data_A1CXZ # _chem_comp.id A1CXZ _chem_comp.name "(3P)-3-(4-{[(2R)-1-hydroxy-3-methylbutan-2-yl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)thiophene-2-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H17 N5 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-09 _chem_comp.pdbx_modified_date 2026-01-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 327.404 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1CXZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 13RQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1CXZ N2 N1 N 0 1 Y N N N N N -44.105 -29.605 5.557 -2.434 -1.769 0.130 N2 A1CXZ 1 A1CXZ C3 C1 C 0 1 N N N N N N -43.475 -28.505 1.511 -4.230 -0.663 -1.565 C3 A1CXZ 2 A1CXZ C6 C2 C 0 1 Y N N N N N -45.270 -29.707 4.860 -1.829 -0.587 0.202 C6 A1CXZ 3 A1CXZ C9 C3 C 0 1 Y N N N N N -46.492 -29.536 5.551 -0.436 -0.539 0.020 C9 A1CXZ 4 A1CXZ C12 C4 C 0 1 Y N N N N N -49.999 -29.266 6.636 3.061 0.623 -0.303 C12 A1CXZ 5 A1CXZ C14 C5 C 0 1 N N N N N N -50.815 -29.062 4.312 4.348 -1.139 0.915 C14 A1CXZ 6 A1CXZ C1 C6 C 0 1 N N N N N N -42.777 -30.742 0.617 -6.211 0.455 -0.531 C1 A1CXZ 7 A1CXZ C10 C7 C 0 1 Y N N N N N -47.885 -29.581 5.229 0.566 0.519 0.022 C10 A1CXZ 8 A1CXZ C11 C8 C 0 1 Y N N N N N -48.569 -29.310 6.388 1.765 -0.076 -0.218 C11 A1CXZ 9 A1CXZ C13 C9 C 0 1 Y N N N N N -50.991 -29.191 5.695 4.229 0.110 0.224 C13 A1CXZ 10 A1CXZ C15 C10 C 0 1 Y N N N N N -51.940 -29.365 7.952 4.460 2.341 -0.911 C15 A1CXZ 11 A1CXZ C16 C11 C 0 1 Y N N N N N -50.570 -29.381 7.940 3.219 1.853 -0.926 C16 A1CXZ 12 A1CXZ C2 C12 C 0 1 N N N N N N -43.864 -29.991 1.407 -4.695 0.529 -0.726 C2 A1CXZ 13 A1CXZ C4 C13 C 0 1 N N R N N N -44.145 -30.632 2.792 -4.002 0.494 0.637 C4 A1CXZ 14 A1CXZ C5 C14 C 0 1 N N N N N N -44.426 -32.144 2.719 -4.468 1.686 1.476 C5 A1CXZ 15 A1CXZ C7 C15 C 0 1 Y N N N N N -44.161 -29.344 6.861 -1.748 -2.872 -0.108 C7 A1CXZ 16 A1CXZ C8 C16 C 0 1 Y N N N N N -46.381 -29.261 6.934 0.253 -1.742 -0.231 C8 A1CXZ 17 A1CXZ N1 N2 N 0 1 N N N N N N -45.260 -29.984 3.487 -2.551 0.566 0.450 N1 A1CXZ 18 A1CXZ N3 N3 N 0 1 Y N N N N N -45.228 -29.154 7.631 -0.444 -2.875 -0.285 N3 A1CXZ 19 A1CXZ N4 N4 N 0 1 N N N N N N -50.655 -28.961 3.173 4.443 -2.129 1.463 N4 A1CXZ 20 A1CXZ N5 N5 N 0 1 Y N N N N N -47.662 -29.141 7.422 1.579 -1.434 -0.370 N5 A1CXZ 21 A1CXZ O1 O1 O 0 1 N N N N N N -44.893 -32.628 3.957 -4.239 2.897 0.751 O1 A1CXZ 22 A1CXZ S1 S1 S 0 1 Y N N N N N -52.593 -29.225 6.346 5.547 1.231 -0.089 S1 A1CXZ 23 A1CXZ H6 H1 H 0 1 N N N N N N -44.248 -27.962 2.075 -4.723 -0.638 -2.537 H6 A1CXZ 24 A1CXZ H7 H2 H 0 1 N N N N N N -42.510 -28.414 2.031 -3.150 -0.610 -1.704 H7 A1CXZ 25 A1CXZ H5 H3 H 0 1 N N N N N N -43.389 -28.077 0.501 -4.485 -1.590 -1.052 H5 A1CXZ 26 A1CXZ H3 H4 H 0 1 N N N N N N -43.048 -31.805 0.539 -6.466 -0.472 -0.017 H3 A1CXZ 27 A1CXZ H2 H5 H 0 1 N N N N N N -42.692 -30.310 -0.391 -6.542 1.304 0.067 H2 A1CXZ 28 A1CXZ H1 H6 H 0 1 N N N N N N -41.813 -30.647 1.139 -6.704 0.479 -1.503 H1 A1CXZ 29 A1CXZ H14 H7 H 0 1 N N N N N N -48.316 -29.788 4.261 0.391 1.572 0.183 H14 A1CXZ 30 A1CXZ H15 H8 H 0 1 N N N N N N -52.540 -29.431 8.848 4.757 3.283 -1.349 H15 A1CXZ 31 A1CXZ H16 H9 H 0 1 N N N N N N -49.975 -29.472 8.837 2.397 2.377 -1.389 H16 A1CXZ 32 A1CXZ H4 H10 H 0 1 N N N N N N -44.795 -30.049 0.824 -4.440 1.456 -1.240 H4 A1CXZ 33 A1CXZ H8 H11 H 0 1 N N N N N N -43.238 -30.498 3.400 -4.257 -0.433 1.151 H8 A1CXZ 34 A1CXZ H9 H12 H 0 1 N N N N N N -45.188 -32.332 1.948 -5.532 1.587 1.690 H9 A1CXZ 35 A1CXZ H10 H13 H 0 1 N N N N N N -43.498 -32.671 2.453 -3.909 1.712 2.412 H10 A1CXZ 36 A1CXZ H13 H14 H 0 1 N N N N N N -43.207 -29.277 7.363 -2.279 -3.811 -0.158 H13 A1CXZ 37 A1CXZ H12 H15 H 0 1 N N N N N N -45.389 -29.103 3.031 -2.097 1.421 0.500 H12 A1CXZ 38 A1CXZ H17 H16 H 0 1 N N N N N N -47.902 -28.960 8.376 2.284 -2.076 -0.549 H17 A1CXZ 39 A1CXZ H11 H17 H 0 1 N N N N N N -45.060 -33.561 3.890 -4.511 3.695 1.224 H11 A1CXZ 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CXZ C1 C2 SING N N 1 A1CXZ C2 C3 SING N N 2 A1CXZ C2 C4 SING N N 3 A1CXZ C5 C4 SING N N 4 A1CXZ C5 O1 SING N N 5 A1CXZ C4 N1 SING N N 6 A1CXZ N4 C14 TRIP N N 7 A1CXZ N1 C6 SING N N 8 A1CXZ C14 C13 SING N N 9 A1CXZ C6 C9 DOUB Y N 10 A1CXZ C6 N2 SING Y N 11 A1CXZ C10 C9 SING Y N 12 A1CXZ C10 C11 DOUB Y N 13 A1CXZ C9 C8 SING Y N 14 A1CXZ N2 C7 DOUB Y N 15 A1CXZ C13 S1 SING Y N 16 A1CXZ C13 C12 DOUB Y N 17 A1CXZ S1 C15 SING Y N 18 A1CXZ C11 C12 SING N N 19 A1CXZ C11 N5 SING Y N 20 A1CXZ C12 C16 SING Y N 21 A1CXZ C7 N3 SING Y N 22 A1CXZ C8 N5 SING Y N 23 A1CXZ C8 N3 DOUB Y N 24 A1CXZ C16 C15 DOUB Y N 25 A1CXZ C3 H6 SING N N 26 A1CXZ C3 H7 SING N N 27 A1CXZ C3 H5 SING N N 28 A1CXZ C1 H3 SING N N 29 A1CXZ C1 H2 SING N N 30 A1CXZ C1 H1 SING N N 31 A1CXZ C10 H14 SING N N 32 A1CXZ C15 H15 SING N N 33 A1CXZ C16 H16 SING N N 34 A1CXZ C2 H4 SING N N 35 A1CXZ C4 H8 SING N N 36 A1CXZ C5 H9 SING N N 37 A1CXZ C5 H10 SING N N 38 A1CXZ C7 H13 SING N N 39 A1CXZ N1 H12 SING N N 40 A1CXZ N5 H17 SING N N 41 A1CXZ O1 H11 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1CXZ SMILES ACDLabs 14.52 "CC(C)C(CO)Nc1ncnc2[NH]c(cc21)c1ccsc1C#N" A1CXZ InChI InChI 1.06 "InChI=1S/C16H17N5OS/c1-9(2)13(7-22)21-16-11-5-12(20-15(11)18-8-19-16)10-3-4-23-14(10)6-17/h3-5,8-9,13,22H,7H2,1-2H3,(H2,18,19,20,21)/t13-/m0/s1" A1CXZ InChIKey InChI 1.06 DRKVDXJPFFUETJ-ZDUSSCGKSA-N A1CXZ SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](CO)Nc1ncnc2[nH]c(cc12)c3ccsc3C#N" A1CXZ SMILES CACTVS 3.385 "CC(C)[CH](CO)Nc1ncnc2[nH]c(cc12)c3ccsc3C#N" A1CXZ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)[C@H](CO)Nc1c2cc([nH]c2ncn1)c3ccsc3C#N" A1CXZ SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)C(CO)Nc1c2cc([nH]c2ncn1)c3ccsc3C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1CXZ "SYSTEMATIC NAME" ACDLabs 14.52 "(3P)-3-(4-{[(2R)-1-hydroxy-3-methylbutan-2-yl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)thiophene-2-carbonitrile" A1CXZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-[4-[[(2~{R})-3-methyl-1-oxidanyl-butan-2-yl]amino]-7~{H}-pyrrolo[2,3-d]pyrimidin-6-yl]thiophene-2-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1CXZ "Create component" 2025-10-09 RCSB A1CXZ "Initial release" 2026-01-28 RCSB #