 Y N N N N N -11.132 13.568 17.145 -2.031 1.326 -0.228 C12 A1CTO 17 A1CTO CL1 CL1 CL 0 0 N N N N N N -10.724 12.790 18.586 -1.467 2.960 -0.380 CL1 A1CTO 18 A1CTO C13 C13 C 0 1 Y N N N N N -11.295 14.941 17.156 -3.207 1.059 0.449 C13 A1CTO 19 A1CTO C14 C14 C 0 1 Y N N N N N -11.575 15.584 15.979 -3.657 -0.242 0.570 C14 A1CTO 20 A1CTO C15 C15 C 0 1 N N N N N N -11.793 17.080 15.940 -4.939 -0.528 1.310 C15 A1CTO 21 A1CTO O2 O2 O 0 1 N N N N N N -11.770 17.700 17.198 -6.036 -0.486 0.395 O2 A1CTO 22 A1CTO C16 C16 C 0 1 N N N N N N -10.496 18.140 17.590 -7.305 -0.746 0.998 C16 A1CTO 23 A1CTO C17 C17 C 0 1 N N N N N N -10.685 18.388 19.054 -7.922 0.571 1.475 C17 A1CTO 24 A1CTO C18 C18 C 0 1 N N N N N N -10.158 19.369 16.814 -8.232 -1.401 -0.027 C18 A1CTO 25 A1CTO C19 C19 C 0 1 Y N N N N N -11.707 14.865 14.834 -2.935 -1.282 0.014 C19 A1CTO 26 A1CTO C20 C20 C 0 1 Y N N N N N -11.571 13.492 14.831 -1.761 -1.023 -0.669 C20 A1CTO 27 A1CTO CL2 CL2 CL 0 0 N N N N N N -11.654 12.573 13.365 -0.855 -2.329 -1.367 CL2 A1CTO 28 A1CTO H2 H1 H 0 1 N N N N N N -16.438 4.835 14.831 6.701 -0.528 3.204 H2 A1CTO 29 A1CTO H3 H2 H 0 1 N N N N N N -16.959 5.983 16.110 7.964 -1.155 2.117 H3 A1CTO 30 A1CTO H1 H3 H 0 1 N N N N N N -17.675 6.085 14.466 7.397 0.524 1.948 H1 A1CTO 31 A1CTO H4 H4 H 0 1 N N N N N N -16.321 7.103 12.615 6.605 -3.003 1.334 H4 A1CTO 32 A1CTO H5 H5 H 0 1 N N N N N N -14.566 8.658 11.971 4.879 -3.762 -0.244 H5 A1CTO 33 A1CTO H6 H6 H 0 1 N N N N N N -12.821 9.324 13.572 3.328 -2.150 -1.261 H6 A1CTO 34 A1CTO H8 H7 H 0 1 N N N N N N -13.277 6.681 19.005 4.052 3.737 0.410 H8 A1CTO 35 A1CTO H7 H8 H 0 1 N N N N N N -11.825 6.971 18.316 2.861 3.257 -0.673 H7 A1CTO 36 A1CTO H9 H9 H 0 1 N N N N N N -11.059 8.807 17.182 2.347 1.676 -2.087 H9 A1CTO 37 A1CTO H10 H10 H 0 1 N N N N N N -11.045 8.898 15.388 2.456 -0.088 -2.306 H10 A1CTO 38 A1CTO H11 H11 H 0 1 N N N N N N -10.242 11.034 15.656 -0.133 0.740 -2.426 H11 A1CTO 39 A1CTO H12 H12 H 0 1 N N N N N N -11.203 15.497 18.077 -3.773 1.869 0.885 H12 A1CTO 40 A1CTO H13 H13 H 0 1 N N N N N N -11.001 17.527 15.321 -4.883 -1.517 1.765 H13 A1CTO 41 A1CTO H14 H14 H 0 1 N N N N N N -12.773 17.273 15.479 -5.085 0.221 2.087 H14 A1CTO 42 A1CTO H15 H15 H 0 1 N N N N N N -9.732 17.365 17.430 -7.174 -1.414 1.849 H15 A1CTO 43 A1CTO H18 H16 H 0 1 N N N N N N -10.930 17.442 19.558 -7.262 1.038 2.205 H18 A1CTO 44 A1CTO H16 H17 H 0 1 N N N N N N -9.758 18.800 19.479 -8.054 1.240 0.624 H16 A1CTO 45 A1CTO H17 H18 H 0 1 N N N N N N -11.506 19.105 19.201 -8.890 0.373 1.934 H17 A1CTO 46 A1CTO H19 H19 H 0 1 N N N N N N -9.161 19.727 17.110 -7.793 -2.339 -0.367 H19 A1CTO 47 A1CTO H20 H20 H 0 1 N N N N N N -10.160 19.136 15.739 -9.201 -1.599 0.432 H20 A1CTO 48 A1CTO H21 H21 H 0 1 N N N N N N -10.904 20.150 17.021 -8.364 -0.733 -0.878 H21 A1CTO 49 A1CTO H22 H22 H 0 1 N N N N N N -11.923 15.378 13.908 -3.290 -2.297 0.111 H22 A1CTO 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CTO C4 C3 SING Y N 1 A1CTO C4 C5 DOUB Y N 2 A1CTO C3 C2 DOUB Y N 3 A1CTO CL2 C20 SING N N 4 A1CTO C5 C6 SING Y N 5 A1CTO C2 C1 SING N N 6 A1CTO C2 C7 SING Y N 7 A1CTO C20 C19 DOUB Y N 8 A1CTO C20 C11 SING Y N 9 A1CTO C19 C14 SING Y N 10 A1CTO C6 C7 DOUB Y N 11 A1CTO C6 N3 SING Y N 12 A1CTO C7 N1 SING Y N 13 A1CTO C15 C14 SING N N 14 A1CTO C15 O2 SING N N 15 A1CTO N4 C11 SING N N 16 A1CTO N4 C10 SING N N 17 A1CTO C14 C13 DOUB Y N 18 A1CTO C11 C12 DOUB Y N 19 A1CTO N3 C9 SING N N 20 A1CTO N3 C8 SING Y N 21 A1CTO C9 C10 SING N N 22 A1CTO C10 O1 DOUB N N 23 A1CTO C18 C16 SING N N 24 A1CTO N1 C8 DOUB Y N 25 A1CTO C12 C13 SING Y N 26 A1CTO C12 CL1 SING N N 27 A1CTO O2 C16 SING N N 28 A1CTO C8 N2 SING N N 29 A1CTO C16 C17 SING N N 30 A1CTO C1 H2 SING N N 31 A1CTO C1 H3 SING N N 32 A1CTO C1 H1 SING N N 33 A1CTO C3 H4 SING N N 34 A1CTO C4 H5 SING N N 35 A1CTO C5 H6 SING N N 36 A1CTO N2 H8 SING N N 37 A1CTO N2 H7 SING N N 38 A1CTO C9 H9 SING N N 39 A1CTO C9 H10 SING N N 40 A1CTO N4 H11 SING N N 41 A1CTO C13 H12 SING N N 42 A1CTO C15 H13 SING N N 43 A1CTO C15 H14 SING N N 44 A1CTO C16 H15 SING N N 45 A1CTO C17 H18 SING N N 46 A1CTO C17 H16 SING N N 47 A1CTO C17 H17 SING N N 48 A1CTO C18 H19 SING N N 49 A1CTO C18 H20 SING N N 50 A1CTO C18 H21 SING N N 51 A1CTO C19 H22 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CTO SMILES ACDLabs 14.52 "CC(C)OCc1cc(Cl)c(NC(=O)Cn2c3cccc(C)c3nc2N)c(Cl)c1" A1CTO InChI InChI 1.06 "InChI=1S/C20H22Cl2N4O2/c1-11(2)28-10-13-7-14(21)19(15(22)8-13)24-17(27)9-26-16-6-4-5-12(3)18(16)25-20(26)23/h4-8,11H,9-10H2,1-3H3,(H2,23,25)(H,24,27)" A1CTO InChIKey InChI 1.06 OBFZFSOLWPTDGZ-UHFFFAOYSA-N A1CTO SMILES_CANONICAL CACTVS 3.385 "CC(C)OCc1cc(Cl)c(NC(=O)Cn2c(N)nc3c(C)cccc23)c(Cl)c1" A1CTO SMILES CACTVS 3.385 "CC(C)OCc1cc(Cl)c(NC(=O)Cn2c(N)nc3c(C)cccc23)c(Cl)c1" A1CTO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1cccc2c1nc(n2CC(=O)Nc3c(cc(cc3Cl)COC(C)C)Cl)N" A1CTO SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1cccc2c1nc(n2CC(=O)Nc3c(cc(cc3Cl)COC(C)C)Cl)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CTO "SYSTEMATIC NAME" ACDLabs 14.52 "2-(2-amino-4-methyl-1H-1,3-benzimidazol-1-yl)-N-(2,6-dichloro-4-{[(propan-2-yl)oxy]methyl}phenyl)acetamide" A1CTO "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-(2-azanyl-4-methyl-benzimidazol-1-yl)-~{N}-[2,6-bis(chloranyl)-4-(propan-2-yloxymethyl)phenyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CTO "Create component" 2025-09-15 RCSB A1CTO "Initial release" 2026-04-08 RCSB #