data_A1CX2 # _chem_comp.id A1CX2 _chem_comp.name "N-{4-[(4,4-dimethyl-2-oxo-1,3-oxazolidin-3-yl)amino]-9H-pyrimido[4,5-b]indol-8-yl}-2,2-difluoroacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H16 F2 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-09 _chem_comp.pdbx_modified_date 2026-01-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.344 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CX2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 13RT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CX2 N2 N1 N 0 1 N N N N N N -45.138 -31.033 2.946 -2.659 0.505 -0.199 N2 A1CX2 1 A1CX2 C3 C1 C 0 1 N N N N N N -44.521 -30.446 -0.005 -4.543 0.161 2.269 C3 A1CX2 2 A1CX2 C6 C2 C 0 1 Y N N N N N -45.176 -30.570 4.256 -1.948 -0.672 -0.049 C6 A1CX2 3 A1CX2 C9 C3 C 0 1 Y N N N N N -46.367 -30.681 5.011 -0.549 -0.677 -0.107 C9 A1CX2 4 A1CX2 C12 C4 C 0 1 Y N N N N N -49.720 -32.213 3.900 1.602 2.446 -0.672 C12 A1CX2 5 A1CX2 C14 C5 C 0 1 Y N N N N N -49.749 -31.374 6.198 2.890 0.431 -0.419 C14 A1CX2 6 A1CX2 C17 C6 C 0 1 Y N N N N N -48.404 -30.970 6.050 1.714 -0.306 -0.258 C17 A1CX2 7 A1CX2 C1 C7 C 0 1 N N N N N N -43.381 -28.840 1.603 -4.614 2.460 1.253 C1 A1CX2 8 A1CX2 C10 C8 C 0 1 Y N N N N N -47.696 -31.197 4.827 0.479 0.356 -0.307 C10 A1CX2 9 A1CX2 C11 C9 C 0 1 Y N N N N N -48.377 -31.821 3.763 0.433 1.734 -0.515 C11 A1CX2 10 A1CX2 C13 C10 C 0 1 Y N N N N N -50.404 -31.989 5.108 2.827 1.798 -0.624 C13 A1CX2 11 A1CX2 C15 C11 C 0 1 N N N N N N -50.579 -29.825 7.874 5.238 0.476 -0.027 C15 A1CX2 12 A1CX2 C16 C12 C 0 1 N N N N N N -51.291 -29.571 9.206 6.591 -0.184 -0.096 C16 A1CX2 13 A1CX2 C2 C13 C 0 1 N N N N N N -43.537 -30.308 1.166 -4.860 0.970 1.010 C2 A1CX2 14 A1CX2 C4 C14 C 0 1 N N N N N N -42.172 -30.932 0.823 -6.315 0.728 0.563 C4 A1CX2 15 A1CX2 C5 C15 C 0 1 N N N N N N -43.101 -32.206 2.520 -4.883 0.043 -1.082 C5 A1CX2 16 A1CX2 C7 C16 C 0 1 Y N N N N N -44.154 -29.562 6.058 -1.902 -2.951 0.301 C7 A1CX2 17 A1CX2 C8 C17 C 0 1 Y N N N N N -46.314 -30.172 6.324 0.130 -1.895 0.050 C8 A1CX2 18 A1CX2 F1 F1 F 0 1 N N N N N N -52.039 -28.471 9.104 7.560 0.686 0.415 F1 A1CX2 19 A1CX2 F2 F2 F 0 1 N N N N N N -52.065 -30.601 9.536 6.575 -1.361 0.659 F2 A1CX2 20 A1CX2 N1 N2 N 0 1 N N N N N N -43.954 -31.177 2.246 -4.058 0.493 -0.127 N1 A1CX2 21 A1CX2 N3 N3 N 0 1 Y N N N N N -44.064 -30.010 4.806 -2.578 -1.826 0.158 N3 A1CX2 22 A1CX2 N4 N4 N 0 1 Y N N N N N -45.212 -29.601 6.866 -0.588 -3.000 0.249 N4 A1CX2 23 A1CX2 N5 N5 N 0 1 N N N N N N -50.389 -31.087 7.434 4.133 -0.214 -0.373 N5 A1CX2 24 A1CX2 N6 N6 N 0 1 Y N N N N N -47.541 -30.351 6.954 1.478 -1.654 -0.043 N6 A1CX2 25 A1CX2 O1 O1 O 0 1 N N N N N N -42.068 -32.052 1.689 -6.184 0.144 -0.765 O1 A1CX2 26 A1CX2 O2 O2 O 0 1 N N N N N N -43.249 -33.100 3.350 -4.490 -0.411 -2.138 O2 A1CX2 27 A1CX2 O3 O3 O 0 1 N N N N N N -50.185 -28.854 7.233 5.143 1.628 0.341 O3 A1CX2 28 A1CX2 H9 H1 H 0 1 N N N N N N -45.702 -30.404 2.412 -2.188 1.340 -0.349 H9 A1CX2 29 A1CX2 H6 H2 H 0 1 N N N N N N -45.485 -29.992 0.270 -5.173 0.505 3.090 H6 A1CX2 30 A1CX2 H4 H3 H 0 1 N N N N N N -44.113 -29.934 -0.889 -4.737 -0.895 2.081 H4 A1CX2 31 A1CX2 H5 H4 H 0 1 N N N N N N -44.670 -31.511 -0.235 -3.495 0.297 2.534 H5 A1CX2 32 A1CX2 H12 H5 H 0 1 N N N N N N -50.229 -32.688 3.074 1.565 3.513 -0.833 H12 A1CX2 33 A1CX2 H1 H6 H 0 1 N N N N N N -42.671 -28.780 2.441 -3.566 2.618 1.508 H1 A1CX2 34 A1CX2 H3 H7 H 0 1 N N N N N N -43.003 -28.244 0.759 -4.856 3.021 0.351 H3 A1CX2 35 A1CX2 H2 H8 H 0 1 N N N N N N -44.358 -28.446 1.921 -5.243 2.803 2.075 H2 A1CX2 36 A1CX2 H11 H9 H 0 1 N N N N N N -47.861 -32.000 2.831 -0.519 2.243 -0.552 H11 A1CX2 37 A1CX2 H13 H10 H 0 1 N N N N N N -51.437 -32.289 5.203 3.738 2.364 -0.749 H13 A1CX2 38 A1CX2 H15 H11 H 0 1 N N N N N N -50.513 -29.426 9.970 6.827 -0.420 -1.134 H15 A1CX2 39 A1CX2 H8 H12 H 0 1 N N N N N N -42.143 -31.250 -0.230 -6.812 0.033 1.240 H8 A1CX2 40 A1CX2 H7 H13 H 0 1 N N N N N N -41.358 -30.217 1.013 -6.861 1.670 0.514 H7 A1CX2 41 A1CX2 H10 H14 H 0 1 N N N N N N -43.261 -29.113 6.467 -2.449 -3.868 0.464 H10 A1CX2 42 A1CX2 H14 H15 H 0 1 N N N N N N -50.710 -31.848 7.998 4.198 -1.157 -0.590 H14 A1CX2 43 A1CX2 H16 H16 H 0 1 N N N N N N -47.765 -30.083 7.891 2.168 -2.332 0.031 H16 A1CX2 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CX2 C3 C2 SING N N 1 A1CX2 C4 C2 SING N N 2 A1CX2 C4 O1 SING N N 3 A1CX2 C2 C1 SING N N 4 A1CX2 C2 N1 SING N N 5 A1CX2 O1 C5 SING N N 6 A1CX2 N1 C5 SING N N 7 A1CX2 N1 N2 SING N N 8 A1CX2 C5 O2 DOUB N N 9 A1CX2 N2 C6 SING N N 10 A1CX2 C11 C12 DOUB Y N 11 A1CX2 C11 C10 SING Y N 12 A1CX2 C12 C13 SING Y N 13 A1CX2 C6 N3 DOUB Y N 14 A1CX2 C6 C9 SING Y N 15 A1CX2 N3 C7 SING Y N 16 A1CX2 C10 C9 SING Y N 17 A1CX2 C10 C17 DOUB Y N 18 A1CX2 C9 C8 DOUB Y N 19 A1CX2 C13 C14 DOUB Y N 20 A1CX2 C17 C14 SING Y N 21 A1CX2 C17 N6 SING Y N 22 A1CX2 C7 N4 DOUB Y N 23 A1CX2 C14 N5 SING N N 24 A1CX2 C8 N4 SING Y N 25 A1CX2 C8 N6 SING Y N 26 A1CX2 O3 C15 DOUB N N 27 A1CX2 N5 C15 SING N N 28 A1CX2 C15 C16 SING N N 29 A1CX2 F1 C16 SING N N 30 A1CX2 C16 F2 SING N N 31 A1CX2 N2 H9 SING N N 32 A1CX2 C3 H6 SING N N 33 A1CX2 C3 H4 SING N N 34 A1CX2 C3 H5 SING N N 35 A1CX2 C12 H12 SING N N 36 A1CX2 C1 H1 SING N N 37 A1CX2 C1 H3 SING N N 38 A1CX2 C1 H2 SING N N 39 A1CX2 C11 H11 SING N N 40 A1CX2 C13 H13 SING N N 41 A1CX2 C16 H15 SING N N 42 A1CX2 C4 H8 SING N N 43 A1CX2 C4 H7 SING N N 44 A1CX2 C7 H10 SING N N 45 A1CX2 N5 H14 SING N N 46 A1CX2 N6 H16 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CX2 SMILES ACDLabs 14.52 "CC1(C)COC(=O)N1Nc1ncnc2[NH]c3c(cccc3NC(=O)C(F)F)c12" A1CX2 InChI InChI 1.06 "InChI=1S/C17H16F2N6O3/c1-17(2)6-28-16(27)25(17)24-14-10-8-4-3-5-9(22-15(26)12(18)19)11(8)23-13(10)20-7-21-14/h3-5,7,12H,6H2,1-2H3,(H,22,26)(H2,20,21,23,24)" A1CX2 InChIKey InChI 1.06 PTHRQERZTZIPHI-UHFFFAOYSA-N A1CX2 SMILES_CANONICAL CACTVS 3.385 "CC1(C)COC(=O)N1Nc2ncnc3[nH]c4c(NC(=O)C(F)F)cccc4c23" A1CX2 SMILES CACTVS 3.385 "CC1(C)COC(=O)N1Nc2ncnc3[nH]c4c(NC(=O)C(F)F)cccc4c23" A1CX2 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1(COC(=O)N1Nc2c3c4cccc(c4[nH]c3ncn2)NC(=O)C(F)F)C" A1CX2 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1(COC(=O)N1Nc2c3c4cccc(c4[nH]c3ncn2)NC(=O)C(F)F)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CX2 "SYSTEMATIC NAME" ACDLabs 14.52 "N-{4-[(4,4-dimethyl-2-oxo-1,3-oxazolidin-3-yl)amino]-9H-pyrimido[4,5-b]indol-8-yl}-2,2-difluoroacetamide" A1CX2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[4-[(4,4-dimethyl-2-oxidanylidene-1,3-oxazolidin-3-yl)amino]-9~{H}-pyrimido[4,5-b]indol-8-yl]-2,2-bis(fluoranyl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CX2 "Create component" 2025-10-09 RCSB A1CX2 "Initial release" 2026-01-28 RCSB #